Method for estimation of stem carbon fixation of Japanese black pine by combining stem analysis and soft X-ray densitometry

We derived a formula for estimating the relationship between stem carbon weight and stem volume, which was calculated from DBH and tree height using a combination of stem analysis and soft X-ray densitometry. The results indicate carbon weight in a 33-year-old coastal Japanese black pine (Pinus thunbergii) forest is approximately 68,186 kg ha^?1 in Yamagata Prefecture and 38,253 kg ha^?1in a 42-year-old black pine forest in Hokkaido Prefecture, Japan. Also, age-related changes in the stem density following oven-drying of samples of black pine trees are small: the oven-dried density (hereafter “density”) of black pine trees in the two locations mentioned above were 425.6 (kg m^?3) and 523.2 (kg m^?3) respectively, which is comparable to the density (converted from basic density) of black pine of Land Use, Land-Use Change and Forestry (LULUCF) (533 kg m^?3). When compared with the carbon weight by the oven-dried density of LULUCF, the carbon weights calculated from each density were 27 % lower in Yamagata and 6 % lower in Hokkaido. This difference directly affects carbon weight for large-scale estimation and thus can create an error at a regional scale. This methodology can contribute to the management of forests acting as carbon sinks.     

Contribution of the grain size QTL GS3 to yield properties and physiological nitrogen-use efficiency in the large-grain rice cultivar ‘Akita 63’

The development of crop varieties with high nitrogen-use efficiency (NUE) is thought to be important in achieving sustainable cereal crop production. The high yield large-grain rice cultivar Oryza sativa L. ‘Akita 63’ (temperate japonica) has high physiological NUE (PNUE) for grain yield (GY). Our previous study revealed that a large-grain allele of GS3 is present in ‘Akita 63’. Here, we verified the influence of GS3 on the yield properties and PNUE for GY in ‘Akita 63’. The frequency distribution of brown rice length in F₂ crosses of ‘Iwate 75’ and ‘Akita 63’ showed a continuous distribution that could be explained by GS3. A near-isogenic line was developed to substitute the GS3 segment of ‘Koshihikari’, which harbours a normal-sized grain allele, in the genetic background of ‘Akita 63’ and the line was designated as Akita63NILGS3-Koshihikari. Compared with Akita63NILGS3-Koshihikari, ‘Akita 63’ exhibited a significantly increased grain length, single brown grain weight and GY, although no significant differences were observed in the nitrogen content and above-ground biomass per unit of cultivated area. These results indicate that the GS3 large-grain allele is a contributing factor to high PNUE for GY in ‘Akita 63’. These findings will facilitate the development of nitrogen-efficient rice varieties.     

Identification of introgression lines of Oryza glaberrima Steud. with high mineral content in grains

Mineral concentrations in cereals are crucial for human health, especially for people who consume cereals as a subsistence diet. Although rice (Oryza sativa L.) is one of most important staple crops in the world, starch constitutes a large portion of its grains, and mineral concentrations are lower than in other staple crops. One solution is the improvement of mineral concentrations in rice grains through biofortification, and this approach requires investigation of genetic resources that confer high mineral concentrations to rice grains. In the present study, we performed 2 years of field experiments, in 2012 and 2013, and determined sodium (Na), magnesium (Mg), phosphorus (P), potassium (K), calcium (Ca), boron (B), manganese (Mn), iron (Fe), copper (Cu), zinc (Zn) and molybdenum (Mo) concentrations in the rice grains of 40 introgression lines derived from a cross between a japonica cultivar, Taichung 65 (T65), and African rice, Oryza glaberrima Steud. Substantial variation in mineral concentrations was observed among the 40 introgression lines. We selected several elite lines that had significantly higher concentrations of minerals, including Fe, Cu, Zn, Mo, Mg, P and Ca than the cultivated rice T65. These lines could be novel potential materials for breeding programs for biofortification and provide us with positional information for the candidate loci in the O. glaberrima genome responsible for high mineral concentrations in rice grains.     

