Diversity of Paenibacillus durus strains isolated from soil and different plant rhizospheres evaluated by ARDRA and gyrB-RFLP analysis

Strains belonging to Paenibacillus durus isolated from the rhizosphere of various grasses and from bulk soil were previously divided into five phenotypic groups (A1–A5) based on the fermentation pattern of six carbohydrates (A1: sorbitol (+), A2: dulcitol and tagatose (+), A3: starch and glycogen (+), A4: starch, glycogen and d-arabitol (+) and A5: negative for these carbohydrates). This study aimed to assess whether plant types select for specific P. durus phenotypic groups. For that purpose, polymerase chain reaction-restriction fragment length polymorphism analysis of part of genes encoding 16S rRNA (ARDRA) and DNA gyrase subunit B (gyrB-RFLP) were used to produce genetic fingerprints. ARDRA and gyrB-RFLP data were clustered together to generate a dendrogram and two main clusters were observed. Cluster I showed a predominance of strains isolated from wheat, maize and sugarcane rhizospheres. Strains isolated from maize were distributed among the five patterns of carbohydrate metabolism, while strains isolated from sugarcane showed to be predominantly able to metabolize starch and glycogen. Neither sorbitol- nor arabitol-metabolizing strains were found in cluster II, which consisted of strains isolated from soil and from all plant species used. Our results suggest that the plants influenced the diversity of P. durus in their rhizospheres.     

Determination of Organic Mercury in Biota, Plants and Contaminated Sediments Using a Thermal Atomic Absorption Spectrometry Technique

A simple, rapid procedure for the determination of organic mercury in sediments, plants and fish tissues has been developed and validated. Extraction and separation of organic mercury compounds from the sample matrix was achieved by an established procedure based on an acid leaching of the sample (H₂SO₄/KBr/CuSO₄), followed by extraction of the organic mercury halide with toluene and back-extraction with an aqueous solution of thiosulphate. Detection and quantification of mercury, in the liquid extracts, was made by atomic absorption spectrometry (AAS), following thermal decomposition of the sample. The method was evaluated using Certified Reference Material (CRM) BCR 463 (tuna fish), BCR 580 (estuarine sediment), IAEA-140TM (sea plant homogenate) and NRCC TORT-2 (lobster hepathopancreas). The recovery factors for organic mercury in all tested CRM were between 81–107%. The precision of the method has relative standard deviations of less than 10% for sediments and fish tissues and of less than 16% for plant material. The method was successfully applied to natural samples of sediments, plants, macroalgae and fish tissues collected from an estuarine ecosystem and could, therefore, be used for routine analyses.     

Yield and nitrogen use efficiency of bell pepper grown in SLAB fertigated with different nitrogen rates

Abstract

Adequate plant nutrition is important to reduce costs and increase the crop yield. This study tried to verify the influence of Nitrogen (N) on plant biomass production and the yield of bell pepper grown in SLAB; quantify the N use efficiency (NUE), and to quantify the residual N concentration in the substrate after the end of the crop cycle. The experiment was carried out in a protected environment. Pepper seedlings were transplanted to SLAB bags containing 40?dm³ of substrate. The treatments consisted of six N rates (0, 1.5, 3.0, 4.5, 6.0, and 7.5?g plant^?1) split into 10 fortnightly applications, in a randomized block design with four replications. The fruit yield was evaluated throughout the experiment and after the final harvest, the dry mass of leaves, stem, and root of the plant, the N content and accumulated, the residual nitrate and ammonium in the substrate, and the NUE were evaluated. The rate of 5.51?g plant^?1 of N, corresponding to 355.5?kg ha^?1, provided the maximum yield of commercial fruits of 1.57?kg plant^?1 or 101.2 t ha^?1. With increasing N rate, the residual nitrate concentration in the substrate increased and the NUE decreased.     

The agronomic benefit of phosphate rock application with elemental sulfur depends on the reactivity and fertilizer placement

Abstract

A possible way to improve phosphate rock (PR) agronomic performance is through the addition of elemental sulfur (S⁰). We used ³²P isotope dilution method to assess the P taken up by crops treated with PR. Two experiments, one with common bean and other with upland rice, were carried out, to evaluate the effect of S⁰ on the agronomic performance of two contrasting PR, applied in different methods. Gafsa (GPR) and Patos de Minas (PPR) were used as the high and low reactivity PR, respectively. The experiments were arranged in completely randomized design on factorial structure 2?×?2 × 2?+?2; which means 2 PR (GPR and PPR) versus 2?S⁰ condition (with or without-S⁰) versus 2 application methods (band and broadcast) plus 2 additional treatments (control and triple superphosphate). In band application the S⁰ increased the amount of P uptake by plants from fertilizer of GPR from 2.57 to 9.86?mg pot^?1 for common bean and of 2.26 to 7.05?mg pot^?1 to rice. Regardless the management adopted, less than 2% of P applied as PPR has been taken up by crops. The addition of S⁰ as a strategy to increase the agronomic performance of PR is PR characteristics dependent and fertilizers placement.     

