Identifying, understanding, and describing spatial processes in agricultural landscapes — four case studies

To evaluate the quality of the ecosystem and for making resources and land management decisions landscapes have to be assessed quantitatively. For a better understanding of landscape processes and their characterization, the analysis of the inherent variability is a major factor. Four case studies in which problems associated with landscape analysis are discussed. Spatial processes remain a main focus, as their analysis provides information on the relation between relevant state variables in agricultural landscapes. Variogram analysis showed that mineral soil nitrogen (N_min) sampled in a field at different scales, domains, and times is an instationary spatial process. Spatial association of grain yield, soil index and remotely sensed vegetation index may not be identifiable from kriged contour maps as local coincidence may be obscured behind classified areas. Crop yield in subsequent years and remotely sensed information are not related if a unique response is assumed. An alternative data stratification procedure is described here for the identification of different response functions in agricultural ecosystems. Processes of crop yield and underlying variables are described in autoregressive state-space models. This technique incorporates both deterministic and stochastic relations between different variables and is based on relative changes in space.     

Carbon dynamics determined by natural C abundance in microcosm experiments with soils from long-term maize and rye monocultures

Understanding carbon dynamics in soil is the key to managing soil organic matter. Our objective was to quantify the carbon dynamics in microcosm experiments with soils from long-term rye and maize monocultures using natural ¹³C abundance. Microcosms with undisturbed soil columns from the surface soil (0-25 cm) and subsoil (25-50 cm) of plots cultivated with rye (C₃-plant) since 1878 and maize (C₄-plant) since 1961 with and without NPK fertilization from the long-term experiment ‘Ewiger Roggen’ in Halle, Germany, were incubated for 230 days at 8 °C and irrigated with 2 mm 10⁻² M CaCl₂ per day. Younger, C₄-derived and older, C₃-derived percentages of soil organic carbon (SOC), dissolved organic carbon (DOC), microbial biomass (C_mic) and CO₂ from heterothropic respiration were determined by natural ¹³C abundance. The percentage of maize-derived carbon was highest in CO₂ (42-79%), followed by C_mic (23-46%), DOC (5-30%) and SOC (5-14%) in the surface soils and subsoils of the maize plots. The percentage of maize-derived C was higher for the NPK plot than for the unfertilized plot and higher for the surface soils than for the subsoils. Specific production rates of DOC, CO₂-C and C_mic from the maize-derived SOC were 0.06-0.08% for DOC, 1.6-2.6% for CO₂-C and 1.9-2.7% for C_mic, respectively, and specific production rates from rye-derived SOC of the continuous maize plot were 0.03-0.05% for DOC, 0.1-0.2% for CO₂-C and 0.3-0.5% for C_mic. NPK fertilization did not affect the specific production rates. Strong correlations were found between C₄-derived C_mic and C₄-derived SOC, DOC and CO₂-C (r≥0.90), whereas the relationship between C₃-derived C_mic and C₃-derived SOC, DOC and CO₂-C was not as pronounced (r≤0.67). The results stress the different importance of former (older than 40 years) and recent (younger than 40 years) litter C inputs for the formation of different C pools in the soil.     

Aroma quality differentiation of pyrazine derivatives using self-organizing molecular field analysis and artificial neural network

The encoding of various aroma impressions and the distinction between different aroma qualities are unsolved problems, as differences between aroma impressions can be described only in a qualitative but not in a quantitative manner. As a consequence, classifications of various aroma qualities cannot easily be performed by standard QSAR methods. To find a proper way to encode aroma impressions for SAR studies, a total of 50 pyrazine-based aroma compounds showing the aroma quality of earthy, green-earthy, or green are analyzed. Special attention is thereby turned on the mixed aroma impression green-earthy. Classifications on the whole data set as well as on smaller subsets are calculated using self-organizing molecular field analysis (SOMFA) and artificial neural networks (ANNs). SOMFA classifies between two or three aroma impressions, leading to models satisfying in predictive power. ANN analysis using multilayer perceptron network architecture with one hidden layer and nominal output as well as genetic regression neural network) with two hidden layers and numerical output both lead to a rather good performance rate of 94%.     

