Development of a genomic tool for breed assignment by comparison of different classification models: Application to three local cattle breeds

Assignment of individual cattle to a specific breed can often not rely on pedigree information. This is especially the case for local breeds for which the development of genomic assignment tools is required to allow individuals of unknown origin to be included to their herd books. A breed assignment model can be based on two specific stages: (a) the selection of breed-informative markers and (b) the assignment of individuals to a breed with a classification method. However, the performance of combination of methods used in these two stages has been rarely studied until now. In this study, the combination of 16 different SNP panels with four classification methods was developed on 562 reference genotypes from 12 cattle breeds. Based on their performances, best models were validated on three local breeds of interest. In cross-validation, 14 models had a global cross-validation accuracy higher than 90%, with a maximum of 98.22%. In validation, best models used 7,153 or 2,005 SNPs, based on a partial least squares-discriminant analysis (PLS-DA) and assigned individuals to breeds based on nearest shrunken centroids. The average validation sensitivity of the first two best models for the three local breeds of interest were 98.33% and 97.5%. Moreover, results reported in this study suggest that further studies should consider the PLS-DA method when selecting breed-informative SNPs.     

Progress Toward an Attract-and-Kill Device for Asian Citrus Psyllid (Hemiptera: Liviidae) Using Volatile Signatures of Citrus Infected With Huanglongbing as the Attractant

Asian citrus psyllid, Diaphorina citri (Kuwayama), preferentially orient toward citrus hosts infected with the phytopathogenic bacterium, Candidatus liberibacter asiaticus (CLas) the agent of citrus greening (Huanglongbing, HLB), compared to uninfected counterparts. We investigated whether this preference for the odors of infected plants could be useful for the development of an attract-and-kill (AK) device for D. citri. Twenty-nine blends of volatile organic compounds derived from the odor of citrus infected with CLas were tested in laboratory olfactometer tests, and two blends were also assessed under field conditions. A seven component blend of tricosane: geranial: methyl salicylate: geranyl acetone: linalool: phenylacetaldehyde: (E)-β-ocimene in a 0.40: 0.06: 0.08: 0.29: 0.08: 0.06: 0.03 ratio released from a proprietary slow-release matrix attracted twice more D. citri to yellow sticky traps compared with blank control traps. The attractive blend was subsequently co-formulated with spinosad insecticide into a slow-release matrix to create a prototype AK formulation against D. citri. This formulation effectively reduced the population density of D. citri up to 84% as measured with tap counts when deployed at a density of eight 2.5 g dollops per tree as compared with untreated controls in small plot field trials conducted in citrus orchards. Psyllid populations were not statistically affected at a deployment rate of four dollops per tree. Our results indicate that an AK formulation incorporating spinosad and a volatile blend signature of citrus greening into a slow-release matrix may be useful to suppress D. citri populations.     

Influence of UV Exposure on Phenolic Acid Content,Mechanical Properties of Bran,and Milling Behavior of Durum Wheat (Triticum Durum Desf.)

Durum wheat bran was exposed to UV radiation up to 48 hr and the changes in ferulic acid (FA) content in the peripheral part s of grain were measured. The treatment resulted in a 25% decrease in FA monomer and a 44% decrease in dehydrodiferulic acid (DHD) ester‐linked to the cell‐wall arabinoxylans. This reduction was partly explained by a significant increase of FA (30%) and DHD (36%) engaged in hot alkali‐labile linkages. The results suggest that UV irradiation induced the formation of new cross‐links between feruloylated arabinoxylan and lignin in the pericarp. The effects of UV treatment on bran mechanical properties and wheat milling behavior were investigated. UV irradiation for 15 hr increased the stress to rupture by 30% and decreased the extensibility of bran tissues by 54%. This stiffening was associated with an increase in bran friability during grinding. Although this effect was due in part to the hydrothermal history of the grain, chemical modification induced by UV significantly influenced the size reduction of bran particles, which can be explained by the modification of the mechanical properties of bran. Relationships between the organization of cell‐wall polymers, the mechanical properties of tissues, and the behavior of wheat grain during milling were investigated.     

Increasing trend of extreme rain events over India in a warming environment

Against a backdrop of rising global surface temperature, the stability of the Indian monsoon rainfall over the past century has been a puzzle. By using a daily rainfall data set, we show (i) significant rising trends in the frequency and the magnitude of extreme rain events and (ii) a significant decreasing trend in the frequency of moderate events over central India during the monsoon seasons from 1951 to 2000. The seasonal mean rainfall does not show a significant trend, because the contribution from increasing heavy events is offset by decreasing moderate events. A substantial increase in hazards related to heavy rain is expected over central India in the future.     

Cooking behavior of rice in relation to kernel physicochemical and structural properties

A set of 27 rice varieties were evaluated for their morphological grain characteristics (length, width, thickness, thousand kernel weight, TKW), chemical composition (amylose, protein, and ash content) and starch properties (gelatinization temperature and enthalpy, amylose-lipid complex). In addition, cell walls were characterized by the arabinoxylan and beta-glucan contents. A rapid method for determining optimum rice cooking time was developed based on the swelling ratio; a fixed value of 2.55 gave a gelatinization level of 95% assessed by differential scanning calorimetry and translucence testing. Optimum cooking time appears positively correlated with kernel thickness and TKW but also with ash content. Confocal laser and scanning electron microscope observation of uncooked rice grains revealed different structural features (cell size) and fracture behavior: for some cultivars, the fracture showed ruptured cells, whereas for others most cells were intact. These structural differences, which may be linked to pectin content, could partly explain rice kernel cooking behavior.     

Short‐term variation in the ecological status of a Mediterranean coastal lagoon (NE Iberian Peninsula) after a man‐made change of hydrological regime

• 1. The Ter Vell (NE Iberian Peninsula) is a eutrophic coastal lagoon that has been mostly flooded by excessive irrigation water during recent decades. During 2001 and 2002 the lagoon was subject to several water management actions, the main consequence of which was a change in the hydrological regime due to drastically reduced irrigation water inputs to the lagoon.
• 2. In order to comply with the Water Framework Directive, all the management actions in an ecosystem should be focused on protecting and, where necessary, improving its ecological status.
• 3. The aims of this study were (1) to analyse whether the hydrological change caused by management actions have affected the ecological status of the lagoon, and (2) to discuss the suitability of several physicochemical and biological indicators for the assessment of the ecological status in this kind of coastal ecosystem.
• 4. After the change in the hydrological regime, a general improvement of the ecological status was observed mainly as a result of the significant decrease in the nitrogen Trophic State Index and in the abundance of rotifer indicative of eutrophy, and in turn by the significant increase in the water quality index QAELS, based on crustaceans and insect assemblages.
• 5. Contradictory results emerged with regard to some of the indicators used. After the hydrological change, the increase in the phosphorus Trophic State Index was related with the fact that Mediterranean confined coastal ecosystems are typically P‐enriched. In contrast with general assumptions, low diversity and richness of the zooplankton and the dominance of a few species have been related with an improvement of the ecological status after the hydrological change, when freshwater inputs were reduced and the lagoon became more confined.

Copyright © 2008 John Wiley & Sons, Ltd.