Stability in reproductive timing and habitat usage of Chinook salmon across six years of varying environmental conditions and abundance

The spatial and temporal distribution of spawning activity by autumn‐run Chinook salmon Oncorhynchus tshawytscha (Walbaum) was examined across multiple years. The study period included two years of extreme drought conditions when water temperatures in the spawning reach of the Stanislaus River were considered sub‐optimal for spawning and egg incubation. Despite varying levels of superimposition, redd counts and densities remained stable and positively associated with river location, indicating that superimposition may be driven by habitat preference rather than the absence of suitable spawning locations. Spawning occurred slightly later during drought years (6–10 days later compared with wetter years). This delay was attributable to deferred migration instead of deferred spawning, and the majority of redds were constructed at water temperatures exceeding the optimal temperature range. As a consequence, estimates of juvenile production during 2014 and 2015 were among the lowest on record. These findings may be related in part to the high hatchery contribution to the population, above‐average temperatures during spawning and incubation, and superimposition rates. Management recommendations include adequate cold‐water storage in the upstream reservoir, refined spawning habitat restoration techniques in the light of superimposition rates and, on a broader system scale, actions that reduce the amount of stray hatchery Chinook salmon.     

Humic products in agriculture: potential benefits and research challenges—a review

Journal of Soils and Sediments - Humic products have been used in cropland agriculture for several decades, but lack of widespread credibility has restricted their use to small proportions of...     

Intake, live animal scores/measurements and carcass composition and value of late-maturing beef and dairy breeds

The objectives of this study were to compare the progeny of 1) late-maturing beef with dairy breeds and 2) Charolais (CH), Limousin (LM), Simmental (SM) and Belgian Blue (BB) sires bred to beef suckler dams, for feed intake, blood hormones and metabolites, live animal measurements, carcass traits and carcass value in bull and steer production systems. The bull system included 50 late-maturing beef breeds and 22 Holsteins (HO) slaughtered at approximately 15 months of age, whereas the steer system consisted of 56 late-maturing beef breeds and 23 British Friesians (FR) slaughtered at approximately 24 months of age. Beef breeds were suckled until approximately 8 months of age, while dairy breeds were artificially reared until weaning at approximately 3 months of age. All animals were finished on an ad libitum concentrate diet. Mean live weight, live weight gain, carcass gain and feed efficiency were greater (P < 0.05) in beef than dairy breeds in both systems during the finishing period when offered concentrates. Although there was no difference in feed intake between beef and dairy breeds, intake expressed relative to live weight was lower (P < 0.001) in beef breeds in both systems. At 10 months of age and pre-slaughter, beef breeds had higher (P < 0.001) muscularity scores and greater scanned muscle depth (P < 0.001) than their dairy contemporaries. Carcass weight, kill-out proportion, carcass conformation score, meat proportion and value were greater (P < 0.001) and carcass fat and bone proportions were lower (P < 0.05) in beef than dairy breeds in both systems. Insulin concentrations were lower (P < 0.001) in beef than dairy breeds, whereas there was no difference in blood metabolites or IGF-1 concentrations. Feed intake expressed relative to live weight or feed efficiency did not differ between CH, LM, SM or BB sired progeny. Muscularity scores were greater (P < 0.05) in BB than SM, whereas skeletal scores were lower (P < 0.05) in LM than SM. Limousin had lower (P < 0.05) carcass gain per day of age than CH and SM, whereas SM had a lower (P < 0.05) carcass conformation score than BB and CH and a higher (P < 0.05) carcass fat score than CH. Simmental had a lower (P < 0.05) carcass meat proportion and a higher (P < 0.05) carcass fat proportion than CH, LM and BB, which were similar (P > 0.05). The improvement obtained for beef over dairy breeds in live weight gain was 12%, while the improvements in carcass gain and meat produced was 24% and 33%, respectively. This demonstrates that the importance of carcass data contributing to breed comparison studies cannot be over-emphasised.     

