Remote sensing of biotic and abiotic stress for irrigation management of cotton

The applicability of commercially available remote sensing instrumentation was evaluated for site-specific management of abiotic and biotic stress on cotton (Gossypium hirsutum L.) grown under a center pivot low energy precision application (LEPA) irrigation system. This study was conducted in a field where three irrigation regimes (100%, 75%, and 50% ET_c) were imposed on areas of Phymatotrichum (root rot) with the specific objectives to (1) examine commercial remote sensing instrumentation for locating areas showing biotic and abiotic stress symptomology in a cotton field, (2) compare data obtained from commercial aerial infrared photography to that collected by infrared transducers (IRTs) mounted on a center pivot, (3) evaluate canopy temperature changes between irrigation regimes and their relationship to lint yield with IRTs and/or IR photography, and (4) explore the use of deficit irrigation and the use of crop coefficients for irrigation scheduling. Pivot-mounted IRTs and an IR camera were able to differentiate water stress among irrigation regimes. The IR camera distinguished between biotic (root rot) and abiotic (drought) stress with the assistance of groundtruthing. The 50% ET_c regime had significantly higher canopy temperatures than the other two regimes, which was reflected in significantly lower lint yields when compared to the 75% and 100% ET_c regimes. Deficit irrigation down to 75% ET_c had no impact on lint yield, indicating that water savings were possible without reducing yield.     

The structures of COPI-coated vesicles reveal alternate coatomer conformations and interactions

Transport between compartments of eukaryotic cells is mediated by coated vesicles. The archetypal protein coats COPI, COPII, and clathrin are conserved from yeast to human. Structural studies of COPII and clathrin coats assembled in vitro without membranes suggest that coat components assemble regular cages with the same set of interactions between components. Detailed three-dimensional structures of coated membrane vesicles have not been obtained. Here, we solved the structures of individual COPI-coated membrane vesicles by cryoelectron tomography and subtomogram averaging of in vitro reconstituted budding reactions. The coat protein complex, coatomer, was observed to adopt alternative conformations to change the number of other coatomers with which it interacts and to form vesicles with variable sizes and shapes. This represents a fundamentally different basis for vesicle coat assembly.     

Evaluation of Commercial‐scale Approaches for Cryopreservation of White Crappie,Pomoxis annularis,Sperm

Crappie, Pomoxis spp., are popular game fish throughout North America and are produced by public and private hatcheries. However, production is limited by a lack of information on tank culture and induced spawning methods. Development of techniques for storage of sperm and in vitro fertilization would increase flexibility in spawning. Therefore, techniques for sperm cryopreservation were examined in white crappie, Pomoxis annularis. Sperm from adult wild white crappie were used to evaluate sperm extender, cryoprotectant agent and concentration, and cooling technique based on post‐thaw sperm motility. Percent egg fertilization was also compared between sperm stored in the two best cryopreservation protocols and two different osmotic activator solutions. Sperm were cryopreserved using treatment combinations of two extenders (350 mOsmol/kg Hanks' balanced salt solution [HBSS] and 350 mOsmol/kg Ca²⁺free HBSS) and two cryoprotectants (dimethyl sulfoxide [DMSO] and methanol) at concentrations of 5, 10, and 15% that were cooled at four different rates: 5, 10, 20, and 40 C/min. Post‐thaw sperm motility and fertilization rates indicated white crappie sperm can be cryopreserved using either extender, cryoprotectants of either 5% DMSO or 10% methanol, and cooling at 40 C/min. A follow‐up experiment demonstrated sperm in suspensions on ice retained viability after overnight transport.     

The suitability of VIE tags to assess stock enhancement success in juvenile European lobsters (Homarus gammarus)

Assessments of stock enhancement programmes for European lobsters (Homarus gammarus) require mark‐recapture analysis of stocked individuals. However, established tag technology is deemed unsuitable for extensive use by many current lobster hatcheries, particularly upon the early juvenile stages. We tested the suitability of fluorescent Visible Implant Elastomer (VIE) tags for use in 5‐month‐old juvenile lobsters. Three treatment groups comprising 348 cultured lobsters in total were used to examine survival, growth and tag retention, and to assess mobility, shelter use and moulting behaviours. Tagging had no significant effect on lobster survival, growth, mobility, shelter use or moult frequency. Survival over 7 weeks was 75% among lobsters tagged with two elastomers, 76% in those with one elastomer and 74% among untagged controls. Mortality during moulting did not increase in tagged (6%) compared to untagged lobsters (9%). We found no evidence that VIE tags cause any negative effects that would be expected to inhibit survival upon wild release, but tag loss had reached 12% in both tagged treatments after 7 weeks and showed no sign of abating. Our study suggests that VIEs effectiveness in discerning cultured lobsters long after wild release may be limited when used in smaller juveniles.     

