A New Micromonospora Strain with Antibiotic Activity Isolated from the Microbiome of a Mid-Atlantic Deep-Sea Sponge

To tackle the growing problem of antibiotic resistance, it is essential to identify new bioactive compounds that are effective against resistant microbes and safe to use. Natural products and their derivatives are, and will continue to be, an important source of these molecules. Sea sponges harbour a diverse microbiome that co-exists with the sponge, and these bacterial communities produce a rich array of bioactive metabolites for protection and resource competition. For these reasons, the sponge microbiota constitutes a potential source of clinically relevant natural products. To date, efforts in bioprospecting for these compounds have focused predominantly on sponge specimens isolated from shallow water, with much still to be learned about samples from the deep sea. Here we report the isolation of a new Micromonospora strain, designated 28ISP2-46^T, recovered from the microbiome of a mid-Atlantic deep-sea sponge. Whole-genome sequencing reveals the capacity of this bacterium to produce a diverse array of natural products, including kosinostatin and isoquinocycline B, which exhibit both antibiotic and antitumour properties. Both compounds were isolated from 28ISP2-46^T fermentation broths and were found to be effective against a plethora of multidrug-resistant clinical isolates. This study suggests that the marine production of isoquinocyclines may be more widespread than previously supposed and demonstrates the value of targeting the deep-sea sponge microbiome as a source of novel microbial life with exploitable biosynthetic potential.     

Soil nitrogen distribution and deposition on shortgrass prairie adjacent to a beef cattle feedyard

Cattle feedyards can impact local environments through emission of ammonia and dust deposited on nearby land. Impacts range from beneficial fertilization of cropland to detrimental effects on sensitive ecosystems. Shortgrass prairie downwind from an adjacent feedyard on the southern High Plains of Texas, USA changed from perennial grasses to annual weeds. It was hypothesized that N enrichment from the feedyard initiated the cascade of negative ecological change. Objectives were to determine the distribution of soil nitrogen and estimate N loading to the pasture. Soil samples were collected from 119 locations across the pasture and soil total N (TN), nitrate-N and ammonium-N (AN) determined in the top 30 cm. Soil TN concentration decreased with distance downwind from the feedyard from 1.6 ± 0.2 g kg⁻¹ at 75 m to 1.2 ± 0.05 g kg⁻¹ at 582 m. Nitrate-N concentration decreased within 200 m of the feedyard and changed little at greater distances. Ammonium-N concentration decreased linearly (P < 0.001) with increasing distance from the feedyard from 7.9 ± 1.7 mg kg⁻¹ within 75 m from the feedyard to 5.8 ± 1.5 mg kg⁻¹ at more than 550 m from the feedyard; however, distance only explained 12% of the variability in AN concentration. Maximum nitrogen loading, from 75 to 106 m from the feedyard, was 49 kg ha⁻¹ year⁻¹ over 34 years and decreased with distance from the feedyard. An estimate of net dry deposition of ammonia indicated that it contributed negligibly to N loading to the pasture. Nitrogen enrichment that potentially shifted vegetation from perennial grasses to annual weeds affected soil N up to 500 m from the feedyard; however, measured organic and inorganic N beyond that returned to typical and expected levels for undisturbed shortgrass prairie.

Development of an in vitro culture system for producing eel larvae from immature ovarian follicles in Japanese eel <Emphasis Type="Italic">Anguilla japonica</Emphasis>

To standardize conditions during the final maturation and ovulation of ovarian follicles from Japanese eel, we have developed a culture system for the production of fertilizable eggs from post-vitellogenic ovarian follicles in vitro. Post-vitellogenic ovarian follicles were incubated in culture medium supplemented with 17α,20β-dihydroxy-4-pregnen-3-one (DHP) with or without bovine serum albumin (BSA) to assess the effects of protein concentration. Eggs that ovulated during incubation were fertilized, and the remaining follicles were incubated in prostaglandin F_2α (PGF_2α) for a further 3 or 6 h before fertilization. Male eels were injected repeatedly with human chorionic gonadotropin. The quality of eggs obtained under the different culture conditions was evaluated after artificial fertilization in terms of hatching success. Hatching rates tended to decrease with increasing concentrations of BSA in the incubation medium in a dose-dependent manner. The addition of PGF_2α drastically increased the number of eggs that ovulated, but the rate of hatching was greatly decreased compared with eggs obtained earlier by DHP incubation alone. The larvae obtained from artificially fertilized eggs produced in vitro survived for 14 days without feeding. We conclude that in vitro culture systems thus have a great potential for the acquisition of good quality eggs under tightly controlled artificial conditions, culminating in the production of eel larvae.     

