Nonrandom distribution of chum salmon stocks in the Bering Sea and the North Pacific Ocean estimated using mitochondrial DNA microarray

More than 1,000 age-identified chum salmon Oncorhynchus keta collected at 23 stations in the Bering Sea and the North Pacific Ocean in June to July 2003 were used to estimate their origin of stocks using a DNA microarray developed for analyzing the mitochondrial (mt)DNA haplotypes. The observed haplotype distribution was nearly the same as that reported previously for fish collected in September 2002 and 2003 in the present surveyed areas. A conditional maximum-likelihood method for estimation of stock compositions indicated that the Japanese stocks mainly distributed in north central Bering Sea, whereas the Russian stocks were mainly in western Bering Sea. The North American stocks were abundant in eastern Bering Sea and around the Aleutian Islands. Such an area-specific stock composition was not significantly different between mature and immature fish. Thus, the combined results of 2 years suggest that the distribution of chum salmon is nonrandom in the surveyed areas in summer and autumn, and that fish of the same origin migrate together to the same area irrespective of age.     

Elemental analysis of otoliths of Japanese anchovy: trial to discriminate between Seto Inland Sea and Pacific stock

The ability to discriminate local stocks of Japanese anchovy Engraulis japonicus was assessed based on data from four elements (K, Na, P, and Sr) using an electron probe micro analyzer (EPMA) and data from three elements (Ba, Mn, and Sr) using inductively coupled plasma mass spectrometry (ICP-MS) from the otoliths of 40 anchovy (23.6–47.0 mm body length). Anchovy were caught at three sites (Aki-nada, Hiuchi-nada, and Osaka Bay) in the Seto Inland Sea, and one site (Kuroshio extension) in the Pacific Ocean in 2002. In order to discriminate different spawning grounds, EPMA data from the core portion (from core to 30 μm in the core-posterior axis) were used. Results showed that it was difficult to discriminate between the Seto Inland Sea and the Pacific anchovy by EPMA data. Conversely, it was possible to discriminate between the Seto Inland Sea and the Pacific anchovy by ICP-MS data from bulk otoliths. Our results showed that Mn contents of otoliths using ICP-MS discriminate between spawning grounds most, and Ba and Sr discriminate less. The difference in elemental compositions in anchovy otoliths between the Seto Inland Sea and the Pacific Ocean might be reflected by cumulative experienced elemental composition of ambient sea water during life history between the Seto Inland Sea and the Pacific anchovy.     

Guanine-cytosine contents of the host and symbiont cDNA in a symbiotic coral

ABSTRACT:   Hermatypic (reef-building) corals harbor dinoflagellate endo-symbionts Symbiodinium spp. In studying gene expression in such symbiotic corals, problems arise regarding how to distinguish the coral and symbiont mRNA, and how to estimate their fractions in the mRNA population of the holobiont (symbiotic complex of the coral and Symbiodinium cells). In this study, these issues were addressed using juveniles of hermatypic coral Acropora tenuis in symbiosis with Symbiodinium cells of strain PL-TS-1. First, the guanine-cytosine (GC) contents were determined in expressed sequence tags (EST) from PL-TS-1 cells cultured in vitro and symbiont-free larvae of A. tenuis , and their average GC contents were found to be significantly different. The average GC content of the EST from the holobiont was much closer to that of A. tenuis larvae, suggesting that the majority (>90%) of mRNA isolated from the holobiont originated in the host. In protein-coding sequences, little overlap was observed between the GC-content distributions of PL-TS-1 cells and A. tenuis larvae. All of the coding sequences ( n  = 59) found in the A. tenuis EST had GC contents below 0.5, whereas the GC content exceeded 0.5 in the majority (43/44) of coding sequences from the nuclear genome of PL-TS-1 cells.     

