Detection and characterization of a rhabdovirus causing mortality in black bullhead catfish,Ameiurus melas

This study fully describes a severe disease outbreak occurred in 2016 in black bullhead catfish farmed in Italy. Affected fish showed nervous clinical signs as well as emaciations and haemorrhagic petechiae on the skin at the fin bases, abdomen and gills. Viral isolation in cell culture allowed the subsequent identification of a rhabdovirus, tentatively named ictalurid rhabdovirus (IcRV), through electron microscopy, immunofluorescence and whole genome sequencing (WGS). The newly isolated virus, together with 14 additional viral strains stored in our repository and detected during similar mortality episodes in the period 1993–2016, was phylogenetically analysed on the basis of the nucleoprotein and the glycoprotein nucleotide and amino acid sequences. The genetic distances among Italian IcRV strains were also estimated. Our results show that all the IcRV strains belong to the genus Sprivivirus and are closely related to the tench rhabdovirus (TenRV). Italian catfish production is constantly decreasing, mainly due to viral infections, which include the newly characterized IcRV. Data presented in this work will assist to investigate the molecular epidemiology and the diffusive dynamics of this virus and to develop adequate surveillance activities.     

Global-scale genetic structure of a cosmopolitan cold-water coral species

• 1. When considering widely distributed marine organisms with low dispersal capabilities, there is often an implication that the distribution of cosmopolitan species is an artefact of taxonomy, constrained by the absence of characters for delimiting either sibling or cryptic species. Few studies have assessed the relationship among populations across the global range of the species' distribution, and the presence of oceanographic barriers that might influence gene flow among populations are underestimated.
• 2. In this study, evolutionary and ecological drivers of connectivity patterns have been inferred among populations of the cold-water coral Desmophyllum dianthus, a common and widespread solitary scleractinian species, whose reproduction strategy and larval dispersal are still poorly unknown.
• 3. The genetic structure of D. dianthus was explored using 30 microsatellites in 347 specimens from 13 localities distributed in the Mediterranean Sea and Atlantic and Pacific Oceans.
• 4. Results clearly reveal genetically differentiated populations in the Northern and Southern Hemispheres (F_ST = 0.16, F_SC = 0.01, F_CT = 0.15, P-values highly significant), and Chilean and New Zealand populations with independent genetic profiles.
• 5. Marine connectivity patterns at different spatial scales are discussed to characterize larval dispersal and gene flow through the Northern and Southern Hemispheres.

     

不同磷水平下雷竹幼苗叶绿素荧光特性

 为了解不同磷水平下雷竹Phyllostachys violascens幼苗叶片叶绿素荧光特性的变化,试验以无性繁殖的雷竹幼苗作为试验材料,采用砂培试验方法,研究了不同磷水平（0,0.5,5.0,50.0,500.0 mg·L^－1）对雷竹幼苗叶绿素荧光参数和光通量密度?鄄光合电子传递速率（P_AR-E_TR）响应曲线的影响。结果表明,随着磷质量浓度的升高,幼苗叶片潜在光化学活性（F_o /F_m）呈逐渐降低趋势,最大光化学效率（F_v /F_m）在0~50.0 mg·L^－1磷质量浓度范围内逐渐下降。磷质量浓度为5.0 mg·L^－1时,初始荧光（F_o）,最大荧光（F_m）,适时最小荧光（F_t）和可变荧光（F_v）均达到最大值,电子传递速率（E_TR）和光系统Ⅱ（PSⅡ）实际光化学效率（Y）较大,光化学猝灭系数（q_P）和非光化学猝灭系数（q_N和N_PQ）相对较低,说明在5.0 mg·L^-1磷质量浓度下,雷竹幼苗叶片的光合能力较强,接近适宜雷竹幼苗生长的磷质量浓度。磷质量浓度过高（50.0和500.0 mg·L^-1）均导致雷竹幼苗叶片E_TR下降,热耗散增加,光化学效率和光量子产额降低。图1表3参20     

Biodegradability Studies of Certain Wood Preservatives in Groundwater as Determined by the Respirometric Bod Oxitop Method

