Importance and genetic diversity of vegetable-infecting tospoviruses in India

A survey for Peanut bud necrosis virus (PBNV), Watermelon bud necrosis virus (WBNV), Capsicum chlorosis virus (CaCV), and Iris yellow spot virus (IYSV) was conducted between 2002 and 2009 in the major vegetable-growing areas in India. PBNV was documented widely in tomato and chili peppers in 14 states representing southern, north-western, north-eastern, and central regions and WBNV was predominantly detected in watermelons and cucurbits in all except north-eastern regions. In addition, the expanded host range of PBNV to watermelons and other cucurbits and WBNV to tomato and chili peppers was observed leading to natural mixed infection of the two viruses. IYSV was found in onion in southern, central, and north-eastern regions and CaCV in tomato and chili peppers in northern and southern regions, respectively. Phylogenetic analysis of the nucleocapsid gene revealed segregation of field isolates of PBNV and WBNV into two distinct subclades, whereas isolates of CaCV and IYSV each clustered into a single clade. A proposal for establishing WBNV as a distinct tospovirus species is made based on the molecular characterization of small- (S) and medium- (M) RNA segments.     

Molecular characterization of Citrus yellow mosaic badnavirus (CMBV) isolates revealed the presence of two distinct strains infecting citrus in India

Citrus yellow mosaic badnavirus (CMBV) is a non-enveloped, bacilliform DNA virus and the etiologic agent of yellow mosaic disease of citrus in India. The disease was initially reported from the southern parts of India and has now spread to other parts of the country. It is a serious disease of sweet orange (Citrus sinensis) in southern India, where it causes significant yield losses. During a recent survey of citrus groves in the Nagpur region, central India, characteristic mosaic symptoms were observed in mandarin orange (Citrus reticulata) and sweet orange. Virus transmission studies, electron microscopy, PCR amplification and sequencing of cloned PCR products from samples showing mosaic symptoms confirmed the presence of a badnavirus. The CMBV–Nagpur isolate could be transmitted to the Rangpur lime (C. limonia) and acid lime (Citrus aurantifolia) by graft inoculation. Sequence analysis of a segment of ORF-III region and intergenic region (IR) of the viral genome revealed that CMBV–Nagpur isolate formed a distinct clade along with some previously reported isolates that are known to infect acid lime and Rangpur lime. CMBV isolates that infect citrus species other than the acid lime and Rangpur lime formed a second clade. Based on the transmission studies and phylogenetic analyses, it was concluded that at least two strains of CMBV exist in India currently.     

Radiation-induced enhancement of antioxidant contents of soybean (Glycine max Merrill)

Soybean samples were treated with gamma-radiation doses between 0.5 and 5 kGy for achieving insect disinfestation and microbial decontamination. Nutritional quality of soybeans with respect to antioxidant isoflavone content was tested in radiation-treated and untreated samples. Changes in major isoflavones such as genistein, diadzein, glycetein, and their glycosides were monitored by high-performance liquid chromatography. Interestingly, a decrease in content of glycosidic conjugates and an increase in aglycons were noted with increasing radiation dose. Antioxidant potential measured as percent 1,1-diphenyl-2-picrylhydrazyl scavenging activity showed an increasing trend with dose, indicating that radiation processing as a method of food preservation has a positive nutritional implication.     

Development of Indian mustard [Brassica juncea (L.) Czern.] core collection based on agro-morphological traits

Genetic Resources and Crop Evolution - Indian mustard [Brassica juncea (L.) Czern.] is a major edible oil crop of India. The Indian Council of Agricultural Research—National Bureau of Plant...     

