Jackknife method for estimating the variance of the age composition using two-phase sampling with an application to commercial catches of swordfish (Xiphias gladius)

An estimate of the age composition of a commercial swordfish catch and its variance was obtained using the replicate full jackknife estimator for two-phase sampling where the sampling units in the first phase are clusters (vessel-trips) and the units of the second phase are individual fishes. The jackknife variance estimator was compared with an analytical estimator of variance commonly used in fisheries studies which ignores the clustering, and assumes simple random sampling of individual fish. The application of these naïve estimators to the Chilean South Pacific swordfish fishery results in an underestimation of the variance. This is a consequence of using an inappropriate primary sampling unit of analysis in the first-phase sample where the vessel-trip unit is replaced by an individual fish unit, thus ignoring the intra-cluster correlation in age samples. The jackknife estimator of variance is an alternative useful for complex two-phase sampling designs.     

The effect of temperature on the energy budget of the Manila clam, <Emphasis Type="Italic">Ruditapes philippinarum</Emphasis>

In this study, the energy budget of the Manila clam, Ruditapes philippinarum, was evaluated after one-week acclimation periods at 5, 10, 15, 20, and 25°C. Small clams (151 ± 12 mg DW) and large clams (353 ± 16 mg DW) were fed with the microalgae, Isochrysis galbana. Filtration rate, ingestion rate, assimilation efficiency, oxygen-consumption rate, and ammonia excretion rate were measured. Both filtration rate and ingestion rate of small and large clams were found to be related to temperature. The highest Q ₁₀ values were measured in the range 15–20°C for both small and large clams. Assimilation efficiency of both small and large clams was not significantly influenced by temperature, although the maximum mean values were detected at 20°C. Oxygen consumption rate and ammonia excretion rate of small and large clams were found to be related directly to temperature over the entire range, with a maximum being detected at 25°C. The highest Q ₁₀ value was estimated in the range 10–15°C with regard to oxygen consumption rate, and in the range of 15–20°C with regard to ammonia excretion rate. Scope for growth (SFG) was positive at all temperatures, achieving a maximum value at 20°C in both small and large clams, primarily as a consequence of the enhanced ingestion rate which offset the concomitant elevation in the metabolic rate. In this study we have estimated the thermal optimum for this species at 20°C.     

Exploring the efficacy of vaccine techniques in juvenile sablefish,Anoplopoma fimbria

Wild sablefish, Anoplopoma fimbria, are a valuable commercial species whose populations are declining. Fortunately, sablefish are excellent species for commercial aquaculture. Sablefish raised under high‐density conditions in the marine environment require the use of efficacious vaccines to control disease. Sablefish impacted by disease in net pens may have poor flesh quality and high mortality during grow‐out. As a result, disease can cause financial hardship for sablefish aquaculture operators. The efficacy of a multivalent vaccine preparation for sablefish, administered either by intraperitoneal (i.p.) injection or by immersion, against atypical and typical Aeromonas salmonicida, the causative agents of atypical and typical furunculosis, respectively, was examined. A. salmonicida can affect sablefish at any age and size. Consequently, an efficacious vaccine that can be appropriately and optimally administered to all life stages is desirable. Sablefish vaccinated by immersion at ~1.5 or ~4.5 g with a whole‐cell multivalent vaccine were not protected against either typical or atypical A. salmonicida. Factors that may have contributed to the ineffectiveness of the immersion vaccine are discussed. By contrast, the relative per cent survival (RPS) or potency of the whole‐cell multivalent vaccine injected i.p. in juvenile sablefish at ~50 g against typical and atypical A. salmonicida was 94.3% and 81.7% respectively. The high RPS values indicated that the vaccine successfully initiated an immune response in sablefish upon a second encounter with the pathogen.     

N2O production in the organic and mineral horizons of soil had different responses to increasing temperature

Journal of Soils and Sediments - The responses of N2O emission to increasing temperature in different soil horizons are not clearly understood yet. Here, we investigated the effects of increasing...     

Biochar-induced changes in soil properties affected immobilization/mobilization of metals/metalloids in contaminated soils

Purpose

Remediation of metal contaminated soil with biochar is attracting extensive interest in recent years. Understanding the significance of variable biochar properties and soil types helps elucidating the meticulous roles of biochar in immobilizing/mobilizing metals/metalloids in contaminated soils.