Monoclonal antibodies to equine CD23 identify the low-affinity receptor for IgE on subpopulations of IgM+ and IgG1+ B-cells in horses

CD23, also called FcεRII, is the low-affinity receptor for IgE and has first been described as a major receptor regulating IgE responses. In addition, CD23 also binds to CD21, integrins and MHC class II molecules and thus has a much wider functional role in immune regulation ranging from involvement in antigen-presentation to multiple cytokine-like functions of soluble CD23. The role of CD23 during immune responses of the horse is less well understood. Here, we expressed equine CD23 in mammalian cells using a novel IL-4 expression system. Expression resulted in high yield of recombinant IL-4/CD23 fusion protein which was purified and used for the generation of monoclonal antibodies (mAbs) to equine CD23. Seven anti-CD23 mAbs were further characterized. The expression of the low-affinity IgE receptor on equine peripheral blood mononuclear cells was analyzed by flow cytometric analysis. Cell surface staining showed that CD23 is mainly expressed by a subpopulation of equine B-cells. Only a very few equine T-cells or monocytes expressed CD23. CD23(+) B-cells were either IgM(+) or IgG1(+) cells. All CD23(+) cells were also positive for cell surface IgE staining suggesting in vivo IgE binding by the receptor. Two of the CD23 mAbs detected either the complete extracellular region of CD23 or a 22kDa cleavage product of CD23 by Western blotting. The new anti-CD23 mAbs provide valuable reagents to further analyze the roles of CD23 during immune responses of the horse in health and disease.     

Improved cadmium sorption isotherms by the determination of initial contents using the radioisotope 109Cd

Cadmium (Cd) sorption isotherms were estimated by two different analytical approaches to assess the influence of initial Cd concentrations of soil matrix on the sorption of added Cd. For the laboratory experiments a heterogeneous set of samples was collected to include a wide range of different initial Cd concentrations. Comparison of both analytical methods (conventional analysis, radioanalysis) resulted in a strong conformity of Cd contents in solution at equilibrium. The calculated Cd concentrations in the soil solid phase differ according to the analytical approach for considering the initial contents. The determination of the initial contents by the proposed radioanalytical method with ¹⁰⁹Cd resulted in long linear Freundlich‐isotherms, even in the low concentration range. Thus, radioanalysis seems to be the most suitable method to recognise the initial contents of Cd in soil. EDTA extractable Cd represent the initial concentrations, which are averaged over solid and liquid phase. However, depending on the sorption characteristics of the soil these rates vary. In the investigated set of soil samples 52.3 to 99.3% of Cd must be added to the solid phase.     

Sward patterns created by patch grazing are stable over more than a decade

Under extensive grazing, a mosaic pattern of frequently defoliated short patches and rarely defoliated tall patches is often formed. The agronomic and ecological consequences of this patch‐grazing pattern strongly depend on its stability between successive years. We assessed patch structure and temporal stability under three intensities of cattle stocking (moderate, lenient and very lenient) in a cattle grazing experiment established in 2002. Aerial images of the whole area taken in 2005, 2010, 2013 and 2015 were classified into short and tall patches using random forest classification. These were complemented by annual sward height measurements (2007‐2017) at 10 permanent plots per paddock, which were classified into sward height classes. The mean proportion (0.72, 0.32, 0.19) and size of short patches decreased with stocking intensity, while size of tall patches increased. Inter‐annual stability depended on patch type and stocking intensity and was particularly high for the respective dominant patch type. Of the short patch area in 2015, 0.62, 0.29 and 0.30 were classified as short in all four aerial images under moderate, lenient and very lenient grazing, respectively; the corresponding proportions for tall patches were 0.10, 0.53 and 0.65. Our results imply that short and tall patches experience persistent differences in local grazing intensity over extended periods. The long‐term effects of this heterogeneity on soil properties and vegetation composition need to be monitored to assess agronomic sustainability and ecological potential of patch‐grazed pastures.     