Response of denitrifying communities to successive soil freeze–thaw cycles

The effect of soil freeze–thaw cycles on the denitrification potential was examined based on the C₂H₂ inhibition method. The gross N₂O production curve of the soil sample (incubation with C₂H₂) showed minor changes between the freeze–thaw treatment and the unfrozen control. However, kinetics analysis revealed that the initial production rate, an indicator of the population density of denitrifying communities, decreased (P = 0.043) and the specific growth rate constant, an indicator of the activity of denitrifying communities, increased (P = 0.039) as a result of the freeze–thaw cycles in five of six soil samples examined. The increase in the specific growth rate constant suggested the stimulation of the activity of denitrifying communities that survived after the freeze–thaw cycles and may explain the minor suppression on the gross N₂O production in spite of decreasing the population density of denitrifying communities that was suggested by the initial production rate. The net N₂O production curve of the soil sample (incubation without C₂H₂) showed a remarkable change in one out of six soil samples, and in that one soil sample, N₂O release to the atmosphere was largely stimulated (7.6 times) by the freeze–thaw cycles. However, the stimulation of the N₂O release by the freeze–thaw cycles was even observed in two other selected soil samples (4.6 and 1.8 times), suggesting that an imbalance in the N₂O-producing and N₂O-reducing activities of denitrifying communities might complementally explain the N₂O release stimulated by the freeze–thaw cycles.     

Study of the live body weight and body characteristics of the African Muscovy duck (<Emphasis Type="Italic">Caraina moschata</Emphasis>)

Three hundred and twenty 1-week old ducklings (160 males and 160 females) were used to evaluate the body weight, body parts and carcass characteristics of the African Muscovy duck. Sexual dimorphism was in favour of the male for all the parameters throughout the experimental period, however the difference was significant (P < 0.05) only after week 2. The 12-week old male weighed 1832.0 ± 180.4 g while the female reached only 68.2% of the male weight. Metatarsus diameter, thoracic perimeter, body length, length of bill, foot and wing in cm were respectively 1.3, 29.5, 57.5, 7.0, 27.1 and 27.8 for the male as compared with 1.2, 25.8, 51.0, 6.3, 23.3 and 26.9 for the female. Body measurements were highly (P < 0.01) correlated with body weight for both sexes, however the highest correlation coefficients were obtained with wing length (0.990 and 0.995) and thoracic perimeter (0.993 and 0.973) for female and male respectively. Live body weight had a linear relationship with both wing length (R² = 0.991 and 0.81) and thoracic perimeter (R² = 0.948 and 0.986) for male and female respectively. The female duck yielded higher percent ready-to-cook carcass (66.3%), breast (13.6%), liver (2.8%), heart (1.5%) and gizzard (3.8%) as compared to the male (65.0%, 12.0%, 2.5%, 1.1% and 3.4% respectively) although the difference was not significant (P > 0.05). The male small intestine (185.1 ± 3.4 cm), colon (14.8 ± 1.0 cm) and caecum (17.9 ± 0.4 cm) were significantly (P < 0.05) longer than that of the female (152.2 ± 1.8, 10.8 ± 0.7 and 14.85 ± 0.6 cm respectively).     

Seroprevalence of brucellosis and its contribution to abortion in cattle,camel, and goat kept under pastoral management in Borana,Ethiopia

The involvement of Brucella infection in causing abortion was investigated in a breeding female subpopulation of 283 cattle, 756 camels, and 757 goats. Serum samples were serially tested using the Rose Bengal test and complement fixation test. The study showed that anti-Brucella antibodies were prevalent in 10.6% (95% confidence interval (CI), 7.4, 14.9), 2.2% (95%CI, 1.4, 3.7), and 1.9% (95%CI, 1.1, 3.2) of cattle, camel, and goats, respectively. Abortion was more commonly reported in camels (23.4%) than cattle (13.8%) and goats (12.4%). The results of this study suggested that Brucella infections contribute significantly to abortion in cattle (odds ratio (OR), = 4.7; 95%CI, 2.0, 10.8) and goats (OR = 6.9; 95%CI, 2.2, 21.7) but not in camels. The number of young animals produced by breeding females seems to be apparently reduced in seropositive groups. Keeping more than two animal species at household level was found to be the risk factor for cattle (OR = 3.1; 95%CI, 1.2, 7.9) and camel (OR = 5.3; 95%CI, 1.2–23.5) seropositivity to Brucella infection when compared to those animals from households that keep only two animal species. This may suggest a possibility of cross species transmission of Brucella infection under such mixed herding. Wet season (OR = 4.8; 95%CI, 1.3, 18.1) was found to be associated with seropositivity in goats, linked to a coincidence of increased deliveries in flocks with possible excretion of Brucella organisms. The study results suggest that Brucella infection is the likely cause of abortion in cattle and goats while other causes largely outweigh brucellosis as a cause of abortion in camels in Borana, hence, contributing to reproductive loss.     

Gross nitrogen mineralisation and fungi-to-bacteria ratios are negatively correlated in boreal forests

In terrestrial ecosystems, gross nitrogen mineralisation is positively correlated to microbial biomass but negatively to soil organic matter C-to-N ratios; the influence of the microbial community structure is less well known. Here, we relate rates of gross N mineralisation to fungi-to-bacteria ratios in three natural forest types of contrasting N availability and in a long-term N-loading experiment in a boreal forest. We report, for the first time, a strong negative correlation between gross N mineralisation and the fungi-to-bacteria ratio ( = 0.91, P = 0.0005, N = 7). There was also a negative correlation between gross N mineralisation and the C-to-N ratio ( = 0.89, P = 0.001, N = 7), but a weaker positive correlation between gross N mineralisation and soil pH ( = 0.64, P = 0.019, N = 7). Our analysis suggests that soil fungi-to-bacteria and C-to-N ratios are interrelated and that they exert strong influences on soil N cycling in boreal forests.