This study focuses on the biodegradability measurements of tall oil-based wood preservatives and their raw materials in groundwater as determined by the respirometric BOD OxiTop method. Certain substances were also analyzed in standard conditions described by OECD 301 F. Results show that creosote oil, a traditional wood preservative, does not biodegrade at all in groundwater over a period of 28 days, while tall oil and linseed oil biodegrade to some degree (13.4% and 14.8%, respectively). On the other hand, degrees of biodegradation of linseed oil, tall oil and creosote oil in the extra mineral and microbe including conditions described by OECD 301 F were 72.9%, 54.3% and 24.9% after 28 days, respectively. Studied raw materials of tall oil-based wood preservative production biodegrade to some degree in groundwater (variability from 11.9% to 18%) and quite effectively in OECD 301 F test (variability from 39% to 71.7%) over a period of 28 days. Abiotic degradation may also be significant with the studied substances.     

The impact of a bio-fertilizer on the soil organic matter status and carbon sequestration—results from a field-scale study

Purpose

The application of bio-fertilizers is one of the management practices that can help to maintain or increase the content of organic matter (OM) and improve soil fertility in arable soils. While some results have been obtained in relation to the influence of bio-fertilizers on organic matter content, less in known about the fractional composition of humus.

Materials and methods

The aim of this study was to determine the effects of the bio-fertilizer UGmax on soil total organic carbon (TOC), dissolved organic carbon (DOC), and the fractional composition of organic matter (C of humic acids (CHAs), C of fulvic acids (CFAs), and C in humins) in the humus horizon of an arable field. Measurements were taken in 2005 before the application of UGmax and in 2008, 3 years after its application, which was done in 2005, 2006, and 2007. Forty soil samples were taken in 2005 (the control year without UGmax), while 20 samples were taken after UGmax treatment and 20 from the control in 2008. Samples were always collected after the plants were harvested.

Results and discussion

After the 3-year period of the experiment, the TOC content was 6.3 % higher in plots on which UGmax was applied in comparison to the control, while the DOC content was 0.19 percentage points lower after 3 years of bio-fertilizer use as compared to the initial year of the experiment. The contribution of DOC to TOC decreased significantly after the application of UGmax in comparison with the control. The content of CFAs and its contribution in the TOC pools in soil without UGmax was higher at the end of the experiment compared to the beginning, while there was an inverse relationship in the soil with the bio-fertilizer. In comparison with the control, organic matter in the soil treated with UGmax had a higher content of C of humic acids, C in humins, and higher CHAs/CFAs ratio.

Conclusions

We conclude that the use of a bio-fertilizer that increases the stable fractions of organic matter provides evidence of an increase in the soil OM stability. In turn, the contribution of the organic matter fractions that are more resistant to decomposition is crucial for increasing soil carbon sequestration.

     

Nitrogen Release from Slow-Release Fertilizers in Soils with Different Microbial Activities

Soil microbial activity is recognized as an important factor affecting nitrogen (N) release from slow-release fertilizers. However,studies on the effect of size and activity of soil microflora on fertilizer degradation have provided contrasting results. To date, no clear relationships exist between soil microbial activity and the release of N from slow-release fertilizers. Hence, the aim of this study was to better understand such relationships by determining the release of N from three slow-release fertilizers in soils with different microbial activities. Soils were amended with urea-formaldehyde (UF), isobutylidene diurea (IBDU), and crotonylidene diurea (CDU). Urea, a soluble fertilizer, was used as the control. Fertilized soil samples were placed in a leaching system, and the release of N was determined by measuring ammonium-N and nitrate-N concentrations in leachates during 90 d of incubation. Non-linear regression was used to fit N leaching rate to a first-order model. In all the treated soils, N was released in the order: urea (89%–100%) IBDU (59%–94%) UF (46%–73%) CDU (44%–56%). At the end of incubation, N released from CDU did not differ (P 0.05) among soils. On the contrary, UF and IBDU released significantly lower (P 0.05) amounts of N in the soil with higher microbial activity and lower pH.The rate constant (K_0) for UF was lower (P 0.05) in the soil with lower pH. Taken together, our results indicated that soil microbial size and microbial activity had a marginal effect on fertilizer mineralization.     

