The decline of endangered stone crayfish (Austropotamobius torrentium) in southern Germany is related to the spread of invasive alien species and land‐use change

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Impact of ecologically different earthworm species on soil water characteristics

A laboratory experiment was performed to assess the impact of ecologically different earthworm species on soil water characteristics, such as soil tension, water content, and water infiltration rate. Three earthworm species (Lumbricus rubellus, Aporrectodea caliginosa, Lumbricus terrestris) were exposed in soil columns (diameter 30 cm, height 50 cm) for 100 days with a total fresh earthworm biomass of 22.7 ± 0.4 g per column, each in duplicate. Each column was equipped with tensiometers at 10 and 40 cm and FD-probes at 10 cm depth, to continuously measure the temporal development of soil tension and soil moisture. Additionally, 30 g of sieved and rewetted horse manure was placed on the soil surface as a food source. Precipitation events (10 mm) were simulated at day 28 and day 64. At the end of the experiment the water infiltration rate and the runoff at 55 cm depth were determined.The results showed considerable evidence, that ecologically different earthworms modify soil water characteristics in different ways. The anecic L. terrestris and the endogeic A. caliginosa showed the tendency to enhance the drying of the topsoil and subsoil. Their intensive and deep burrowing activity might enhance the exchange of water vapor due to a better aeration in soil. In contrast, the epigeic L. rubellus tended to enhance the storage of soil moisture in the topsoil, which might be linked to lower rates of litter loss from soil surface and thus a thicker litter layer remaining. A. caliginosa led to considerable higher water infiltration rates and faster water discharges in the subsoil, relative to the other species, probably due to a high soil dwelling activity.     

Persistence of a biocontrol Pseudomonas inoculant as high populations of culturable and non-culturable cells in 200-cm-deep soil profiles

Little is known about the ecology of soil inoculants used for pathogen biocontrol, biofertilization and bioremediation under field conditions. We investigated the persistence and the physiological states of soil-inoculated Pseudomonas protegens (previously Pseudomonas fluorescens) CHA0 (10⁸ CFU g^?1 surface soil) in different soil microbial habitats in a planted ley (Medicago sativa L.) and an uncovered field plot. At 72 days, colony counts of the inoculant were low in surface soil (uncovered plot) and earthworm guts (ley plot), whereas soil above the plow pan (uncovered plot), and the rhizosphere and worm burrows present until 1.2 m depth (ley plot) were survival hot spots (10⁵–10⁶ CFU g^?1 soil). Interestingly, strain CHA0 was also detected in the subsoil of both plots, at 10²–10⁵ CFU g^?1 soil between 1.8 and 2 m depth. However, non-cultured CHA0 cells were also evidenced based on immunofluorescence microscopy. Kogure's direct viable counts of nutrient-responsive cells showed that many more CHA0 cells were in a viable but non-culturable (VBNC) or a non-responsive (dormant) state than in a culturable state, and the proportion of cells in those non-cultured states depended on soil microbial habitat. At the most, cells in a VBNC state amounted to 34% (above the plow pan) and those in a dormant state to 89% (in bulk soil between 0.6 and 2 m) of all CHA0 cells. The results indicate that field-released Pseudomonas inoculants may persist at high cell numbers, even in deeper soil layers, and display a combination of different physiological states whose prevalence fluctuates according to soil microbial habitats.     

Stenotrophomonas rhizophila DSM14405T promotes plant growth probably by altering fungal communities in the rhizosphere

Stenotrophomonas rhizophila DSM14405^T is of high biotechnological interest as plant growth stimulator, especially for salinated conditions. The objective of this study was to determine the effect of plant species (cotton, tomato, and sweet pepper) on colonisation and plant growth promotion of this beneficial bacterium in gnotobiotic systems and in non-sterile soil. All plant structures (leaves, stems, and roots) were densely colonised by DSM14405^T reaching up to 10⁹ cells g^?1 fresh weight; under gnotobiotic conditions the abundances were 4–5 orders of magnitude higher than in non-sterile soil. Under non-sterile conditions and ambient humidity, tomato shoots were more densely colonised than shoots of sweet pepper and cotton. S. rhizophila DSM14405^T was shown to grow endophytically and colonise the vicinity of root hairs of tomato. Plant growth promotion was particularly apparent in tomato. In general, the impact of plant species on colonisation and plant growth promotion was more pronounced in soil than under gnotobiotic conditions and likely due to the control of diseases and deleterious microorganisms. S. rhizophila DSM14405^T was shown to control diseases in sweet pepper and in cotton. Molecular profiling via single strand conformation polymorphism of internal transcribed spacers and 16S rRNA genes (PCR-single strand conformational polymorphism (SSCP)) revealed that S. rhizophila DSM14405^T strongly affected fungal, but not bacterial communities in the rhizosphere of tomato and sweet pepper. Major SSCP bands related to uncultured fungi and Candida subhashii, disappeared in tomato rhizosphere after Stenotrophomonas treatment. This suggests an indirect, species-specific plant growth promotion effect of S. rhizophila via the elimination of deleterious rhizosphere organisms.     

