Quantifying diversity losses due to selection for scrapie resistance in three endangered Spanish sheep breeds using microsatellite information

The effect of selection for scrapie resistance on genetic variability in three endangered Spanish sheep breeds (Colmenareña, Mallorquina and Rubia de El Molar) was studied using two different criteria for quantifying contributions to genetic variability: (a) molecular coancestry or genetic identity; and (b) average number of alleles per locus or allelic richness. A total of 236 (81 Colmenareña, 76 Mallorquina and 79 Rubia de El Molar) individuals were genotyped for the PrP gene and for 22 microsatellite markers. The analyses assumed a selective policy aimed at the elimination of the VRQ allele and the reduction of the frequency of the ARQ/ARQ genotype. These goals are approached by rejecting for breeding those individuals with the highest susceptibility for scrapie (risk groups R4 and R5) in a genetic scenario with no previous selection programmes considering the PrP gene polymorphism carried out. When all the individuals classified into risk groups R4 and R5 were removed from the dataset, the total molecular coancestry slightly increased in the Colmenareña breed illustrating that the carriers of undesirable PrP genotypes are not essential to maintain its overall gene diversity. When the allelic richness was considered, the removal of the R4 and R5 individuals gave high losses in the Rubia de El Molar breed. The analyses carried out considering the sex of the individuals informed that most increases in genetic identity in the Colmenareña breed resulted from the removal of the R4 and R5 males while in the Mallorquina breed resulted from the removal of the undesirable females. Losses of diversity in the Rubia de El Molar breed were basically independent of the sex of the individuals due to the balanced contributions to diversity of both sexes. As a general recommendation, not all the individuals of undesirable risk groups should be rejected for reproduction at the same time to avoid irretrievable loses of genetic diversity but according to the sex of the individuals.     

Relationship Among Antimutagenic, Antioxidant and Enzymatic Activities of Methanolic Extract from Common Beans (Phaseolus vulgaris L)

Common beans are rich in phenolic compounds, which can provide health benefits to the consumer. The objective of this work was to study the relationship among antimutagenicity, antioxidant and enzymatic activities of methanolic extract and trolox by principal components multivariate analysis. Antimutagenicity of phenolic compounds present in methanolic extract from the seed coat of common beans (P. vulgaris, Flor de Mayo Bajío cultivar) and trolox against AFB₁ mutagenicity were evaluated in the Salmonella typhimurium microsuspension assay. Antioxidant capacity of methanolic extract and trolox were evaluated using β-carotene and 1,1-diphenyl-2-picryhydrazyl (DPPH) in vitro model assays. Cythrome P450 activity was measured by fluorometric assay. For phenolic extract, trolox and phenolic extract + trolox, the inhibition on AFB₁ mutagenicity in tester strain TA100 was 47, 59 and 69%, respectively. While in TA98 was 39, 48 and 68%. The inhibition of phenolic compounds, trolox and phenolic compounds + trolox on cytochrome P450 (CYP450) activity was 48, 59 and 88%, respectively. Correlation analysis showed that phenolic extract and trolox have high antimutagenic and antioxidant activity and also inhibited enzymatic activity. The results suggest that the primary mechanism of action of phenolic compounds in beans against AFB₁ mutagenicity may be extra-cellular in the microsuspension assay.     

In silico and gene expression analysis of the acute inflammatory response of gilthead seabream (Sparus aurata) after subcutaneous administration of carrageenin

Fish Physiology and Biochemistry - Inflammation is one of the main causes of loss of homeostasis at both the systemic and molecular levels. The aim of this study was to investigate in silico the...     

Determinants for successful reforestation of abandoned pastures in the Andes: Soil conditions and vegetation cover

The Andes of Ecuador are known for their outstanding biodiversity but also as the region with the highest deforestation rate in South America. This process is accompanied by accelerating degradation and loss of environmental services. Despite an extraordinary richness in native tree diversity, more than 90% of all forest plantations established in Ecuador consist of exotic species, primarily Eucalyptus spp. and Pinus spp. This is mainly due to the lack of information about the autecological and synecological requirements of the native species.     

How much do Irish Private Forest Owners Know about Forestry?

Since 1980, over 20,000 Irish landowners have afforested land, for the first time, as part of an afforestation programme subsidised by the Government and the EU. A survey of 99 private forest owners was conducted to determine their knowledge of broad aspects of forest management. Key questions were scored so as to test whether respondents had passed or failed a forestry knowledge test. Over two-thirds of private forest owners passed the test. Success in this test was shown to be related to whether respondents had (a) attended extension field days; (b) been active in forest operations in the early stages of the forest cycle and (c) been members of farming and/or forestry groups. Younger respondents (i.e., ≤50 years) were more likely to pass the knowledge test than older respondents.     

Incorporating Sectoral Structure into Shift–Share Analysis

The objective of this article is to present a new way to incorporate the sectoral dimension within the components of regional growth provided by the traditional shift–share analysis. The new methodology elaborates the way that the dynamics of a specific sector in a region are influenced by the performance of other sectors, the latter decomposed between national, structural, and differential effects. To illustrate this extension of the shift–share method, an application is provided using data for the Spanish region of Extremadura for the period 1990–2004. The results highlight how these new components can shed new insights into the analysis of sectoral and regional economic growth processes.     

