SARS-CoV-2 natural infection in animals: a systematic review of studies and case reports and series

COVID-19 pandemic is essentially a zoonotic disease. In this context, early in 2020, transmission from humans to certain animals began reporting; the number of studies has grown since. To estimate the pooled prevalence of SARS-CoV-2 natural infection in animals and to determine differences in prevalence between countries, years, animal types and diagnostic methods (RT-PCR or serological tests). A systematic literature review with meta-analysis using eight databases. Observational studies were included but analyzed separately. We performed a random-effects model meta-analysis to calculate the pooled prevalence and 95% confidence interval (95% CI) for prevalence studies and case series. After the screening, 65 reports were selected for full-text assessment and included for qualitative and quantitative analyses. A total of 24 reports assessed SARS-CoV-2 infection by RT-PCR, combining a total of 321,785 animals, yielding a pooled prevalence of 12.3% (95% CI 11.6%–13.0%). Also, a total of 17 studies additionally assessed serological response against SARS-CoV-2, including nine by ELISA, four by PRTN, one by MIA, one by immunochromatography (rest, two studies, the method was not specified), combining a total of 5319 animals, yielding a pooled prevalence of 29.4% (95% CI 22.9%–35.9%). A considerable proportion of animals resulted infected by SARS-CoV-2, ranking minks among the highest value, followed by dogs and cats. Further studies in other animals are required to define the extent and importance of natural infection due to SARS-CoV-2. These findings have multiple implications for public human and animal health. One Health approach in this context is critical for prevention and control.     

Molecular identification of a 16SrIII-B phytoplasma associated with cassava witches’ broom disease

Since its arrival in the British Isles in 1845 Phytophthora infestans has remained the most destructive pathogen of potato. In the ensuing period, the British and Irish P. infestans populations have undergone major displacements following the immigration of novel strains. Here we report the re-emergence of the Ib mitochondrial DNA haplotype in the British and Irish P. infestans populations associated with the 6_A1 genotype. Historically associated with the previously panglobally distributed clonal lineage US-1, the Ib haplotype has not been detected (with the exception of a single isolate in the mid 1990s) in the British or Irish P. infestans populations since the early 1980s. The 6_A1 isolates analysed possessed mtDNA Ib, but were otherwise quite unlike US-1, having the Pep allozyme genotype 96/96 and novel RG57 and SSR fingerprints. These genetic characteristics strongly suggest that the appearance of the 6_A1 genotype in these populations has resulted from migration (possibly after a recombination event elsewhere). This study highlights the advantages of utilising a range of different markers in pathogen monitoring.     

A phytoplasma representative of a new subgroup, 16SrXIII-E, associated with Papaya apical curl necrosis

Papaya apical curl necrosis (PACN) has frequently been observed in several Brazilian states. Affected plants exhibit foliar chlorosis, curvature of the apex, shortening of the internodes leading to bunching of the crown leaves, necrosis of the young apical parts, leaf drop, and dieback. Naturally infected plants were sampled and subjected to PCR assays, which confirmed that a phytoplasma was associated with the disease. Sequencing of the 16S rRNA gene, conventional and computer-simulated RFLP analyses, and phylogenetic analysis allowed the determination of the PACN phytoplasma as a representative of a new subgroup, designated 16SrXIII-E. The phytoplasmas of various 16Sr groups, including 16SrI, 16SrII, 16SrX, 16SrXII, and 16SrXVII, are known to be involved in anomalies in papaya plants in several countries. However, the present study reports, for the first time, the occurrence of a 16SrXIII phytoplasma in association with a papaya disease.     

Innovative light management to improve production sustainability,overall quality,and the phenolics composition of nectarine (Prunus persica cv. Stark Red Gold)

Summary

This research was conducted under the framework of the ISAFRUIT Project and aimed to investigate the effects of different light micro-environments on the final overall quality of nectarine fruit production. Experiments were conducted in a commercial orchard of the nectarine (Prunus persica) ‘Stark Red Gold’ during 2006 and 2007. Reflective mulches were laid down in the inter-row spaces in mid-May. Those environmental conditions affected by mulching such as temperature and reflected light were monitored until fruit harvest. Fruit production per tree was enhanced by mulch-treatment in both years, but the differences were statistically significant only in 2006, when the average fruit weight was also enhanced. Nectarines became more ripe in the 2006 season, whereas no differences in the main fruit quality indices were detected in 2007.The concentrations of phenolic compounds in ripe nectarines were positively enhanced in both years. The increase in concentration of overall phenolic compounds (in mg 100 g^?1 fresh weight) was calculated to be approx. 60% in 2006 and 2007, indicating an interesting improvement of the nutraceutical and anti-oxidant potential of nectarines. Experiments were also conducted using UV plus white light irradiation under controlled conditions. The accumulation of phenolic compounds, specifically anthocyanin concentrations, in nectarines previously screened using paper bags were determined at different times after irradiation. The results clearly indicated an inducing effect of UV plus white light irradiation on the synthesis and accumulation of anthocyanins in fruit skin. The consequences for the colour and health potential of nectarines are discussed.     

Identification and characterization of complex bioactive oligosaccharides in white and red wine by a combination of mass spectrometry and gas chromatography

Over forty-five complex free oligosaccharides (of which several are novel) have been isolated and chemically characterized by gas chromatography and high resolution and high mass accuracy matrix-assisted laser desorption/ionization mass spectrometry (MALDI-FTICR MS) in red and white wines, Grignolino and Chardonnay, respectively. Oligosaccharides with a degree of polymerization between 3 and 14 were separated from simple monosaccharides and disaccharides by solid-phase extraction. The concentrations of free oligosaccharides were over 100 mg/L in both red and white wines. The free oligosaccharides-characterized for the first time in the present study-include hexose-oligosaccharides, xyloglucans, and arabinogalactans and may be the natural byproduct of the degradation of cell wall polysaccharides. The coupled gas chromatography and accurate mass spectrometry approach revealed an effective method to characterize and quantify complex functional oligosaccharides in both red and white wine.     