Flavor and quality characteristics of salted and desalted cod (Gadus morhua) produced by different salting methods

Flavor characterization and quality of salt-cured and desalted cod (Gadus morhua) products was studied using sensory analysis and gas chromatography techniques. The products were produced in Iceland using two different processing methods (filleting and splitting) and three different salting procedures, i.e., the old single-step kench salting or a multistep procedure, and presalting (injection and brine salting or only brine salting), which was followed by kench salting. The main difference observed was between fillets and split fish, where the split fish was darker and had stronger flavor characteristics. Comparison of different salting procedures showed that the use of presalting improved the appearance of the salted products, which can be described as increased lightness and reduced yellowness of the products. In the same products, the intensity of curing flavors was milder, as described by sensory analysis and key aroma compounds. Derivatives from lipid and protein degradation contribute to the characteristic flavor of the salted products.     

Physiological and metabolic properties of a digestion-resistant maltodextrin, classified as type 3 retrograded resistant starch

There is a growing interest in highly fermentable dietary fibers having the potential to reduce risks of disease through the production of short-chain fatty acids (SCFA). Recently a digestion-resistant retrograded maltodextrin (RRM), classified as type 3 resistant starch was developed. Systematic work to determine its molecular and physiological properties was carried out to determine (1) the fraction resistant to digestion in vitro and in vivo, (2) its postconsumption effect on blood glucose in healthy volunteers, and (3) its in vitro fermentation pattern, at different ages, by use of pooled fresh human fecal inoculum. RESULTS: The digestion resistant fraction obtained in vivo from ileostomy patients (59.4%) is similar to that obtained by the AOAC method for measuring retrograded resistant starch (59.7%). The relative glycemic response after consumption of 50 g of RRM was 58.5% compared to glucose set as 100%. When exposed to colonic microbiota, in vitro obtained indigestible fractions behave similarly to those obtained in vivo in ileostomy patients. Fermentation of RRM and production of butyric acid is negligible during the first months of life but develops subsequently during weaning. In adults, RRM fermentation results in a high yield of SCFA, with butyrate representing 21-31 mol % of total SCFA. The high yield of SCFA during colonic fermentation, observed from weaning age on, as well as the potential to help reduce glycemic load may be of benefit to a number of health-related functions in the host. Further study on clear clinical end points is warranted.     

Synthesis and antifungal activity of a series of N-substituted [2-(2,4-dichlorophenyl)-3-(1,2,4-triazol-1-yl)]propylamines

A series of N-mono- or N, N-disubstituted [2-(2,4-dichlorophenyl-3-(1,2,4-triazol-1-yl)]propylamines and N-[2-(2,4-dichlorophenyl-3-(1,2,4-triazol-1-yl)propyl]amides were synthesized and tested for their fungicidal activity in vitro and in vivo against a group of plant pathogenic fungi. Some compounds exhibited a fairly good in vitro activity. The replacement of the ether group of tetraconazole with a secondary or tertiary amino group leads to compounds that maintain the antifungal activity on several phytopathogenic fungi, provided that the substituents are not too bulky or lipophilic. The allyl, propargyl, and cyclopropyl groups appear particularly suitable. Although these compounds have some structural similarities with terbinafine and naftifine, which act as squalene epoxidase inhibitors, they maintain the usual mechanism of action of the other triazoles.     

Optimization of a pilot-scale process for producing lupin protein isolates with valuable technological properties and minimum thermal damage

This paper describes a pilot process for obtaining protein isolates from white lupin seed with improved water solubility and technofunctional properties as well as reduced thermal damage. After a careful optimization of the process parameters, two valuable food ingredients were prepared: lupin protein isolate type E, with a useful emulsifying capacity, and lupin protein isolate type F, with a high capability of foam formation and stabilization. The spray-drying process was particularly critical for inducing some thermal damage, but a careful selection of the conditions permitted ingredients having only marginally impaired lysine bioavailability to be obtained. The reproducibility of the protein extraction process was tested on two different lupin varieties.