The inhibiting effect of nitrate fertilisation on methane uptake of a temperate forest soil is influenced by labile carbon

Upland soils are the most important terrestrial sink for the greenhouse gas CH₄. The oxidation of CH₄ is highly influenced by reactive N which is increasingly added to many ecosystems by atmospheric deposition and thereby also alters the labile C pool in the soils. The interacting effects of soil N availability and the labile C pool on CH₄ oxidation are not well understood. We conducted a laboratory experiment with soil columns consisting of homogenised topsoil material from a temperate broad-leaved forest to study the net CH₄ flux under the combined or isolated addition of NO ₃ ^? and glucose as a labile C source. Addition of NO ₃ ^? and glucose reduced the net CH₄ uptake of the soil by 86% and 83%, respectively. The combined addition of both agents led to a nearly complete inhibition of CH₄ uptake (reduction by 99.4%). Our study demonstrates a close link between the availability of C and N and the rate of CH₄ oxidation in temperate forest soils. Continued deposition of NO ₃ ^? has the potential to reduce the sink strength of temperate forest soils for CH₄.     

Accumulation of Miscanthus‐derived carbon in soils in relation to soil depth and duration of land use under commercial farming conditions

Bioenergy is becoming an important option in Global Change mitigation policy world‐wide. In agriculture, cultivation of energy crops for biodiesel, biogas, or bioethanol production received considerable attention in the past decades. Beyond this, the cultivation of Miscanthus, used as solid fuel for combustion, may lead to an increase in soil organic matter content compared to other agricultural land use, since C‐sequestration potential in soils of Miscanthus crops is high due to, e.g., high amounts of harvest residues. This may indirectly contribute to a reduction of atmospheric CO₂ concentration. The objective of the present work was to investigate the development of soil organic carbon and Miscanthus‐derived C contents, as well as to estimate carbon stocks in soils cultivated with Miscanthus using ¹³C‐natural‐abundance technique. The investigations were carried out in relation to soil depth up to 150 cm in a sequence of 2, 5, and 16 y of cultivation relative to a reference soil cultivated with cereals. Amounts of total organic C (TOC) and Miscanthus‐derived C (Miscanthus‐C) increased with increasing duration of cultivation. For example, TOC increased from 12.8 to 21.3 g C kg^–1 after 16 y of cultivation at the depth of 0–15 cm, whereby the portion of Miscanthus‐C reached 5.8 g C kg^–1. Also within deeper soil layers down to 60 cm depth a significant enhancement of Miscanthus‐C was detectable even though TOC contents were not significantly enhanced. At soil depth below 60 cm, no significant differences between treatments were found for Miscanthus‐C. Within 16 y of continuous commercial farming, Miscanthus stands accumulated a total of 17.7 Mg C ha^–1 derived from Miscanthus residues (C4‐C), which is equivalent to 1.1 Mg C4‐C ha^–1 y^–1. The annual surplus might function as CO₂ credit within a greenhouse‐gas balance. Moreover, the beneficial properties of Miscanthus cultivation combined with a low requirement on fertilization may justify the status of Miscanthus as a sustainable low‐input bioenergy crop.     

Antimicrobial and Antimycobacterial Activity of Cyclostellettamine Alkaloids from Sponge Pachychalina sp.

Cyclostellettamines A – F (1 – 6) isolated from the sponge Pachychalina sp. and cyclostellettamines G - I, K and L (7 – 11) obtained by synthesis were evaluated in bioassays of antimicrobial activity against susceptible and antibiotic-resistant Staphylococcus aureus, Pseudomonas aeruginosa and antibiotic-susceptible Escherichia coli and Candida albicans, as well as in antimycobacterial activity against Mycobacterium tuberculosis H37Rv bioassays. The results obtained indicated that cyclostellettamines display different antimicrobial activity depending on the alkyl-chain size, suggesting that, if a mechanism-of action is implied, it is dependent on the distance between the two pyridinium moieties of cyclostellettamines.     

Analysis of Flavan-3-ols and procyanidins in food samples by reversed phase high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry (RP-HPLC-ESI-MS/MS)

Concentrations of the main dimeric and trimeric procyanidins (PC) and their monomeric constitutive units catechin (CT) and epicatechin (EC) were determined in food samples by using reversed phase high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry (RP-HPLC-ESI-MS/MS). In a first step, 12 PCs (PC B1, B2, B3, B4, B5, B6, B7, B8, C1, C2, and A2 and cinnamtannin B1), of which most are not commercially available, were isolated from plant materials or synthesized and purified by a combination of column chromatographic separation techniques with different stationary phases. These PCs in combination with CT and EC were used as standard substances for identification and quantification during the following screening of food samples by RP-HPLC-ESI-MS/MS analysis. The main focus of the newly developed RP-HPLC-ESI-MS/MS method is the compensation of matrix effects by using the echo-peak technique simulating internal standard injection. The suitability of this new method was demonstrated by the determination of recovery rates being 90% or higher. Use of this method allowed the determination of patterns and concentrations of PCs in 55 food samples.