Primary productivity in patches of heterogeneous swards after 12 years of low-intensity cattle grazing

In low-intensity grazing systems, patch grazing leads to a mosaic structure of short (frequently defoliated) and tall (rarely defoliated) patches, with the stocking rate determining the proportion of these patch types on the pasture. Little is known about the long-term effects of patch grazing on the productivity of contrasting sward height patches developed under varying stocking rates. On a 12-year low-intensity cattle pasture we investigated aboveground net primary productivity (ANPP) and its seasonal variation in different patch types (‘short’, ‘medium’ and ‘tall’) under three stocking rates (‘moderate’, ‘lenient’ and ‘very lenient’) over two years. Additionally, we determined stocks of soil phosphorus, potassium and magnesium as well as soil pH. ANPP was affected by an interaction of patch type and stocking rate and ranged from less than 300 g/m² in short patches under very lenient stocking to more than 1,000 g/m² in medium patches under moderate stocking. In contrast with observations at the start of the experiment, ANPP in short patches was similar to or less than that in medium and tall patches. As topsoil phosphorus and potassium stocks were lowest in short patches, this indicates a long-term redistribution of nutrients by grazing animals, which limits short-patch productivity. Productivity of medium patches increased with stocking rate, and soil potassium concentration showed a similar trend, pointing towards enhanced nutrient cycling under more intensive stocking. We conclude that nutrient redistribution may lead to increasing trade-offs between ecological and agronomic aims in long-term low-intensity grazing systems.     

Societal Costs of Late Blight in Potato and Prospects of Durable Resistance Through Cisgenic Modification

In the European Union almost 6 Mha of potatoes are grown representing a value of close to €6,000,000,000. Late blight caused by Phytophthora infestans causes annual losses (costs of control and damage) estimated at more than €1,000,000,000. Chemical control is under pressure as late blight becomes increasingly aggressive and there is societal resistance against the use of environmentally unfriendly chemicals. Breeding programmes have not been able to markedly increase the level of resistance of current potato varieties. New scientific approaches may yield genetically modified marker-free potato varieties (either trans- and/or cisgenic, the latter signifying the use of indigenous resistance genes) as improved variants of currently used varieties showing far greater levels of resistance. There are strong scientific investments needed to develop such improved varieties but these varieties will have great economic and environmental impact. Here we present an approach, based on (cisgenic) resistance genes that will enhance the impact. It consists of five themes: the detection of R-genes in the wild potato gene pool and their function related to the various aspects in the infection route and reproduction of the late blight causing pathogen; cloning of natural R-genes and transforming cassettes of single or multiple (cisgenic) R-genes into existing varieties with proven adaptation to improve their value for consumers; selection of true to the wild type and resistant genotypes with similar qualities as the original variety; spatial and temporal resistance management research of late blight of the cisgenic genetically modified (GM) varieties that contain different cassettes of R-genes to avoid breaking of resistance and reduce build-up of epidemics; communication and interaction with all relevant stakeholders in society and transparency in what research is doing. One of the main challenges is to explain the different nature and possible biological improvement and legislative repercussions of cisgenic GM-crops in comparison with transgenic GM-crops. It is important to realize that the present EU Directive 2001/18/EC on GM crops does not make a difference between trans- and cisgenes. These rules were developed when only transgenic GM plants were around. We present a case arguing for an updating and refinement of these rules in order to place cisgenic GM-crops in another class of GM-plants as has been done in the past with (induced) mutation breeding and the use of protoplast fusion between crossable species.     

技术选择中农户意愿选择与实际选择的差异因素分析

基于“有限理性经济人”假说,以农户对户用沼气技术的选择为例,实证分析了农户在不确定条件下的决策过程,探讨了影响农户技术选择行为的因素.研究结果表明,农户对技术的意愿选择和实际选择具有较高的一致性,实际选择受到意愿选择和农户禀赋及决策环境的共同影响.因此,现阶段改变农业技术推广模式和改善农户相关资源约束状况,将是推动我国农业技术推广的重要途径.