Global status of wheat leaf rust caused by <Emphasis Type="Italic">Puccinia triticina</Emphasis>

Leaf rust caused by Puccinia triticina is the most common and widely distributed of the three wheat rusts. Losses from leaf rust are usually less damaging than those from stem rust and stripe rust, but leaf rust causes greater annual losses due to its more frequent and widespread occurrence. Yield losses from leaf rust are mostly due to reductions in kernel weight. Many laboratories worldwide conduct leaf rust surveys and virulence analyses. Most currently important races (pathotypes) have either evolved through mutations in existing populations or migrated from other, often unknown, areas. Several leaf rust resistance genes are cataloged, and high levels of slow rusting adult plant resistance are available in high yielding CIMMYT wheats. This paper summarizes the importance of leaf rust in the main wheat production areas as reflected by yield losses, the complexity of virulence variation in pathogen populations, the role cultivars with race-specific resistance play in pathogen evolution, and the control measures currently practiced in various regions of the world.     

Screening and selecting novel AM fungi and Azotobacter strain for inoculating apple under soil solarization and chemical disinfestation with mulch practices for sustainable nursery management

The objective of this study is to investigate the response of screening, and selection of novel indigenous AM fungal species and Azotobacter chroococcum strains for inoculating apple under different soil disinfestations and moisture conservation mulch practices for sustainable nursery management. Two local AM fungal species namely, Glomus fasciculatum (Thaxter sensu Gerdemann) and Glomus mosseae (Nicol. & Gerd.), and two strains of A. chroococcum viz., A. chroococcum strain-I (AZ₁) and A. chroococcum strain-II (AZ₂) were inoculated at nursery stage under soil solarization, chemical disinfestation and natural soil conditions at four different mulch materials namely, black plastic mulch (BPM), and organic mulches, i.e. grass mulch (GM); cover crops (CC); green manuring + clean cultivation (Gm + Cc). The comparative performance of the seedlings on the impact of local AM species and A. chroococcum strains on growth characteristics, microbial population, root colonization and leaf nutrient status was evaluated. The inoculation of seedlings to G. fasciculatum and AZ₁ increased all growth characteristics (plant height, stem diameter, leaf area and total root length), microbial consortium of the rhizosphere soil and leaf N, P, K and Zn content in all those plots where soil solarization and black plastic mulching was used followed by chemical disinfestations and natural soil conditions at all other mulch types used. These findings suggested that the soil inoculation of G. fasciculatum and AZ₁ strain to seeds and/or the saplings under soil solarization with black plastic mulch attained a desirable plant height and become ready for grafting which however saved a period of 1 year for nursery management compared to traditional nursery raising practice, and thus, it may be a viable and feasible approach to maintain soil productivity under nutrient limited soils for sustainable apple nursery production under temperate rain-fed conditions.     

Morphological, anatomical and molecular investigation into witches’ broom disease of mamejvo (Enicostemma axillare)

Mamejvo (Enicostemma axillare Raynal) is a perennial herb with diversified health benefits. It was found to be affected by a witches?? broom disease under the field conditions at Anand, Gujarat, India. Affected plants were 53.33% reduced in height due to shortened internodes, leading to typical witches?? broom symptoms. Flower size was reduced significantly in the affected plants compared with the healthy ones and their petal color gradually turned green (virescence). Affected plants produced 2.5 times more dry herbage than the normal plants but with less active ingredient (swertiamarin). Symptomatic plants died early while root suckers from such plants failed to establish after transplanting. DAPI stained transverse sections of affected shoot tips showed the presence of discrete greenish fluorescence in the phloem cells under UV light. Amplification of 1.2?kb phytoplasma specific rDNA fragment from diseased tissue confirmed the presence of the pathogen. Further characterization of the pathogen through virtual rDNA?CRFLP pattern and rDNA sequence based phylogeny suggested that the pathogen, Enicostemma witches?? broom phytoplasma, belonged to 16SrII?CC group of ??Ca Phytoplasma aurantifolia??.     