Estimation of bulk density of waterlogged soils from basic properties

Pedotransfer functions (PTFs) to predict bulk density (BD) from basic soil data are presented. Available data pertaining to seasonally impounded shrink–swell soils of Jabalpur district in the Madhya Pradesh state of India were used for the study. The data included horizon-wise information of 41 soil profiles in the study area covering nearly 5 million ha. Six independent variables, namely textural data (sand, silt and clay), field capacity (FC), permanent wilting point (PWP) and organic carbon content (OC) were used as input in hierarchical steps to establish dependencies, with bulk density as the dependent variable, using statistical regression and artificial neural networks. The PTFs derived using neural networks [average root mean square error (RMSE) 0.05] were relatively better than statistical regression PTFs (average RMSE > 0.1). The best-performing PTFs required input data on sand, silt content, FC and PWP, with lowest prediction errors (RMSE 0.01, maximum absolute error (MAE) 0.01) and highest values of index of agreement (d, 0.95) and R ² (0.65). Use of measures of structure, as well as information on pore structure, was found to be essential to derive acceptable PTFs. Inclusion of OC as an input variable showed relatively better fitting to the training data set, implying an underlying relationship between OC and BD, but the neural networks could not mimic the relationship when tested against subset.     

Identification of QTLs for stay green trait in wheat (<Emphasis Type="Italic">Triticum aestivum</Emphasis> L.) in the ‘Chirya 3’ × ‘Sonalika’ population

Stay green or delayed senescence is considered to play a crucial role in grain development in wheat when assimilates are limited. We identified three QTLs for stay green on the chromosomes 1AS, 3BS and 7DS using a recombinant inbred (RI) population developed by making crosses between the stay green parent ‘Chirya 3’ and non-stay green ‘Sonalika’. The RI lines were evaluated in natural field conditions for 2 years in replicated trial. The QTL on chromosome 1A was identified in both the years, while the QTLs on 3BS and 7DS were identified only in 1st and 2nd year, respectively. The QTLs explained up to 38.7% of phenotypic variation in a final simultaneous fit. The alleles for higher stay green values derived from the stay green parent ‘Chirya 3’. The QTLs were named as QSg.bhu-1A, QSg.bhu-3B and QSg.bhu-7D. The QTL QSg.bhu-3B and QSg.bhu-7D were placed in the 3BS9-0.57-0.78 and 7DS5-0.36-0.61 deletion bins, respectively.     

Influence of peach (Prunus persica Batsch) phenological stage on the short-term changes in oxidizable and labile pools of soil organic carbon and activities of carbon-cycle enzymes in the North-Western Himalayas

The labile organic carbon(C) and C-related enzymes are sensitive indicators capturing alterations of soil organic matter(SOM),even in a short-time scale.Although the effects of crop husbandry and land use change on these attributes have been well studied,there is no consensus about how plant phenology may impact them.This study aimed to determine the short-term effect of six distinct phenological stages(PS-1:full bloom;PS-2:fruit set;PS-3:pit hardening;PS-4:physiological maturity;PS-5:60 d after physiological maturity;and PS-6:fall) of peach on the changes in soil organic carbon(SOC) fractions of different oxidizability,labile C pools,and C-cycle enzyme activities in soils,for two consecutive years(2015 and 2016) in the North-Western Himalayas(NWH).Peach rhizosphere soils were sampled at the topsoil(0–15 cm) and subsoil(16–30 cm) layers,along with rhizosphere soils from adjacent perennial grasses,which served as a control.Values for most of the assessed parameters,including very labile C,labile C,microbial biomass C,permanganate oxidizable C,dissolved organic C,mineralizable C,amylase activity,and carboxymethyl-cellulase activity,were significantly(P ≤ 0.05) higher at PS-3 than at other phenological stages of peach.Conversely,a sudden decline in these soil variables was recorded at PS-5,followed by a slight buildup at PS-6,particularly in the topsoil of the peach orchard.Short-term changes in organic C fractions of different oxidizability,influenced by peach phenological stage,significantly(P ≤ 0.05) affected C management index,C pool index,and lability index.Both the C management index and lability index showed their highest values at PS-3 and their lowest values at PS-5,clearly indicating short-term accretion and depletion of SOC,in tandem with the peach phenological events.Principal component analysis suggested that a composite of soil indicators,including microbial biomass C,dissolved organic C,amylase,and invertase,could help detect short-term changes in SOC content.It is concluded that peach phenological events had a major impact on the short-term variations of the studied soil variables,which could be attributed to changes in the above-and belowground plant residues,as well as the extent of nutrients and water acquisition.     