Detection of transgenic and endogenous plant DNA in digesta and tissues of sheep and pigs fed Roundup Ready canola meal

The persistence of plant-derived recombinant DNA in sheep and pigs fed genetically modified (Roundup Ready) canola was assessed by PCR and Southern hybridization analysis of DNA extracted from digesta, gastrointestinal (GI) tract tissues, and visceral organs. Sheep (n = 11) and pigs (n = 36) were fed to slaughter on diets containing 6.5 or 15% Roundup Ready canola. Native plant DNA (high- and low-copy-number gene fragments) and the cp4 epsps transgene that encodes 5-enolpyruvyl shikimate-3-phosphate synthase were tracked in ruminal, abomasal, and large intestinal digesta and in tissue from the esophagus, rumen, abomasum, small and large intestine, liver, and kidney of sheep and in cecal content and tissue from the duodenum, cecum, liver, spleen, and kidney of pigs. High-copy chloroplast-specific DNA (a 520-bp fragment) was detected in all digesta samples, the majority (89-100%) of intestinal tissues, and at least one of each visceral organ sample (frequencies of 3-27%) from sheep and swine. Low-copy rubisco fragments (186- and 540-bp sequences from the small subunit) were present at slightly lower, variable frequencies in digesta (18-82%) and intestinal tissues (9-27% of ovine and 17-25% of porcine samples) and infrequently in visceral organs (1 of 88 ovine samples; 3 of 216 porcine samples). Each of the five cp4 epsps transgene fragments (179-527 bp) surveyed was present in at least 27% of ovine large intestinal content samples (maximum = 64%) and at least 33% of porcine cecal content samples (maximum = 75%). In sheep, transgene fragments were more common in intestinal digesta than in ruminal or abomasal content. Transgene fragments were detected in 0 (esophagus) to 3 (large intestine) GI tract tissues from the 11 sheep and in 0-10 of the duodenal and cecal tissues collected from 36 pigs. The feed-ingested recombinant DNA was not detected in visceral tissues (liver, kidney) of lambs or in the spleen from pigs. Of note, however, one liver and one kidney sample from the pigs (different animals) were positive for a 278-bp fragment of the transgenic cp4 epsps (denoted F3). Examination of genomic libraries from these tissues yielded no conclusive information regarding integration of the fragment into porcine DNA. This study confirms that feed-ingested DNA fragments (endogenous and transgenic) do survive to the terminal GI tract and that uptake into gut epithelial tissues does occur. A very low frequency of transmittance to visceral tissue was confirmed in pigs, but not in sheep. It is recognized that the low copy number of transgenes in GM feeds is a challenge to their detection in tissues, but there was no evidence to suggest that recombinant DNA would be processed in the gut in any manner different from endogenous feed-ingested genetic material.     

Use of two in vitro methods for the detection of anthelmintic resistant nematode parasites on Slovak sheep farms

A survey of the prevalence of anthelmintic resistant nematode populations was conducted on 32 sheep farms in the Slovak Republic. In vitro egg hatch test and larval development tests were used for the detection of resistance to benzimidazole anthelmintics and they were compared with in vivo faecal egg count reduction tests. There was agreement in the declaration of resistance between the faecal egg count reduction test and both in vitro tests. The presence of resistant populations was determined on two farms using egg hatch test. In both farms, the LD(50) values were higher than 0.1 microg TBZ/ml, indicating resistance. By using LD(99) values it might be possible to reveal relatively small proportion of resistant larvae in the population. The prevalence of benzimidazole resistance has not change on Slovak sheep farms during last decade.     