Materials and methods

Six biochars were produced from widely available agricultural wastes (i.e., soybean stover, peanut shells and pine needles) at two pyrolysis temperatures of 300 and 700 °C, respectively. The Pb-, Cu-, and Sb-contaminated shooting range soils and Pb-, Zn-, and As-contaminated agricultural soils were amended with the produced biochars. The mobility of metals/metalloids was assessed by the standard batch leaching test, principal component analysis and speciation modeling.

Results and discussion

The changes in soil properties were correlated to feedstock types and pyrolysis temperatures of biochars based on the principal component analysis. Biochars produced at 300 °C were more efficient in decreasing Pb and Cu mobility (>93 %) in alkaline shooting range soil via surface complexation with carboxyl groups and Fe-/Al-minerals of biochars as well as metal-phosphates precipitation. By contrast, biochars produced at 700 °C outperformed their counterparts in decreasing Pb and Zn mobility (100 %) in acidic agricultural soil by metal-hydroxides precipitation due to biochar-induced pH increase. However, Sb and As mobility in both soils was unfavorably increased by biochar amendment, possibly due to the enhanced electrostatic repulsion and competition with phosphate.

Conclusions

It is noteworthy that the application of biochars is not equally effective in immobilizing metals or mobilizing metalloids in different soils. We should apply biochar to multi-metal contaminated soil with great caution and tailor biochar production for achieving desired outcome and avoiding adverse impact on soil ecosystem.

     

利用网格法确定县域农田整治优先度

为了科学测算农田整治难度系数,合理确定不同评价单元整治的优先次序,该文根据研究区域农田整治特点,以江苏省宝应县为例,以规则网格为评价单元,从土地利用结构、农田空间格局、可提高生产能力、土壤环境质量、人口社会因素等5个影响因素,构建农田整治优先度评价指标体系。对研究区按1′×1′的经纬度网格划分的532个网格评价单元进行农田整治优先度测算,并根据计算结果,按整治优先顺序将整个研究区划分为近期、中期和远期网格单元,分别占42%、31%和27%。远期网格单元分布在宝应县中部和南部的平原区,该区域农田的连片性、细碎度和质量等别等优于其他区域。研究结果表明,该文提出的区域农田整治优先度评价方法,有助于确定农田整治先后顺序,明确优先开展整治区域和方向。该方法为区域土地整治规划提供支撑,也为中国各县市开展高标准基本农田建设提供科学参考。     

Characterization of phytochemicals and antioxidant activities of a purple tomato (Solanum lycopersicum L.)

A newly developed nongenetically modified purple tomato V118 was investigated for its phytochemical compositions and antioxidant activities. A highly efficient and sensitive UPLC method was developed for both the phenolics and carotenoids, which showed that in addition to the phytochemicals commonly known for tomatoes, V118 had a unique composition of anthocyanins. The total carotenoid content of V118 was 234.78 μg/g dry weight (DW), and the total phenolic content was 659.11 mg GAE/100 g DW. The antioxidant activities of the lipophilic extract as measured by the PCL and ORAC-L assays were 30.11 μmol TE/g DW and 11.97 μmol TE/g DW, respectively, while the hydrophilic extracts as determined by the ORAC-H and FRAP assays were 323.23 μmol TE/g DW and 54.95 μmol AAE/g DW, respectively. The LC-MS study showed three major anthocyanins, which were mainly acylglycosides of petunidin and malvidin. This study showed that purple tomatoes such as V118 possess additional phytochemicals like anthocyanins, which can potentially have added health benefits.     

Diesel and glyphosate price changes benefit the economics of conservation tillage versus traditional tillage