Removal of Arsenic from Aqueous Solutions by Sorption onto Sewage Sludge-Based Sorbent

This study aimed at evaluating and comparing the removal of arsenic from solutions by a low-cost waste-based sorbent, produced by pyrolysing sewage sludge under appropriate conditions, and by a commercially activated carbon. Batch sorption experiments were performed under isothermal conditions (20°C), in order to evaluate the effect of pH on the arsenic sorption kinetics and on the equilibrium sorption capacity of the materials under study. Kinetic data revealed that the arsenic sorption was faster onto the activated carbon than onto the pyrolysed sludge. The sorption process was well described by both the pseudo-first and pseudo-second-order kinetics equations for both materials. Changes in the initial solution pH have distinct effects on the removal of arsenic onto pyrolysed sludge and activated carbon. While for pyrolysed sludge, pH affects essentially the equilibrium time, for activated carbon it affects the sorption capacity. Equilibrium results were well described by both Freundlich and Langmuir isotherm models, although fittings corresponding to the Langmuir isotherm were slightly better. The Langmuir maximum sorption capacity determined for the pyrolysed sludge was 71???g?g^?1, while for activated carbon was 229???g?g^?1. Despite the relative lower capacity of the pyrolysed sludge, the considerable lower cost and the valorisation of the sludge may justify further research on its use for water decontamination.     

Genome-wide analysis of plastome sequence variation and development of plastidial CAPS markers in common potato and related <Emphasis Type="Italic">Solanum</Emphasis> species

The plastome sequence of the European cultivated potato, Solanum tuberosum subsp. tuberosum (tbr, GenBank accession no. DQ386163), was compared with that of S. bulbocastanum, a wild potato relative (blb, GenBank accession no. DQ347958), in order to characterize the degree and type of variability in different genomic regions, and develop molecular markers relevant to genetics, breeding and biotechnology of potato. One hundred forty-two and 251 PICs (Potentially Informative Characters) were found in coding and non-coding sequences (NCSs), respectively. Further, while variation in coding regions was almost exclusively due to nucleotide substitutions, 25% of PICs in NCSs of tbr and blb were due to indels, most of them mononucleotide or longer tandem repeats (micro and minisatellites). Four intergenic regions were selected for further analyses in other 16 tuber-bearing Solanum species. The rps16-trnQ ^UUG gene spacer was found to be the most variable, forty-six PICs in this region distinguishing 18 haplotypes. Analysis of haplotype relationships, based on variability in the four intergenic regions, confirmed that the most primitive species from Central America were the most distant to S. tuberosum. Finally, polymorphic sites in the same regions were used to develop a set of CAPS (Cleaved Amplified Polymorphic Sequences) markers for species/cytoplasm identification in Solanum spp.     

The effects of arsenic on the growth and nutritional status of Anadenanthera peregrina,a Brazilian savanna tree

Anadenanthera peregrina is a Brazilian savanna tree species that occurs naturally in arsenic (As)‐contaminated areas, and its As resistance has been associated with arbuscular mycorrhizal–fungi (AMF) symbiosis. A plant's ability to survive in stressful environments is correlated with its nutrition status, which can be affected by As uptake. The present study evaluated the influence of As on the concentrations and distribution of nutrients in the roots and shoots of A. peregrina grown in the absence of AMF. These plants were grown in substrates spiked with 0, 10, 50, and 100 mg As kg^–1 for 25 d under greenhouse conditions, and the concentrations of essential macro‐ (P, K, Ca, Mg, N, and S) and micro‐ (Fe, Mn, Cu, Zn, B, and Mo) nutrients in the roots and shoots were then determined. Enhanced As levels increased the concentrations of P, S, and N and decreased Ca, Mg, and Fe. Although the deleterious effects of As on the plants were striking, the internal As levels were high, which indicated some tissue tolerance of A. peregrina.     

First report of the use of meglumine antimoniate for treatment of canine leishmaniasis in a pregnant dog

Canine leishmaniasis during pregnancy is rarely reported, even in countries where the infection in dogs is endemic. The authors report a case of a 4 yr old bitch with leishmaniasis treated with meglumine antimoniate during pregnancy. The pregnancy and delivery were normal and the bitch presented improvement of the infection during treatment. Three puppies died within 2 days of birth and tested negative via real-time PCR for L. infantum. The two surviving puppies were followed clinically, serologically, and by real-time PCR until 1 yr of age with no evidence of congenital leishmaniasis. L. infantum DNA was detected with real-time PCR analysis of uterine tissue from the bitch at the time of ovariohysterectomy. PCR analysis was performed after an ovariohysterectomy of the bitch that was performed two months after parturition. Meglumine antimoniate use in the pregnant bitch may have prevented vertical transmission of leishmaniasis.     

Multiple progressive piloleiomyomas in a ferret (Mustela putorius furo): a case report

A 2.5‐year‐old ovariectomized female ferret developed multiple progressive linear and raised nodules on the skin. The first lesions occurred on the tail, which was then amputated. Over the following 3 years, additional lesions appeared in the vicinity of the scar and then further rostrally on the flanks and thorax. Histological and immunohistochemical investigation led to a diagnosis of multiple piloleiomyomas. The unique characteristics of this ferret disease are described and compared with those of multiple piloleiomyomas in humans and with those of other cutaneous smooth muscle cell tumours reported in the veterinary literature.