Where do you think you’re going? Accounting for ontogenetic and climate‐induced movement in spatially stratified integrated population assessment models

Understanding spatial population structure and biocomplexity is critical for determining a species’ resilience to environmental and anthropogenic perturbations. However, integrated population models (IPMs) used to develop management advice for harvested populations have been slow to incorporate spatial dynamics. Therefore, limited research has been devoted to understanding the reliability of movement parameter estimation in spatial population models, especially for spatially dynamic marine fish populations. We implemented a spatial simulation–estimation framework that emulated a generic marine fish metapopulation to explore the impact of ontogenetic movement and climate‐induced distributional shifts between two populations. The robustness of spatially stratified IPMs was explored across a range of movement parametrizations, including ignoring connectivity or estimating movement with various levels of complexity. Ignoring connectivity was detrimental to accurate estimation of population‐specific biomass, while implementing spatial IPMs with intermediate levels of complexity (e.g. estimating movement in two‐year and two‐age blocks) performed best when no a priori information about underlying movement was available. One‐way distributional shifts mimicking climate‐induced poleward migrations presented the greatest estimation difficulties, but the incorporation of auxiliary information on connectivity (e.g. tag‐recapture data) reduced bias. The continued development of spatially stratified modelling approaches should allow harvested resources to be better utilized without increased risk. Additionally, expanded collection and incorporation of unique spatially explicit data will enhance the robustness of IPMs in the future.     

Ecosystem services: Foundations,opportunities, and challenges for the forest products sector

The ecosystem service concept has been proposed as a meaningful framework for natural resource management. In theory it holds concomitant benefit and consequence for the forest product sector. However, numerous barriers impede practitioners from developing concrete and enduring responses to emerging ecosystem service markets, policies, and initiatives. Principle among these barriers is that the ecosystem service concept has a complex history, numerous definitions in use, and an astounding diversity in rationale and application. This article provides a conceptual review of ecosystem services and its economic foundations, distinguishes among several current definitions of the term and their relatedness to strategies in practical application, discusses diverse approaches to valuation, and explores potential for future relevance in forest product and other sectors.     

Algal Lectins as Potential HIV Microbicide Candidates

The development and use of topical microbicides potentially offers an additional strategy to reduce the spread of the Human Immunodeficiency Virus (HIV). Carbohydrate-binding agents (CBAs) that show specificity for high mannose carbohydrates on the surface of the heavily glycosylated envelope of HIV are endowed with potent anti-HIV activity. In fact, a number of algal lectins such as cyanovirin-N, microvirin, microcystis viridis lectin, scytovirin, Oscillatoria agardhii agglutinin and griffithsin are considered as potential microbicide candidates to prevent the sexual transmission of HIV through topical applications. They not only inhibit infection of cells by cell-free virus but they can also efficiently prevent virus transmission from virus-infected cells to uninfected CD4(+) target T-lymphocytes and DC-SIGN-directed capture of HIV-1 and transmission to CD4(+) T lymphocytes. This review focuses on the structural properties and carbohydrate specificity of these algal lectins, their antiviral activity against HIV and several other enveloped viruses, their safety profile and viral resistance patterns.     

Seafood mislabelling: comparisons of two western European case studies assist in defining influencing factors,mechanisms and motives

The global seafood industry, influenced by consumer demand, is closely linked to the global fishing industry, which determines the variety of fish available for consumption. The recently revealed issue of seafood mislabelling threatens to weaken this link by removing consumer power to influence patterns of fisheries exploitation through informed choice. Recognizing this, there is an urgent need to go beyond the mere documentation of the phenomenon and learn more about the origins of this problem and the nature of factors influencing its occurrence to develop solutions. In an attempt to understand seafood mislabelling more thoroughly in Europe, 226 cod products were purchased from Ireland and the UK, genetically identified using a DNA barcoding technique (COI barcoding gene), and species identification results were compared against product labels. Cod mislabelling proved more severe in Ireland than in the UK (28.4% vs. 7.4%). Moreover, whereas data show that in Ireland, cheaper species are sold as cod, in the UK, threatened Atlantic cod (Gadus morhua) may be sold as ‘sustainably sourced’ Pacific cod. Considering these countries operate under the same EU policies for seafood traceability and labelling, it is likely that this situation has been influenced by heightened consumer awareness in the UK, which has created an environment where mislabelling is discouraged. In addition to identifying samples, traceability information from packaged cod was used to trace products back to supplying companies. Although inconclusive in determining blame, this exercise has demonstrated that using traceability information can add explanatory power when attempting to determine responsibility for the occurrence of mislabelling.