Molecular markers for late blight resistance breeding of potato: an update

Late blight is the most devastating disease of the potato crop that can be effectively managed by growing resistant cultivars. Introgression of resistance (R) genes/quantitative trait loci (QTLs) from the Solanum germplasm into common potato is one of the plausible approaches to breed resistant cultivars. Although the conventional method of breeding will continue to play a primary role in potato improvement, molecular marker technology is becoming one of its integral components. To achieve rapid success, from the past to recent years, several R genes/QTLs that originated from wild/cultivated Solanum species were mapped on the potato genome and a few genes were cloned using molecular approaches. As a result, molecular markers closely linked to resistance genes or QTLs offer a quicker potato breeding option through marker‐assisted selection (MAS). However, limited progress has been achieved so far through MAS in potato breeding. In near future, new resistance genes/QTLs are expected to be discovered from wild Solanum gene pools and linked molecular markers would be available for MAS. This article presents an update on the development of molecular markers linked to late blight resistance genes or QTLs by utilization of Solanum species for MAS in potato.     

Molecular breeding technologies and strategies for rust resistance in wheat (Triticum aestivum) for sustained food security

Wheat is an important cereal food crop providing key nutrients to humankind. Rusts are the most destructive pathogens of cereal crops, with the exception of rice, across the world and resistant cultivars have been widely employed to reduce the yield losses caused by them. The modern intensive monoculture of cultivars and changing climatic conditions has created congenial conditions for the emergence of new virulent races such as Ug99, which is a great concern for world food security. Conventional breeding efforts have not been effective in quickly developing new varieties with durable and broad‐spectrum resistance against the rapidly evolving rust pathogen races. However, in the last two decades, biotechnological methods such as marker‐assisted selection (MAS) and transgenic technology have provided novel strategies for enhancing resistance levels and durability in crop plants in a short span of time. Nevertheless, broad application of transgenics in agriculture is hindered by biosafety apprehensions. In recent years, improved versions of biotechnological breeding methods such as genomic selection, genome editing technologies, cisgenesis and intragenesis, RNA‐dependent DNA methylation (RdDM), agroinfiltration and reverse breeding are gaining popularity. These technologies provide a tremendous capability to manipulate crop plants more precisely than before and accelerate crop improvement efforts for sustained food production as well as overcoming safety concerns associated with food crops.     

Genetic resources of rice in the Western Himalayan region of India: current status

The Western Himalayan region of India possesses rich genetic diversity of rice (Oryza sativa L.). Rice landraces having withstood the rigors of biotic and abiotic stresses, suit to the local conditions of farms and reflect socio-cultural preferences can still be found in crop fields located distantly in rural and tribal areas. This region is known for growing World fame basmati in the foot hills and many varieties of red rices grown at higher elevations, known for cold tolerance and medicinal properties. Genetic resources of rice were collected for about 8 years (1999–2006) and 1069 germplasm accessions including 154 named landraces were collected. Prominent landraces such as Begumi, Ramjwain, Thapachini, Naurang, Hansraj, Tilakchandan, Lalsati, Jhini, Mushakbudji, Jattoo, Barpasso, Qadirbeigh, Safedbrez, Shahie known for their special quality attributes were collected. The change in land use, cropping patterns and aggressive introduction of modern varieties in the region has resulted in the loss of a large number of landraces especially from irrigated lands. The present paper looks at the status of rice genetic resources, genetic variability, genetic erosion and future strategies to conserve rice germplasm on farm and to maximize its use in rice breeding.     

Factors influencing biomass and carbon storage potential of different land use systems along an elevational gradient in temperate northwestern Himalaya

