Principal economic effects of cormorant predation on catfish farms

Substantial economic losses of farmed catfish to fish‐eating birds such as the double‐crested cormorant, Phalacrocorax auritus, continue to be reported on U.S. catfish farms. An economic analysis was conducted of the on‐farm effects of both the increased expenditures to scare fish‐eating birds from catfish farms and of the value of the catfish that were consumed by cormorants. A survey was conducted of U.S. catfish farmers in the Delta region of Mississippi and Arkansas, to obtain farm‐level data on expenditures to scare birds. Estimations of the lost revenue from catfish consumed by cormorants were developed from a concurrent study on cormorant distribution, abundance, and diet in the region. The economic effects of bird predation in terms of both fish consumption and management costs were evaluated across three farm sizes and nine catfish production practices. Catfish farmers spent on average $704/ha ± $394/ha to scare birds, making bird‐scaring costs one of the top five costs of raising catfish. The greatest cost components of scaring birds were manpower (39% of all bird‐scaring costs) and the variable and fixed costs of trucks used to scare birds (34% of all bird‐scaring costs). Losses were greater on hybrid than channel catfish fingerling ponds. Industry‐wide, the value of catfish losses averaged $47.2 million (range of $25.8–$65.4 million). Total direct economic effects (including both the increased costs to scare birds and the revenue lost from fish consumed by cormorants despite bird‐scaring attempts) averaged $64.7 million (ranging from $33.5 to $92.6 million). Profitability improved by 4% to 23% across the farm size/production strategies analyzed upon removal of the economic effects from bird predation, with greater effects occurring on smaller‐scale farms. One‐third of the farm size and production scenarios analyzed changed from being unprofitable to showing a profit in the absence of such negative economic effects associated with bird depredation. Overall, the combined effects of increased farm expenditures to scare birds from farms and the value of the catfish lost to predation by cormorants caused substantial negative economic effects on catfish farms.     

Responsiveness of fish mass–abundance relationships and trophic metrics to flood disturbance,stream size,land cover and predator taxa presence in headwater streams

Characterisation of food webs, by summarising energy transfer and trophic relationships, allows more functional measurement of ecosystems and may reveal threats (e.g., land‐cover change) in sensitive environments that are not obvious from conventional biomonitoring. However, typical methods used to achieve this are time‐consuming and expensive. Therefore, we tested the usefulness of fish‐focused food‐web proxies as functional measures, specifically mass–abundance relationships of fish assemblages and stable isotope (SI)‐derived metrics in headwater stream reaches. These metrics have been trialled before for similar use in other settings, but have yielded varying results, and have not been employed in tandem in temperate freshwaters. Sampling reaches (N = 46) were spread across a variety of streams, and the effects of habitat predictors at multiple scales on metrics were assessed using model selection. We found that habitat size positively correlated with food‐chain lengths in streams, possibly because of increased abundance of fish at multiple trophic levels in habitats with more space. Additionally, flood disturbance was negatively associated with fish mass–abundance and carbon range, likely due to the harshness of flood‐prone streams. Riparian land‐cover variables were correlated with multiple metrics, indicating the importance of terrestrial–aquatic linkages. Additionally, variations in all metrics were influenced by the presence of native, predatory longfin eels. Overall, we conclude that mass–abundance relationships and SI‐derived metrics are sensitive to drivers of trophic organisation and likely reflect processes occurring at multiple spatial scales in freshwaters. Thus, these metrics could be an insightful monitoring tool for managers because they reflect functional measures of aquatic ecosystems.     

The impacts of traditional and novel herbicide application methods on target plants,non‐target plants and production in intensive grasslands

Herbicides contribute significantly to agricultural intensification, but some negatively impact non‐target organisms. Much research has focused on reducing herbicide use through technological improvements in application and herbicide selectivity, but impacts on non‐target organisms are less well understood. Using experimental plots in silage systems, we investigated impacts of herbicides (both narrow spectrum targeting broad‐leaved plants and selective and non‐selective broad spectrum) applied using traditional techniques (blanket‐ and manual spot‐spraying) and a novel application technique (automated spot‐spraying) on non‐target plant richness/diversity, target weed presence (Rumex species) and production (DM yield). All herbicides reduced non‐target plant richness/diversity and sometimes target weeds (when applied using traditional methods). Automated spot‐spraying had fewer negative effects on non‐target organisms, but did not reduce target weeds. No differences in production levels among treatments were observed. The automated spot‐spraying technique requires further research and development. Our results indicate that 20–30% weed cover does not significantly alter production and so, as herbicides are expensive, their effects on non‐target organisms and the environment can be more significant than their benefits to production. We advocate more research into the relationships between weed infestation and production in grasslands, so that the propensity to overuse herbicides is reduced.     