Antihyperlipidemic Effect of Methanolic Extract from Opuntia joconostle Seeds in Mice Fed a Hypercholesterolemic Diet

The purpose of this study was to evaluate the hypolipidemic effect of a methanolic extract from Opuntia joconostle seeds fed to mice in a hypercholesterolemic diet. Acute toxicity of the methanolic extract was investigated by an established method. Phenolic composition and antioxidant activity were determined by high-performance liquid chromatography and DPPH, respectively. The total phenolic content of Opuntia joconostle seeds was 47.85?±?1.29 mg gallic acid equivalents/g dry weight. The main phenolic compounds were identified as quercetin, rutin, and cafeic acid. Percent inhibition of DPPH⁺ was 49.76?±?0.49 %. The oral LD₅₀ for the methanolic extract from the Opuntia joconostle seeds was >5,000 mg/kg BW. Mice fed a hypercholesterolemic diet for six days exhibited significantly (P?≤?0.001) higher plasma lipid levels than mice fed a normal diet. Remarkably, supplementation with methanolic extract from Opuntia joconostle at doses of 1, 2, and 5 g/kg body weight significantly (P?≤?0.001) prevented the increase in total cholesterol, low-density lipoprotein cholesterol, triglycerides level, and atherogenic index. Similar concentrations of the HDL cholesterol were observed in both treated and control groups. A significant dose-dependent reduction in lipid levels was noted for treated groups compared to the hypercholesterolemic group. We attribute this result to the seeds’ phenolic composition. This methanolic extract has potential to be included in short-term hypercholesterolemia treatment regimens as it exhibits hypolipidemic activity with no apparent toxic manifestations.     

Effects of different bronopol treatments on final survival rates in the artificial incubation of crayfish eggs (Pacifastacus leniusculus,Astacidae)

Two experiments were conducted on the effects of bronopol in the artificial incubation of crayfish eggs (Pacifastacus leniusculus) with the aim to search an alternative to formaldehyde. In the first experiment, 50, 250, 500 and 1000 ppm bronopol and 3000 ppm formaldehyde (control) in periodical administrations were tested on a density of 6.6 eggs cm^?2. After 44 days of incubation, the highest survival was obtained with 1000 ppm bronopol (81.9% to stage 2 juvenile, with no significant difference from formaldehyde), whereas lower bronopol concentrations resulted in significantly lower survival. In the second experiment, 1000, 3000 and 5000 ppm bronopol and 3000 ppm formaldehyde (control) administered for 15 min every second day were tested on eggs at a density of 20 eggs cm^?2. After 78 days of incubation, bronopol at 3000 ppm allowed for a stage 2 juvenile survival rate of 65.0% (with no significant difference from formaldehyde), whereas significantly lower survival was obtained with 1000 ppm or 5000 ppm. This study shows that bronopol may constitute an alternative to formaldehyde in the artificial incubation of crayfish eggs. A concentration of 3000 ppm administered for 15 min every second day may be adequate even on long incubations at high densities (at least 20 eggs cm^?2, one complete layer).     

Model‐based assessment of local‐scale fish larval connectivity in a network of marine protected areas

We assessed by numerical modeling the coastal fish larval dispersion along the southern coast of Mallorca (Balearic Islands, NW Mediterranean) with the objective of determining the factors that contribute to successful recruitment. We assumed that fish larvae dispersal is mainly regulated by physical transport. Currents are mainly wind driven in this area; therefore, changes in wind forcing have a first‐order impact on larval transport. The synoptic wind patterns were systematically analyzed based on self‐organizing map analysis. The wind fields were clustered using a neural network pattern recognition approach into two modes, producing opposite along‐shelf flow. The seasonal changes between spring and summer in the dominance of either mode modulate the along‐shelf circulation, producing flow shifts under some circumstances. This variability in the wind regime was consistent throughout the 10 years analyzed (2000–2009). Using the Princeton Ocean Model (POM) and a particle‐tracking algorithm, we analyzed the effect of wind‐forced currents in the connectivity among near‐shore habitats. We show that, at the spatial scale considered, the coastal morphology and stochastic wind forcing favor local recruitment (mean of 30% self‐recruitment). Maximum transport distances of 20–30 km were typically associated with particles left to drift for 21 days. The implications for the performance of the four marine protected areas near SW Mallorca Island are discussed. Our results suggest that, although wind episodes determine the fate of short‐time spawning events, on a seasonal basis, regular larval supply to coastal zones is ensured by wind stochasticity.     

Does otolith macrostructure record environmental or biological events? The case of black hake (Merluccius polli and Merluccius senegalensis)

Fish age determination using otoliths requires a prior understanding of growth mark deposition patterns (translucent rings, TR) as well as their connection with internal or external events experienced by the fish. This study analysed the macrostructural seasonal ring deposition pattern observed in transversal sections of black hake otoliths. A total of 793 black hake otoliths were collected in autumn and spring 2007 from research and commercial surveys carried out in continental and shelf waters off Mauritania. Most of the Merluccius polli otoliths presented narrow and wide translucent rings (NTR and WTR, respectively) regardless of fish size, whereas Merluccius senegalensis otoliths only showed NTR. This seemed to be a sign of ontogenetic discrepancy between the two black hake species, whose otoliths confirmed the existence of significant differences in their growth patterns.The frequency distributions of the number of TR counted along the ventral radius (VR) of the otolith from the nucleus (birth date) and from the ventral edge (death date) were analysed to ascertain whether a specific endogenous event (Hypothesis A) or a precise environmental event (Hypothesis B) could restrain growth leading to the formation of TR. The general TR frequency distribution pattern was somewhat similar for both hake species, which showed marked TR at comparable distances. Within each species, TR frequency distributions of their distances from the nucleus along the otolith VR were quite similar between sexes, seasons, and fish sizes. Our results support the idea of a coincident biological event, such as first maturity, slowing down the growth process and thus provoking the formation of TR in otoliths of both species.This study also experience difficulty using the complex and highly variable macrostructural pattern of black hake otoliths to establish age interpretation criteria for these two species.