Recent increases in diesel price and decreases in glyphosate [N-(phosphonomethyl) glycine] price should favor the profitability and farmer acceptance of herbicide-intensive conservation tillage systems versus fuel-intensive traditional tillage (TT) systems. Profitability results from a long-term field experiment that compared TT, minimum tillage (MT), and delayed minimum tillage (DMT) systems for winter wheat–(Triticum aestivum L.)summer fallow in eastern Washington, USA were calculated using both 1998 and 2005 input prices. Net returns for the MT and DMT systems increased by US$ 6.37 and 6.30 (rotational ha)⁻¹, respectively, and net returns to the TT system decreased by US$ 2.36 (rotational ha)⁻¹ when 2005 versus 1998 prices were used. Here, rotational ha equals 0.5 ha fallow and 0.5 ha wheat. Focusing on the dominant crop of soft white winter wheat (SWWW), the 2005 price hikes pushed diesel costs up for all systems, from US$ 6.81 (rotational ha)⁻¹ for DMT to US$ 9.00 (rotational ha)⁻¹ for TT. The cost of diesel for the conservation tillage systems, relative to the cost for TT, decreased by US$ 1.50–2.20 (rotational ha)⁻¹. The conservation tillage systems accrue greater savings from the price reduction in glyphosate because they consume more of this herbicide. An unanticipated result was that relative cost savings from price changes in N fertilizer rivaled those from diesel and glyphosate because anhydrous NH₃–N was exclusively used in the experiment for TT and aqueous NH₃–N for MT and DMT. The price of anhydrous NH₃–N increased from US$ 0.55 kg⁻¹ in 1998 to 0.85 kg⁻¹ in 2005, a 56% increase. Aqueous NH₃–N only increased from $0.75 kg⁻¹ in 1998 to 0.85 kg⁻¹ in 2005, a 15% increase. The greater price increase for anhydrous NH₃–N penalized the TT system because of its use of this fertilizer. If the same source of N fertilizer were used on all three tillage systems, this fertilizer cost effect would disappear. Nonetheless, the conservation tillage systems still retained a statistically significant profitability advantage over TT even if the same fertilizer was used throughout. The sharp price increase for diesel and the concurrent price decrease for glyphosate herbicide favored the conservation tillage systems over TT in this study. Results provide strong evidence for the superior profitability of conservation tillage winter wheat–summer fallow under current economic conditions.     

Papaya seed represents a rich source of biologically active isothiocyanate

In the present study, papaya (Carica papaya) seed and edible pulp were carefully separated and then the contents of benzyl isothiocyanate and the corresponding glucosinolate (benzyl glucosinolate, glucotropaeolin) quantified in each part. The papaya seed with myrosinase inactivation contained >1 mmol of benzyl glucosinolate in 100 g of fresh seed. This content is equivalent to that of Karami daikon (the hottest Japanese white radish) or that of cress. The papaya seed extract also showed a very high activity of myrosinase and, without myrosinase inactivation, produced 460 micromol of benzyl isothiocyanate in 100 g of seed. In contrast, papaya pulp contained an undetectable amount of benzyl glucosinolate and showed no significant myrosinase activity. The n-hexane extract of the papaya seed homogenate was highly effective in inhibiting superoxide generation and apoptosis induction in HL-60 cells, the activities of which are comparable to those of authentic benzyl isothiocyanate.     

Monitoring biochemical changes in bacterial spore during thermal and pressure-assisted thermal processing using FT-IR spectroscopy

Pressure-assisted thermal processing (PATP) is being widely investigated for processing low acid foods. However, its microbial safety has not been well established and the mechanism of inactivation of pathogens and spores is not well understood. Fourier transform infrared (FT-IR) spectroscopy was used to study some of the biochemical changes in bacterial spores occurring during PATP and thermal processing (TP). Spore suspensions (approximately 10(9) CFU/mL of water) of Clostridium tyrobutyricum, Bacillus sphaericus, and three strains of Bacillus amyloliquefaciens were treated by PATP (121 degrees C and 700 MPa) for 0, 10, 20, and 30 s and TP (121 degrees C) for 0, 10, 20, and 30 s. Treated and untreated spore suspensions were analyzed using FT-IR in the mid-infrared region (4000-800 cm(-1)). Multivariate classification models based on soft independent modeling of class analogy (SIMCA) were developed using second derivative-transformed spectra. The spores could be differentiated up to the strain level due to differences in their biochemical composition, especially dipicolinic acid (DPA) and secondary structure of proteins. During PATP changes in alpha-helix and beta-sheets of secondary protein were evident in the spectral regions 1655 and 1626 cm(-1), respectively. Infrared absorption bands from DPA (1281, 1378, 1440, and 1568 cm(-1)) decreased significantly during the initial stages of PATP, indicating release of DPA. During TP changes were evident in the bands associated with secondary proteins. DPA bands showed little or no change during TP. A correlation was found between the spore's Ca-DPA content and its resistance to PATP. FT-IR spectroscopy could classify different strains of bacterial spores and determine some of the changes occurring during spore inactivation by PATP and TP. Furthermore, this technique shows great promise for rapid screening PATP-resistant bacterial spores.