Bioaccumulation of cadmium and its biochemical effect on selected tissues of the catfish (<Emphasis Type="Italic">Clarias gariepinus</Emphasis>)

The present study examines the pattern of accumulation of cadmium (Cd) and its biochemical effects on selected tissues of a variety of African catfish (Clarias gariepinus), after exposure to various doses of Cd. The results obtained indicate that at the end of 21 days of exposure, the total tissue organ cadmium concentration followed the pattern kidney > gill > liver > muscle for each of the exposure concentrations. The levels of Cd in these organs were higher than those in ambient water. Moreover, while the rate of uptake of Cd increased with time in the kidney, liver and muscle, it decreased in the gill. Superoxide dismutase (SOD) was significantly elevated only in the kidney of catfish treated with 0.2 and 0.4 ppm of Cd for 7 days compared with the control. Conversely, gill SOD was significantly decreased in the same concentrations of Cd-treated catfish relative to the control. Statistically similar levels of SOD were observed in the liver, brain and muscle with all the treatments after the same duration of treatment. In the fish exposed for 21 days, SOD activity was significantly decreased in the kidney with a corresponding increase in lipid peroxidation (LPO), but it manifested only with the 0.2- and 0.4-ppm Cd treatment relative to the control. In the liver, however, Cd exposure significantly increased SOD in the 0.2- and 0.4-ppm treatments of the same duration. In conclusion, the present study indicates that the accumulation of Cd and its effect on SOD and LPO in C. gariepinus is dependent on concentration, tissue and time     

Breaking new ground in food regime theory: corporate environmentalism,ecological feedbacks and the ‘food from somewhere’ regime?

Early food regimes literature tended to concentrate on the global scale analysis of implicitly negative trends in global food relations. In recent years, early food regimes authors like Harriet Friedmann and Philip McMichael have begun to consider the sites of resistance, difference and opportunity that have been emerging around, and into contestation with, new food regime relations. This paper examines the emerging global-scale governance mechanism of environmental food auditing—particularly those being promoted by supermarkets and other large food retailers—as an important new dynamic in our understanding of the politics and potentials of food regimes. Commencing with an examination of Friedmann’s corporate environmental food regime, two key dynamics are identified as being pivotal in the rise and decline of global-scale regimes: securing social legitimacy for food relations and the importance of ecological dynamics in global food relations. By extending McMichael’s notion of ‘Food from Nowhere’ versus ‘Food from Somewhere’, the paper interrogates the emergence of a cluster of relations that comprise ‘Food from Somewhere’ and examines whether this cluster of relations has the potential to change some of the constituent ecological dynamics of food regimes. These ecological dynamics have historically been problematic, amply demonstrating Marx’s metabolic rift as the early food regimes solidified relationships between ‘ecologies at a distance’. By using socio-ecological resilience theory, ‘Food from Somewhere’ is characterized as having denser ecological feedbacks and a more complex information flow in comparison to the invisibility and distanciation characterizing earlier regimes as well as contemporary ‘Food from Nowhere’. The conclusion of this article is that while ‘Food from Somewhere’ does provide one site of opportunity for changing some key food relations and ecologies, the social legitimacy of this new form of food relations does rely on the ongoing existence of the opposite, more regressive, pole of world food relations. The key question for resolving this tension appears to be whether new food relations can open up spaces for future, more ecologically connected, global-scale food relations.     

Gender discrimination and its impact on income,productivity, and technical efficiency: evidence from Benin

This paper examines the occurrence and impact of gender discrimination in access to production resources on the income, productivity, and technical efficiency of farmers. Through an empirical investigation of farmers from Koussin-Lélé, a semi-collective irrigated rice scheme in central Benin, we find that female rice farmers are particularly discriminated against with regard to scheme membership and access to land and equipment, resulting in significant negative impacts on their productivity and income. Although women have lower productivity, they are as technically efficient as men. The findings suggest that there is considerable scope for improving the productivity of women through increasing their access to production resources.     

