A proteomic analysis of Nipponia nippon (ID#162)

We investigated the proteome of a female Crested Ibis (Nipponia nippon, ID#162) that died on March 10, 2010 at the Sado Japanese Crested Ibis Conservation Center. Protein preparations from the brain, trachea, liver, heart, lung, proventriculus, muscular stomach, small intestine, duodenum, ovary and neck muscle were subjected to in‐solution shotgun mass spectrometry (MS)/MS analyses using an LTQ Orbitrap XL mass spectrometer. A search of the National Center for Biotechnology Information Gallus gallus databases revealed 4253 GI (GenInfo Identifier) numbers with the sum of the same 11 tissues examined in the Crested Ibis. To interpret the obtained proteomics data, it was verified in detail with the data obtained from the brain of the Crested Ibis. It has been reported that drebrin A is specifically expressed in adult chicken brain. In the shotgun proteomic analyses of the Crested Ibis, we identified drebrin A as a brain‐specific protein. Furthermore, Western blotting analysis of the protein preparations from 10 tissues of the Crested Ibis and 150‐day‐old hens using anti‐drebrin antibodies showed intensive expression of approximately 110 kDa polypeptides of drebrin in both brains. We believe firmly that the present data will contribute to initial and fundamental steps toward understanding the Crested Ibis proteome.     

Development of highly sprouting tolerant wheat germplasm with reduced germination at low temperature

The development of sprouting tolerant spring and winter wheat varieties that retain dormancy in cool, wet conditions is a long-term objective in Hokkaido, Japan. A highly tolerant spring dwarf line, “OS21-5”, derived from “Tordo” × “Zenkoji”, was used to develop transgressive spring, “OS38” and “OS74”; and winter, “OW77”, “OW104” and “OW93” wheats. More recently, winter lines with improved agronomic performance, though still deficient in quality and scab resistance, have been identified. In general, germination percentage of mature grain at 10 ^°C was closely related to the mean temperature experienced during the 5 days prior to maturity (dough–yellow ripening stage) and to the capacity to maintain a high amylograph paste viscosity. Dormancy at 10 ^°C appeared to be determined by a combination of genotype and variation in sensitivity to temperature during the later stages of ripening. Genotypes such as “OS38” and ‘OWl04’ were both highly tolerant to germination at 10 ^°C and insensitive to temperature during ripening. By comparison, most of the other cultivars showed a similar, intermediate sensitivity to ripening temperature, and dormancy decreased as ripening temperature increased. Dormancy of‘RL4137’ at maturity, and to a lesser extent ‘Gifukomugi’ and ‘KKI354’, was very sensitive to ripening temperature and useful levels of dormancy only developed under cool ripening temperatures, mean temperature < 18–20 ^°C.     

Impact of a 5-year winter cover crop rotational system on the molecular diversity of arbuscular mycorrhizal fungi colonizing roots of subsequent soybean

The impact of winter cover crops, specifically wheat (Triticum aestivum L.), red clover (Trifolium pratense L.), and rapeseed (Brassica napus L.) or winter fallow, on community composition of arbuscular mycorrhizal fungi (AMF) in subsequent soybean roots was investigated in a 5-year field trial on andosolic soils in Japan. Soybean roots were sampled at full-flowering and analyzed for AMF communities using a partial LSU rDNA region. Phylogenetic analysis detected 22 AMF phylotypes, including eight Glomus, three Gigaspora, two Scutellospora, three Acaulospora, two Rhizophagus, and one of Funneliformis, Diversispora, Paraglomus, and an unknown glomeromycete in the roots. The 5-year rotation of different winter cover crops or winter fallow did not impact the molecular diversity of AMF communities colonizing the roots of subsequent soybean. In all of the rotations, Glomus and Gigaspora phylotypes were common to soybean roots over the 5-year period. Redundancy analysis (RDA) demonstrated that AMF communities in the roots of subsequent soybean were not significantly different among winter cover crop rotations or fallow. However, AMF communities in soybean roots were clearly influenced by rotation year suggesting that climate or other environmental factors were more important than winter cover cropping system management.     

Quality evaluation of different types of non-fish meal diets for yellowtail

SUMMARY: Two feeding experiments were conducted to evaluate the feed quality of non-fish meal diets having the same protein ingredient composition but prepared as different types, and to determine the supplemental effect of crystalline essential amino acids (EAA) on feed utilization by young yellowtail, Seriola quinqueradiata . Non-fish meal diets formulated with soy protein concentrate, defatted soybean meal, corn gluten meal, meat meal, and krill meal were prepared as either soft dry pellets (SDP) or extruded pellets (EP) by using a large- or a small-sized twin screw extruder under different preparation conditions; or as a single moist pellet (SMP), each with and without EAA mixtures. Commercial yellowtail SDP was used as the control diet. Fish weighing 134 g and 237 g on average were reared with the experimental diets, for 93 (net cages) and 44 (aquariums) days, respectively. The fish fed both the control and test diets were found to have a good appetite. Growth rate and feed gain ratio were highest in the control diet group. The physiological condition of fish fed the control diet was evaluated as superior compared to those on the non-fish meal diets. Among the non-fish meal diet groups, the best performances were obtained for fish fed the SDP type diet with EAA supplement, and performance parameters excelled in the order of SDP, EP and SMP both among the diets with and without supplemental EAA. This suggests that the nutritional quality of non-fish meal diet was affected by the diet preparation method. It also indicates that supplementation of EAA could improve the quality of non-fish meal diets, irrespective of the diet type, probably as a result from the enhancement of feed protein utilization.     

Properties of Starches from Several Low‐Amylose Rice Cultivars

The starch properties of five low‐amylose rice cultivars, Yawarakomachi, Soft 158, Hanabusa, Aya, and Snow Pearl, were compared with those of two normal amylose rice cultivars, Nipponbare and Hinohikari. There were no large differences in the distributions of the amylopectin chain length determined by high‐performance anion‐exchange chromatography, and the starch gelatinization properties determined by differential scanning calorimetry, between normal and low‐amylose rice cultivars. Results obtained using rapid viscosity analysis indicated that low‐amylose rice starches had lower peak viscosity, breakdown, and setback values than normal amylose rice starches. Starch granules from low‐amylose rice cultivars had a higher susceptibility to glucoamylase than those from normal amylose rice cultivars. The results of this study showed some differences between normal and low‐amylose rice starches in pasting properties and enzymatic digestibility.