Short-term spatiotemporal variation of soil CO2 emission,temperature, moisture and aeration in sugarcane field reform areas under the influence of precipitation events

Soil CO₂ emission (FCO₂) in agricultural areas results from the interaction of different factors such as climate and soil conditions. Our objective was to investigate the spatiotemporal variation of FCO₂, temperature (T_soil), moisture (M_soil) and air-filled pore space (AFPS), as well as their interactions, during the sugarcane field reform. The study was conducted on a 90 × 90 m sampling grid with 100 points at 10 m spacings. Ten assessments of FCO₂, T_soil and M_soil were carried out at each point over a 28-day period. The greatest mean values of FCO₂ (0.74 g m⁻² hr⁻¹) and M_soil (31.7%) were obtained on Julian day 276, 2013, being associated with precipitation events at the study site. Also, the smallest values of AFPS (19.17%) and T_soil (20.90°C) were observed on the same day. The spatial variability of FCO₂, T_soil, M_soil and AFPS was best described by an adjusted spherical model, although an exponential model better fitted some results. The spatial pattern of all soil attributes showed little temporal persistency, indicating a high complexity for FCO₂ during precipitation. Correlation maps assisted in identifying regions where M_soil and AFPS better controlled the emission process and where T_soil was important. A major challenge for world agriculture is to increase the efficiency of conventional soil management practices. We highlight the importance of the spatial pattern of soil properties that directly influence the CO₂ emission dynamics. Future mitigation actions should involve less intense tillage and ensure homogeneous applications of soil inputs, thereby reducing production costs and the contribution of these activities to CO₂ emissions during the sugarcane field reform.     

Effects of Recent Human Colonization on the Presence of Mercury in Amazonian Ecosystems

Three Hg sources were characterised and mass balance calculations were used to determine their relative contributions to the contamination of the Amazonian environment. About an order of magnitude more Hg is emitted to the atmosphere by goldmining activity than by the burning of forest biomass. However, anthropogenic atmospheric Hg cannot account for the high Hg burdens found in terrestrial ecosystems: deposition of Hg from goldmining sources is estimated to account for less than 3% of the Hg present in the surface horizons of soils. We propose that erosion of deforested soils following human colonization constitutes a major disturbance of the natural Hg cycle. Deforestation thus increases soil Hg mobilisation by runoff, which may explain the increase of Hg burdens in Amazonian aquatic ecosystems in newly colonized watersheds.     

Salix rubens and Salix triandra Species as Phytoremediators of Soil Contaminated with Petroleum-Derived Hydrocarbons

The petroleum industry activities provide potential risks to the environment because they can contaminate ecosystems with different organic compounds in the production chain. Several accidents with transport and handling of petroleum and related products occurred in urban areas with harmful effects to the quality of life and economy. In the 1990s, bioremediation and phytoremediation technologies as economically feasible alternatives to repair the environmental damage were developed. In this study, the potential of the willows Salix rubens and Salix triandra were evaluated with regard to the phytoremediation of soils contaminated with petroleum-derived hydrocarbons (total hydrocarbons and polycyclic aromatic hydrocarbons (PAHs)). The PAHs were quantified by extraction from soils and plants using dichloromethane under ultrasonication. The HPLC analysis was performed with GC/MSD equipment. The total hydrocarbons present in uncontaminated soil were quantified by the sum of animal/vegetable oils and greases and mineral oils and greases according to Standard Methods 5520 (1997). The two willows species S. rubens and S. triandra were resistant during the project development. In the contaminated soil, in which both species were planted, the total hydrocarbons concentration was reduced near 98?%. The PAHs content was remarkably reduced as well. Pyrene showed an initial concentration of 23.06???g?kg^?1, decreasing in most cases to 0.1???g?kg^?1 or to undetectable levels. Chrysene decreased from 126.27???g?kg^?1 to undetectable levels. Benzo[k]fluoranthene and benzo[a]pyrene concentrations had also showed a decrease from 28.44 and 3.82???g?kg^?1, respectively, to undetectable levels.     

Demonstration of pectic polysaccharides in cork cell wall from Quercus suber L

Scanning electron microscopy (SEM) and chemical analysis were used to observe the cell wall changes that occur in cork with "mancha amarela", when compared to a standard cork. To mimic the microbial attack exhibited in cork with mancha amarela, the standard cork was treated enzymatically with commercial pectinase and hemicellulase preparations. The tissues treated with pectinase were comparable with those attacked with mancha amarela. Both were composed by deformed and wrinkly cells and exhibited cell wall separation at the middle lamella level, which suggests solubilization/removal of the pectic polysaccharides. The cork cell wall material, prepared as alcohol-insoluble residue, was fractionated by hot water (Pect(H)()2(O)) and hot dilute acid (Pect(acid)). The relatively large amount of hexuronic acid and the occurrence of Ara in the SPect(H)()2(O) and SPect(acid) allow to confirm, as far as we know, for the first time the presence of pectic polysaccharides in the cell walls of cork from Quercus suber L. They accounted for ca. 1.5% of the cork and may consist of polymers with long side chains of arabinosyl residues. These polymers have to be taken into account in any realistic model of the cork cell wall. Cork with mancha amarela contained a smaller amount of pectic polysaccharides (ca. 0.5%), which confirms that the cellular separation observed by SEM is related to the degradation/removal of the middle lamella pectic polysaccharides.     

Tracking Anthropogenic Inputs in Barigui River, Brazil Using Biomarkers

The Barigüi River watershed is located in the metropolitan region of Curitiba, Southern Brazil, passing through several neighboring counties. In recent years, due to growth and disorderly occupation along the river, in addition to lack of sanitation, the Barigüi River suffered a very large inflow of untreated domestic wastewater. Current programs to monitor the watershed use traditional physical–chemical parameters. Here, the presence of some molecular tracers found in domestic effluents was investigated, such as caffeine and coprostanol at some selected sites in Barigüi River. Caffeine is highly soluble in water and its presence in water bodies is due to the disposal of untreated sewage. Caffeine is eliminated in the urine (approximately 0.5% to 10% of the consumption). The samples were collected in three campaigns, two in dry weather and another during a week in the rainy season. The results showed that caffeine concentration ranged between zero and 753.5 μg g^?1. Higher values were found on rainy days. Caffeine showed a positive correlation between BOD and nitrate; it also showed a positive correlation with coprostanol, a fecal biomarker. Finally, caffeine has been shown to be a good parameter to determine the contamination by domestic wastewater.