Detection and quantification of Fusarium oxysporum f. sp. cucumerinum in environmental samples using a specific quantitative PCR assay

The rapid and reliable identification and quantification of pathogens is essential for the management of economically important plant diseases. Fusarium oxysporum f. sp. cucumerinum is the soil borne fungus responsible for Fusarium vascular wilt of cucumber. In this study, we report the development of a specific and reliable real-time quantitative PCR assay and the development of an ultra-sensitive diagnostic pseudo-nested PCR assay. The capacity of the PCR assays to accurately identify and quantify Fusarium oxysporum f. sp. cucumerinum was experimentally tested by the development of standard curves from serial dilutions of copy numbers in a range of complex environmental DNA samples. The amplification efficiency, sensitivity and reproducibility of the qPCR assays were not significantly affected by the presence of any of the non-target background DNA tested. In quantitative real-time PCR, as few as 100 copies could be reliably quantified, and in simple and pseudo-nested PCR as little as 10 pg and 10 fg, respectively, could be detected. This rapid and sensitive qPCR method can be used to facilitate investigations into plant–pathogen interactions, epidemiology, and disease management practices.     

Amphibian-killing fungus loses genetic diversity as it spreads across the New World

Emergent infectious diseases are a severe threat to global biodiversity, thus conservation biologists need to understand the emergence, spread, and evolution of pathogens to identify factors driving disease outbreaks. Amphibian chytridiomycosis is a recently emerged amphibian disease caused by the fungus Batrachochytrium dendrobatidis (Bd) that has led to species extinctions and declines worldwide. The spatio-temporal dynamics of pathogen occurrence and disease outbreaks, and comparative genomic analyses of global Bd strains, support the spreading pathogen hypothesis (SPH) with pandemics occurring after introduction of Bd into naïve host populations. Here we used population genetics of the amphibian-killing fungus to test for genetic consequences of pathogen spread. Our population genetic analyses are consistent with the spread of Bd from North to Central America, based on low genetic diversity, reduction in heterozygosity, and increased allele fixation in Bd from recently infected populations. Our findings confirm the spread of Bd in the New World, and indicate that future conservation efforts should focus on: (i) functional consequences (such as changes in pathogenicity) of these genetic changes, and (ii) public education and restrictions on wildlife trade to help slow spread of the pathogen at the invasion front.     

Is Catchment Imperviousness a Keystone Factor Degrading Urban Waterways? A Case Study from a Partly Urbanised Catchment (Georges River, South-Eastern Australia)

The extent of catchment impervious surface is recognised to be an important factor associated with the condition of urban freshwater streams. We tested the hypothesis that the degree of catchment imperviousness predicted the relative ecological condition of freshwater reaches within the network of streams and rivers in the partly urbanised Georges River catchment in temperate south-eastern Australia. The 2-year study involved two spring and two autumn assessments of water quality (chemical and physical) and ecological condition, using benthic macroinvertebrates, riparian vegetation and calculation of catchment imperviousness. The study revealed that highly urbanised streams had strongly degraded water quality and macroinvertebrate communities, compared to clean non-urban reference streams. We found three clear groups of sites with varying degrees of ecological condition, being categorised according to the level of catchment effective imperviousness (low <5.0?%, moderate = 5.0?C18.0?% and high >18.0?%). Water pollution also varied according to these categories. A combination of two water chemistry attributes (total nitrogen and calcium), along with catchment imperviousness and riparian vegetation condition, were identified as being the factors most strongly associated with variation of macroinvertebrate communities. Based on our results, we recommend that protection of the ecological condition of streams should focus on not only water quality but also include catchment imperviousness and riparian vegetation condition.     

Responses of Spring Wheat Cultivars to Nutrient Solutions Containing Additional Potassium Chloride

Hard red spring wheat (Triticum aestivum L.) cultivars each respond differently to chloride fertilizer under field conditions. The objective of this research was to investigate cultivar-specific chloride responses under controlled environments. Plants were grown in sand culture ± additional chloride (±20 mM KCl) nutrient solutions for four weeks. Of cultivars given additional chloride, ‘Butte,’ ‘Sharp,’ ‘Ingot,’ ‘Oxen,’ ‘Forge,’ and ‘Ember’ had significantly greater shoot chloride uptake than ‘Marshall.’ In soil-grown plants given 0, 20, 80, or 160 mM KCl from planting to heading, seed number remained constant, while individual seed weight and total yield decreased at higher KCl treatment levels in ‘Butte.’ Individual seed weight remained constant, while seed number and total yield increased in ‘Marshall.’ It was concluded that chloride fertilizer response in ‘Marshall’ under field conditions may have been mediated by reduced chloride uptake, which in turn resulted in decreased chloride toxicity at higher-chloride soil fertility levels.     

NITROGEN FERTILIZER MANAGEMENT FOR IMPROVED GRAIN QUALITY AND YIELD IN WINTER WHEAT IN OKLAHOMA

From 2002 to date, a long-term field experiment has been conducted at Lake Carl Blackwell, Oklahoma, with different rates and times of nitrogen (N) fertilizer application to determine their effect on grain yield, protein and N uptake of winter wheat. Trend analysis for N rates (0, 50, 100, 150 and 200 kg N ha^?1) and orthogonal contrasts for different application times (pre-plant, top-dressed in February and March) were performed. With increasing fertilizer N, wheat grain yield and protein content increased from 2110 kg ha^?1 to 6783 kg ha^?1 and from 8.96 to 17.19%, respectively. For grain yield, protein, and N use efficiency, split applications of N fertilizer were much more efficient than applying all N pre-plant. Large differences in grain yields were noted for different years at the same N rate (range exceeded 5.0 Mg ha^?1) and that illustrated the need for making within-year-specific N rate recommendations.