Snapshots Analyses for Turbidity Measurements in Water

Turbidity has been used as an effective indicator of water quality and it is regulated by national control agencies as a water potability parameter. This work proposes a simple, low-cost, and easily reproducible method based on digitally processed snapshots of electromagnetic radiation beam through a scattering medium in order to measure turbidity. The formazin polymer was used as the standard reference in the experiments to prepare samples from 0.1 to 100 NTU for high turbidity range and from 0.02 to 10 FNU for low turbidity range. The device design is comprised of a webcam and an LED/laser as a light sensor and a radiation source, respectively. The captured scattered light snapshot can be decomposed digitally in color components values and correlated with the turbidity parameter. It is possible to obtain differently device performances changing the light sensor device configuration. The linear regression analyses have shown a distinct relationship among red, green, blue, and grayscale components and the turbidity. At high range, the green component present the best LOD and LOQ values 0.64 and 2.10, respectively, operating with an ordinary webcam and white LED. Nevertheless, the best device performances were obtained with dedicated Raspberry Pi camera modules and white LED for low range turbidity reaching LOD=0.027 and LOQ=0.087 FNU. The figures of merit show recovery between (97.50?101.95%), repeatability (2.11%), within-laboratory reproducibility (2.25%), and limits of quantification (0.087 FNU). The achieved performance device shows the effectiveness of digitally processed snapshots obtained with digital cameras for turbidity measurements.     

First Report of <Emphasis Type="Italic">Pepper mottle virus</Emphasis> on <Emphasis Type="Italic">Capsicum annuum</Emphasis> in Japan

Pepper mottle virus, genus Potyvirus, was first identified in Japan based on particle morphology, host range, aphid transmission, and molecular classification using the nucleotide sequence of the coat protein gene and 3-untranslated region.     

Endemic infections of bovine viral diarrhea virus genotypes 1b and 2a isolated from cattle in Japan between 2014 and 2020

Bovine viral diarrhea virus (BVDV) is a causative agent of bovine viral diarrhea. In Japan, a previous study reported that subgenotype 1b viruses were predominant until 2014. Because there is little information regarding the recent epidemiological status of BVDV circulating in Japan, we performed genetic characterization of 909 BVDV isolates obtained between 2014 and 2020. We found that 657 and 252 isolates were classified as BVDV-1 and BVDV-2, respectively, and that they were further subdivided into 1a (35 isolates, 3.9%), 1b (588, 64.7%), 1c (34, 3.7%), and 2a (252, 27.7%). Phylogenetic analysis using entire E2 coding sequence revealed that a major domestic cluster in Japan among BVDV-1b and 2a viruses were unchanged from a previous study conducted from 2006 to 2014. These results provide updated information concerning the epidemic strain of BVDV in Japan, which would be helpful for appropriate vaccine selection.     

Smenospongine,a Sesquiterpene Aminoquinone from a Marine Sponge,Induces G1 Arrest or Apoptosis in Different Leukemia Cells

Smenospongine, a sesquiterpene aminoquinone isolated from the marine sponge Dactylospongia elegans, was previously reported by us to induce erythroid differentiation and G1 phase arrest of K562 chronic myelogenous leukemia cells. In this study, we investigated the effect of smenospongine on the cell cycles of other leukemia cells, including HL60 human acute promyelocytic leukemia cells and U937 human histiocytic lymphoma cells by flow cytometric analysis. Smenospongine induced apoptosis dose-dependently in HL60 and U937 cells. The smenospongine treatment increased expression of p21 and inhibited phosphorylation of Rb in K562 cells, suggesting the p21-Rb pathway play an important role in G1 arrest in K562 cells. However, the p21 promoter was not activated by the smenospongine treatment based on a luciferase assay using the transfected K562 cells. Smenospongine might induce p21 expression via another mechanism than transactivation of p21 promoter.     

Interannual variation in quantitative relationships among egg production and densities of larvae and juveniles of the Japanese mantis shrimp <Emphasis Type="Italic">Oratosquilla oratoria</Emphasis> in Tokyo Bay,Japan

To explore which lifestages affect the stock size of young-of-the-year mantis shrimp Oratosquilla oratoria in Tokyo Bay, Japan, we investigated interannual variations in the quantitative relationships among egg production, larval density, and juvenile density. We collected adult females, larvae, and juveniles during monthly field surveys from 2004 to 2007. The interannual trend for the juvenile density index differed from those for egg production and larval density; although indices of both egg production and larval density were high in 2004 and 2007, the juvenile density index was high only in 2007, suggesting high mortality during the pelagic larval stage or the early phase of the postsettlement juvenile stage in 2004. We found that larval settlement started at the end of August and peaked in October, although larvae from the early spawning season (May–June) should have settled in August or earlier. Juveniles were found throughout the bay except in areas where bottom hypoxia occurred, suggesting that hypoxia restricts the spatial distribution of juveniles. Our results suggest that mortality during the early life history fluctuates among years, probably because of changes in environmental conditions in the bay, resulting in interannual variation in the stock size of young-of-the-year juvenile O. oratoria.