Contribution of Post-Anthesis Growth and Manganese Dynamics to Differential Grain Yield in Different Wheat Species

Manganese (Mn) deficiency has become a serious nutritional problem for wheat grown in alkaline coarse textured soil. The study aimed to investigate post-anthesis Mn partitioning in different wheat species. Cultivars of bread wheat (‘PBW509’, ‘DBW17’, ‘PBW550’ and ‘PBW636’); durum wheat (‘PDW291’) and triticale (‘TL2908’) were grown in 6.5 L pots with two treatments of Mn (0 and 50 mg Mn kg^?1 soil) in screen house and harvested at anthesis, 18- days post-anthesis, and maturity to record Mn uptake. Durum cv. ‘PDW291’ retained highest proportion of Mn in its vegetative parts under Mn deficiency resulting into lowest partitioning to the grain and had the lowest grain yield. All bread wheat cv. facilitated superior Mn partitioning to the grain, lesser retention in vegetative organs and higher Mn utilization efficiency, than triticale and durum wheat species. Cultivars producing higher yield on Mn deficit soils are viable alternative to foliar application of Mn.     

Wheat genetic resources enhancement by the International Maize and Wheat Improvement Center (CIMMYT)

The International Maize and Wheat Improvement Center (CIMMYT) acts as a catalyst and leader in a global maize and wheat innovation network that serves the poor in the developing world. Drawing on strong science and effective partnerships, CIMMYT researchers create, share, and use knowledge and technology to increase food security, improve the productivity and profitability of farming systems and sustain natural resources. This people-centered mission does not ignore the fact that CIMMYT’s unique niche is as a genetic resources enhancement center for the developing world, as shown by this review article focusing on wheat. CIMMYT’s value proposition resides therefore in its use of crop genetic diversity: conserving it, studying it, adding value to it, and sharing it in enhanced form with clients worldwide. The main undertakings include: long-term safe conservation of world heritage of both crop resources for future generations, in line with formal agreements under the 2004 International Treaty on Plant Genetic Resources for Food and Agriculture, understanding the rich genetic diversity of two of the most important staples worldwide, exploiting the untapped value of crop genetic resources through discovery of specific, strategically-important traits required for current and future generations of target beneficiaries, and development of strategic germplasm through innovative genetic enhancement. Finally, the Center needs to ensure that its main products reach end-users and improve their livelihoods. In this regard, CIMMYT is the main international, public source of wheat seed-embedded technology to reduce vulnerability and alleviate poverty, helping farmers move from subsistence to income-generating production systems. Beyond a focus on higher grain yields and value-added germplasm, CIMMYT plays an “integrative” role in crop and natural resource management research, promoting the efficient use of water and other inputs, lower production costs, better management of biotic stresses, and enhanced system diversity and resilience.     

Model Studies on Stilling Basins for Pipe Outlets

This paper reports on model studies on energy dissipatorswhich were performed with a view towards developing a shorterand more efficient type of stilling basin for circular pipeoutlets at low Froude numbers. The stilling basin models weretested for two pipe outlet diameters. The outlet Froude numberfor testing ranged from 1.70 to 5.50. The studies reported inthis paper expand on the improvement suggested by Goel andVerma (1999). In all, 133 test runs were made on 19 newmodels. Various configurations of stilling basin models withdifferent sizes, shapes and locations of appurtenances andbasin lengths were tested. The use of a wedge-shaped splitterblock, an impact wall, and the use of wedge-shaped blocks asbaffle blocks resulted in efficient energy dissipation inshorter lengths of stilling basin. A non-dimensional numbertermed as scour index has been used to compare theperformances of various stilling basin models. It was foundthat the length of stilling basin could be reducedconsiderably without affecting the performance by choosing asuitable configuration of the stilling basin. Of theconfigurations tested, the stilling basin model M-24 with tworows of wedge-shaped baffle blocks in a basin length of sixtimes the diameter of pipe outlet (6d) performed better incomparison to USBR impact type VI stilling basin.