We observed the influence of five different altitudes and prevailing agro ecosystems on biomass and carbon sequestration potential in Kullu district of Himachal Pradesh, India. The study area had five prevailing land uses viz., agriculture, agro-horticulture, horticulture, silvi-pasture, and forest at four elevations representing about 1 °C temperature change. The results showed that maximum total biomass of 404.35 Mg C ha^?1 was accumulated by forest landuse and followed a decreasing trend in the order as forest > silvi-pasture > agro-horticulture > horticulture > agriculture. Similar trends were also seen with respect to biomass carbon (C) density and C-sequestration potential of different land uses. Biomass and carbon density potential enhanced with the increase in the altitudinal ranges from 1100–1400 to 2000–2300 m a.s.l. But, the rate of C-sequestration potential enhanced from 1100 to 2000 m and declined at 2000–2300 m a.s.l. Maximum carbon density (393.29 Mg C ha^?1) of both plant as well as soil was displayed by the forest-based land use systems situated at an altitudinal gradient of 2000–2300 m a.s.l. The rate of C-sequestration was maximum (2.17 Mg ha^?1) in the agro-horticulture at 2000–2300 m a.s.l. This study brings out the potential of different land use systems influenced by varying factors on their C-sequestration potential in western Himalayan elevation gradient, thereby providing useful information for effective management in a climate change mitigation and carbon budget.     

Molecular detection of important abortion-causing microorganisms in preputial swab of breeding bucks using PCR-based assays

Infectious diseases and aetiological agents related to female reproductive systems were extensively covered compared to its male counterpart. There needs a proper study to bridge this gap, where microflora and infectious agents of both male and female reproductive are mutually intelligible. With this study, we aimed to evaluate the microbial contamination of the preputial cavity and also screened for abortion-causing agents which are zoonotic as well. In goats, such types of abortions are caused by Brucella melitensis, Chlamydophila, Campylobacter and Coxiella etc. One of the major sources of contamination of semen is the preputial cavity, which is exposed to the external environment leading to spread of infection into the female via semen straws or by natural service. In the current study, good quality bucks (n = 32, Barbari = 12, Jamunapari = 10, Jakhrana = 10) which were routinely used for semen collection were screened for their preputial swabs, for the presence of the above pathogens. For detection of Brucella melitensis, OMP31 based TaqMan® probe real-time PCR assay was used, and for Chlamydia, 16srRNA gene based SYBR® green real-time PCR assay was employed for detection of Chlamydophila abortus. While for Campylobacter spp. and Coxiella burnetii, 16srRNA gene based conventional PCR and Trans-PCR were used, respectively. In the current study, of the screened preputial swabs, none of them showed positive for Brucella and Coxiella, but of the screened 32 samples 17 showed positive for Chlamydia (53.13%) and two (6.25%) showed positive for Campylobacter spp. The current study emphasizes on the farms and laboratories which were regularly involved in screening of brucellosis also often overlook the other potential non-brucella pathogens, causing abortions eventually incurring severe economic losses to the goat keepers.     

Effect of 46 years' application of fertilizers,FYM and lime on physical,chemical and biological properties of soil under maize–wheat system in an acid Alfisol of northwest Himalayas

Imbalanced fertilizer use with intensive cropping has threatened the sustainability of agroecosystems, especially on acid soils. An understanding of the long-term effects of fertilizers and amendments on soil health is essential for sustaining high crop yields. The effects of application of fertilizers, and amendments for 46 years on soil properties and maize yield in an acid Alfisol were investigated in this study. Ten fertilizer treatments comprising different amounts of NPK fertilizers, farmyard manure (FYM) and lime, and one control, were replicated three times in a randomized block design. At 0–15 cm soil depth, bulk density was least (1.20 t/m³), porosity (49.8%) and water holding capacity (61.7%) were greatest in 100% NPK + FYM, corresponding to the largest organic carbon content (13.93 g/kg). Microbial biomass C and dehydrogenase activity in 100% NPK + FYM were 42% and 13.7% greater than 100% NPK, respectively. Available nutrients were significantly more with 100% NPK + FYM and 100% NPK + lime than control and other fertilizer treatments. At 15–30 cm depth, the effect of various treatments was comparable to the surface layer. Grain yield declined by 55% and 53% in 100% NPK(-S) and 100% NP, respectively, compared with 100% NPK, whereas 100% N as urea alone eventually led to crop failure. Soil porosity recorded the greatest positive correlation (r = .933**), whereas bulk density recorded a negative significant correlation (r = −.942**) with grain yield. The results suggest that integrated use of FYM/lime with chemical fertilizers is a sustainable practice in terms of crop yield and soil health, whereas continuous application of urea alone is detrimental to the soil health.