Integration of independent component analysis with near infrared spectroscopy for evaluation of rice freshness

The storage time and conditions of rice has an enormous effect on its appearance, flavor, and quality of the nutrients; and the acidity of rice usually increases with prolonged storage. Therefore, evaluation of freshness is an important issue for rice quality. In this study, the NIR (near infrared) spectra combined with independent component analysis (ICA) technique was used to evaluate the rice freshness. A total of 180 white rice samples were collected from 6 crop seasons for the purpose of developing an ICA-NIR based procedure for rice freshness as quantified by pH values. Values of pH were determined by a BTB-MR (bromothymol blue – methyl red) method. The best calibration model of white rice was developed using the smoothed first derivative spectra, five ICs and cross-validation; the results indicated that r² (coefficient of determination) = 0.924, and in units of pH, SEC (standard error of calibration) = 0.145, SEP (standard error of prediction) = 0.146, bias = 0.001, and RPD (residual predictive deviation) = 3.65. Freshness of white rice could be distinguished either visually by a 3-dimensional diagram composed from ICs 2, 3 and 4, or statistically by a calibration model. The results show that ICA with NIR has the potential to be adopted as an effective method for evaluating rice freshness.     

The evolutionary relationship between bere barley and other types of cultivated barley

Genetic Resources and Crop Evolution - We used genotyping-by-sequencing to investigate the evolutionary history of bere, the oldest barley variety still cultivated in Britain and possibly in all of...     

The impact of initial concentration of selected pharmaceuticals on their early stage of dissipation in soils

Journal of Soils and Sediments - Dissipation of pharmaceutical compounds entered into the natural environment is an important process minimizing the adverse effects on the living organisms. The aim...     

Spectral sensitivity in the photodegradation of fir wood (Abies alba Mill.) surfaces: colour changes in natural weathering

Activation spectra of wood under natural irradiation were investigated in detail in this work. The main purpose was to study colour changes on the wood surface over time and into the depth during natural light exposure and thus to further contribute to the optimization of surface-protecting treatments. In a natural weathering test, three 80-μm-thick strips of fir wood forming the surface layer of a wood composite were exposed to light under a series of glass cut-off filters. Samples were withdrawn at intervals and tested for colour changes. Identification of the most detrimental wavebands of light causing photodegradation was performed based on recorded colour changes. With chronological development of exposure, the colour changes shifted ever deeper into the surface and further into the visible region of the spectrum. A relatively narrow waveband from 360 to 435 nm was identified in the activation spectra to be the most active band, causing the greatest proportion of recorded colour changes. However, also visible light of wavelengths up to 515 nm significantly contributed to colour changes of the surface layers.     

Mosaic stunting in bareroot Pinus banksiana seedlings is unrelated to colonization by mycorrhizal fungi

Mosaic stunting, the occurrence of random patches of chlorotic seedlings with reduced shoot and diameter growth amidst more robust cohorts within bareroot nurseries, is classically associated with poor colonization by mycorrhizal fungi. We examined possible relationships among soil fertility, mycorrhizas, and random patches of mosaic stunting in bareroot Pinus banksiana Lamb. and suggest this paradigm is not universal. Stunted seedlings were distributed among healthy seedlings, occupied field space for 2–3 years, and used nursery resources (i.e. irrigation, fertilization); consequently high rates of culling at harvest resulted in an economic stress for the nursery. Thus, an understanding of the cause(s) of stunting was necessary. Stunted 1 + 0 seedlings had significantly lower levels of nitrogen, phosphorus, potassium, and zinc than their healthy cohorts, despite similar soil nutrient levels. The numbers of mycorrhizal root tips on stunted and healthy seedlings were similar, and the taxa of mycorrhizal fungi, determined by isolations and DNA sequencing, were not consistently associated with stunted or healthy seedlings. We conclude that differences in Pinus banksiana mycorrhizas are not responsible for mosaic stunting, but may be caused by localized low soil N availability due to uneven distribution of added organic matter amendments.     