Identifying and measuring agrarian sentiment in regional Australia

In common with much of the Western world, agrarianism—valuing farmers and agricultural activity as intrinsically worthwhile, noble, and contributing to the strength of the national character—runs through Australian culture and politics. Agrarian sentiments and attitudes have been identified through empirical research and by inference from analysis of political debate, policy content, and studies of media and popular culture. Empirical studies have, however, been largely confined to the US, with little in the way of recent re-evaluations of, or developments from, early work. This paper reports on research that seeks quantitative empirical evidence for the existence of agrarianism in the Australian community and seeks to identify its core characteristics. Using a purpose-designed sub-set of items within a large, omnibus-style survey of regional and rural Australia, we demonstrate that agrarianism exists as a scientifically quantifiable concept identifiable through responses to four key propositions: that Australians should support policies aimed at improving the position of the agricultural industries; that working in agriculture and associated industries brings out the best in people; that agricultural producers make a major contribution to environmental protection and biodiversity conservation; and that the development of agriculture in Australia contributed to the development of the national character. We found very little variation in the degree to which different demographic groupings agree with agrarianism. Older people, farmers, and non-Indigenous Australian-born respondents were among those who were statistically significantly more likely to agree with the defining propositions of agrarianism, but their scores were only very slightly higher than those of other sub-populations in the sample.     

Incorporating parameter uncertainty into prediction intervals for spatial data modeled via a parametric variogram

In spatial predictions, researchers usually treat the estimated theoretical variogram parameters as known without error and ignore the variability of the parameter estimators. Although the prediction is still unbiased, the prediction error is usually underestimated. Therefore, the coverage probability of the prediction interval usually is lower than the nominal probability. A simulation study is performed to show how the coverage probability for prediction relates to the true range and sill of an exponential variogram. This article proposes two parametric bootstrap methods to incorporate the variability of the corresponding parameter estimators. A simulation study is performed to evaluate the coverage probability of these proposed methods. Finally, we apply the parametric bootstrap methods to a real dataset and compare the results with those from naive (i.e., treating estimated parameters as known) and Bayesian methods.     

Enhancing the parasitism of insect herbivores through diversification of habitat in Philippine rice fields

The diversification of farming landscapes is proposed as a method to increase farm productivity while at the same time enhancing pest regulation services provided by the natural enemies of insect herbivores. In this study, areas of diversified and conventional rice fields (with 2–14 fields per area?=?0.42–1.31 ha) were established at three sites in the Philippines. The diversified areas had a series (>?40 per hectare) of small (<?2 m²) vegetable patches interspersed along rice bunds (levees). The abundance of planthopper and lepidopteran pests in these areas was monitored during two consecutive cropping seasons using sweep nets with rice yield and damage recorded at the end of each season. Mortality of brown planthopper (Nilaparvata lugens) and yellow stemborer (Scirpophaga incertulas) eggs was monitored through field exposures of infested rice plants. There were no differences in rice yields between the conventional and diversified areas; however, a range of vegetables were produced as a supplementary product from the diversified rice areas. Diversification had no effect on planthopper or leaffolder (Cnaphalocrocis medinalis) abundance at the sites. Adult stemborers (Scirpophaga incertulas) were more abundant in the diversified areas; however, stemborer damage was similar between area treatments in both years. Vegetable patches did not increase parasitism of planthopper eggs; however, egg parasitism was highest close to the vegetable patches, suggesting that egg parasitoids interacted with the patches. Mortality of stemborer eggs was higher in the diversified areas than in the conventional areas. Parasitism due to Trichogramma japonicum and other egg parasitoids was also higher in the diversified areas. These results indicate the potential for vegetable patches to enhance the biological control services provided by egg parasitoids in rice fields; however, the study also indicates a need to carefully select vegetable crops that avoid any potential benefits for rice pests. We discuss the need for further research into diversified farms as a means of achieving sustainable rice production in Asia.