Aquaculture Techniques for Crappie,Pomoxis spp., Culture

Extensive crappie, Pomoxis spp., culture has been practiced for decades, however, knowledge of crappie aquaculture methods is limited. The following review synthesizes existing research on crappie aquaculture and identifies knowledge gaps where further research is needed. Topics such as life history, tank culture, feeding, reproduction and spawning, larval rearing, transport and harvest, triploidy, hybridization, and out‐of‐season spawning were reviewed. The outcome is a better understanding of hindrances preventing crappie aquaculture development in the past, particularly tank culture and induced spawning techniques, and specific research objectives with potential to enhance recreational and commercial production.     

Collection of urban tree products by households in poorer residential areas of three South African towns

The high rates of urban in-migration and poverty common in many developing country towns potentially increases the reliance of urban populations on the direct benefits provided by trees. Yet understanding of the extent of such use and the sources of these tree products is limited. Here we report on the extent of use of urban tree products by 450 households in the poorer areas of three towns along a rainfall gradient based on household questionnaires. We considered the proportion of households making use of each of several tree products and the collection or purchasing frequency which we disaggregated by source of the product, including trees in homesteads, urban spaces, edges of towns and via purchase from traders. Most households (91%) used firewood, which was most frequently collected from the urban fringe or purchased, although one-third at times also collected firewood from trees on their home plot. All households used fruits, most commonly sourced through purchase (98%), but nearly half of whom also supplemented by harvesting fruits from their home plot. Other products used included wood for building, fencing and utensils, herbal medicines, planting material and mulch. Collection of products from urban homestead trees was highest amongst households in the informal settlements and least in the more established townships. Residents of new low-cost housing areas made extensive use of urban tree products harvested in urban spaces because they had fewer homestead trees than residents of informal areas or townships. Overall, urban residents made use of a wide array of tangible products from trees which they sourced from a variety of places, including their homestead plot. This urges that planning agencies ensure that homestead plot sizes or other urban spaces that provide tree products are large enough to support the direct needs of poorer urban residents.     

Association between elevated activity of aryl acylamidase and propanil resistance in Jungle-rice,Echinochloa colona

Aryl acylamidase (aryl-acylamine amidohydrolase, EC 3.5.1.13) activity has been measured in crude extracts from leaves of propanil-susceptible (S) and propanil-resistant (R) biotypes of the grass weed. Echinochloa colona (L.) Link from Columbia. Both specific and total amidase activity increased with plant age up to 15 days (four-leaf stage), then decreased beyond 20 days to about 50% of the maximum at 36 days in both R and S E. colona biotypes. Specific activity with propanil in the R biotype was about 80% of that obtained for rice (Oryza sativa L.), compared to 25% in the susceptible biotype. The specific activity of the propanil amidase was three-fold higher in the R biotype than in the S. Partially purified amidase extracts from rice and both S and R biotypes of E. colona were compared biochemically. Both rice and E. colona amidases had a pH optimum of 7.5 and native relative molecular masses, estimated by gel filtration, of 179 000 and 181 000, respectively. Out of six substrates tested, three produced appreciable activity (propanil, 4-chloroacetanilide and acetanilide) in both rice and E. colona. Michaelis constants showed that the rice amidase had a higher affinity for propanil (0.36 mM) than had the E. colona enzyme (1.1 mM). Carbamates and organo-phosphorus pesticides were shown to inhibit amidase activity in partially purified rice and E. colona extracts. Additional preliminary data have implicated peroxidase in the next step of propanil metabolism in vitro. These data demonstrate that increased aryl acylamidase activity contributes to resistance to the herbicide propanil in E. colona weeds. Also, a biochemical comparison of purified aryl acylamidases from S and R biotypes of E. colona is presented for the first time.     

Interpretation of cloud-climate feedback as produced by 14 atmospheric general circulation models

Understanding the cause of differences among general circulation model projections of carbon dioxide-induced climatic change is a necessary step toward improving the models. An intercomparison of 14 atmospheric general circulation models, for which sea surface temperature perturbations were used as a surrogate climate change, showed that there was a roughly threefold variation in global climate sensitivity. Most of this variation is attributable to differences in the models' depictions of cloud-climate feedback, a result that emphasizes the need for improvements in the treatment of clouds in these models if they are ultimately to be used as climatic predictors.     

High-quality binary protein interaction map of the yeast interactome network

Current yeast interactome network maps contain several hundred molecular complexes with limited and somewhat controversial representation of direct binary interactions. We carried out a comparative quality assessment of current yeast interactome data sets, demonstrating that high-throughput yeast two-hybrid (Y2H) screening provides high-quality binary interaction information. Because a large fraction of the yeast binary interactome remains to be mapped, we developed an empirically controlled mapping framework to produce a "second-generation" high-quality, high-throughput Y2H data set covering approximately 20% of all yeast binary interactions. Both Y2H and affinity purification followed by mass spectrometry (AP/MS) data are of equally high quality but of a fundamentally different and complementary nature, resulting in networks with different topological and biological properties. Compared to co-complex interactome models, this binary map is enriched for transient signaling interactions and intercomplex connections with a highly significant clustering between essential proteins. Rather than correlating with essentiality, protein connectivity correlates with genetic pleiotropy.