Fish and flows: Abiotic drivers influence the recruitment response of a freshwater fish community throughout a regulated lotic system of the Murray-Darling Basin,Australia

1. Fish assemblages in dryland rivers have life-history strategies that have evolved in response to environmental conditions and triggers, particularly water temperatures and flow regimes. The regulation of rivers through the construction of dams, weirs and other water diversion structures has altered natural flow regimes and the associated ecological processes of river systems worldwide.
2. Over a 3-year period, using standardized fish sampling and daily otolith ageing, the recruitment of eight freshwater fish species was monitored in response to various abiotic drivers, including hydrology and water temperatures, throughout the Macquarie River, a large regulated river system of the Australian Murray-Darling Basin.
3. A data-driven statistical classification system is provided that groups species into reproductive guilds, based on their recruitment response to hydrology and water temperature, specifically designed for use in environmental flow management.
4. The eight species were grouped into three distinct reproductive guilds that showed similar recruitment responses to the abiotic drivers. Murray-Darling rainbowfish, Murray cod, and eel-tailed catfish were considered as a single guild, characterized by seasonal recruitment during a relatively narrow thermal window under low to moderate stable discharges. The second group included common carp, bony herring, and golden perch, which recruited primarily in association with larger flow events. Un-specked hardyhead and Australian smelt formed a more differentiated guild, recruiting over a broad range of temperatures and discharges. Limitations associated with using a reproductive guild approach to simplify water management are discussed.
5. This study highlighted important relationships among hydrology, water temperatures, and successful recruitment that can, in turn, be used to inform development of adaptive flow management plans and effective use of environmental water for the conservation management of native fish communities. Important considerations in the design of studies that aim to examine relationships between recruitment and abiotic drivers are also discussed.

     

Analysis of polar lipids in the serum from rats fed shiitake by liquid chromatography-mass spectrometry/mass spectrometry

Consumption of a shiitake mushroom diet has been reported to have effects on serum phospholipids. However, much less is known about the effect on serum polar lipids including lysophospholipids and free fatty acids. In the present study, the effects of a shiitake diet were evaluated on the basis of identification and quantification of individual polar lipid components in rat serum using liquid chromatography-mass spectrometry/mass spectrometry. By comparison with standards and published data, 50 lysophospholipids and 32 free fatty acids were identified, and the concentrations of 27 polar lipids in rat serum were determined. Shiitake diets decreased the levels of all individual polar lipid components in the serum of male rat. The total level of serum polar lipids in males fed 4% shiitake diets (1365.71 mol/L) was significantly lower than that of the control (2270.26 mol/L). However, shiitake diets did not significantly affect the levels of serum polar lipids in female rats.     

Supply of tree-holes limits nest density of cavity-nesting birds in primary and logged subtropical Atlantic forest

Tree cavities are proposed to limit populations and structure communities of cavity-nesting birds. Although the greatest diversity of cavity-nesting birds is found in tropical and subtropical moist forests, little is known about how tropical logging affects the abundance of cavities or cavity-nesting birds. We compared the abundance of cavities and cavity nests between primary and selectively-logged subtropical moist Atlantic forest in Argentina, and conducted the first before-after controlled nest-box addition experiment to determine whether nest sites limit the breeding density of cavity-nesting birds in tropical or subtropical moist forest. Visual inspection of 86 cavities identified through ground-surveys revealed that only 19% were suitable for nesting birds, suggesting that cavity abundance may be overestimated in the literature on tropical forests. Suitable cavities were found in fewer than 1% of 1156 trees <60 cm dbh but 20% of 20 trees >100 cm dbh. Logged forest had half the basal area of primary forest, one third the density of large trees, nine times fewer cavities suitable for nesting birds, and 17 times fewer active nests. When we added nest boxes, nesting density increased on treatment plots but not on control plots in both logged and primary forest, suggesting that cavity supply can limit nest density even in relatively undisturbed forest. This is the first experiment to show how reduced cavity supply in logged tropical forest can limit breeding density of cavity-nesting birds. International initiatives such as forest certification should promote tropical timber management strategies that conserve large live cavity-bearing trees.