Haloperoxidase Mediated Quorum Quenching by Nitzschia cf pellucida: Study of the Metabolization of N-Acyl Homoserine Lactones by a Benthic Diatom

Diatoms are known to produce a variety of halogenated compounds, which were recently shown to have a role in allelopathic interactions between competing species. The production of these compounds is linked to haloperoxidase activity. This research, has shown that this system may also be involved in diatom-bacteria interactions via the H₂O₂ dependent inactivation of a type of quorum sensing (QS) molecule, i.e., N-β-ketoacylated homoserine lactones (AHLs), by a natural haloperoxidase system from the benthic diatom Nitzschia cf pellucida. The AHL degradation pathway towards corresponding halogenated derivatives was elucidated via HPLC-MS analysis and the synthesis of a broad series of novel halogenated AHL analogues as reference compounds. Furthermore, their biological activity as quorum sensing modulators was directly compared and evaluated against a series of naturally occurring β-keto-AHLs. It has been demonstrated that the loss of the QS activity results from the final cleavage of the halogenated N-acyl chain of the signal molecules.     

The Image of Fish from Aquaculture Among Europeans: Impact of Exposure to Balanced Information

This study investigated the effect of balanced, nonpersuasive information related to safety, healthiness, and sustainability of aquaculture on the image of farmed fish among European consumers. It was demonstrated that there is neither positive nor negative influence of this type of information on the predominantly positive image of fish from aquaculture. Consumers who were exposed to information related to the EU origin and aquaculture related guarantee reported a more positive image of farmed fish. These results provide valuable input for transparent communication about fish farming practices which might increase consumer trust and will not harm the image of fish from aquaculture. Increasing consumers' knowledge about aquaculture and its positive effects on the image of farmed fish is also discussed as a pathway for maintaining and improving aquaculture's positive image in the future.     

Multiple species-specific controls of root-feeding nematodes in natural soils

One of the major limitations to enhance sustainability of crop production systems is the inability to control root-feeding nematodes without using chemical biocides. In soils under wild vegetation, however, root-feeding nematodes affect plant performance and plant community composition varying from substantially to insignificantly. Previous studies in natural ecosystems have already shown that mutualistic symbionts, such as arbuscular mycorrhizal fungi and endophytes, may influence plant exposure to root-feeding nematodes. In order to learn more from natural systems, we examined nematode control in the root zone of a wild coastal foredune grass by microorganisms, other nematodes and microarthropods. We cultured all eight root-feeding nematode species that occur in the root zone of marram grass (Ammophila arenaria) in coastal foredunes of the Netherlands. Then, in an indoor growth experiment we exposed each nematode species to the potential natural antagonists collected from the same dune soil. Most of the eight dominant root-feeding nematode species could be controlled to some extent by more than one group of soil organisms added. The effectiveness of control varied among nematode species, which seemed to be controlled in a species-specific way. We conclude that in a natural soil the effectiveness of control by microorganisms, other nematodes or microarthropods varies among root-feeding nematode species. Most are controlled, at least to some extent, by soil microbes. However, some root-feeding nematode species are controlled only by microarthropods. Our results strongly suggest that sustainable agriculture will benefit from using a range of biological control mechanisms when controlling root-feeding nematodes, rather than relying on single control agents. Our suggestion also implies that conserving soil biodiversity is crucial in order to enhance the reliability of biological crop protection against soil-borne pests and diseases.     

Analysis of return flows in a tank cascade system in Sri Lanka

In Sri Lanka, irrigation reservoirs (tanks) are usually connected sequentially and form cascades along the landscape. A study was carried out in the Anuradhapura District in the dry zone of Sri Lanka to understand the role of return flows in such tank cascade systems. The water balance of a tank cascade system was estimated using hydrological data collected over a one-year period. The system was extended about 25 km along a river composed of three small reservoirs having the command area of 31, 55, and 55 ha, respectively. In this system, about 46% of seepage water from tanks entered the paddy fields of the command area. The crop consumed part of the water and the rest returned to the downstream tank through the drainage canals. Percolation loss in the command areas was low (3.6 mm/day) since a considerable portion of the percolation returned to the downstream tank. These results showed that return flows, which are generally disregarded in the water budget, contributed considerably to the water supply of the tank cascade system.     

Evaluation of functional muscle anatomy scalability in the canine hind limb

In contrast to other mammals, the large variation in dog sizes is not accompanied by any significant genetic re-organization. In order to study the relationship between body mass, limb length and the functional anatomical muscle parameters of the canine hind limb, a large dataset comprising of muscle masses, optimal muscle fibre lengths and physiological cross-sectional area's (PCSA) were acquired for twenty-five muscles in ten dogs of sizes varying between 20 kg and 52 kg. The potential of body mass and limb length for reliably scaling individual muscle masses, optimal muscle fibre lengths and PCSA's were examined. For the majority of the muscles of the canine hind limb, neither body mass nor limb length were reliable scaling parameter for either muscle masses, PCSA's and optimal fibre length. These results indicate the need of a breed-specific approach to musculoskeletal modelling in future canine musculoskeletal research.     

A global benchmark map of water productivity for rainfed and irrigated wheat

The growing pressure on fresh water resources demands that agriculture becomes more productive with its current water use. Increasing water productivity is an often cited solution, though the current levels of water productivity are not systematically mapped. A global map of water productivity helps to identify where water resources are productively used, and identifies places where improvements are possible. The WATPRO water productivity model for wheat, using remote sensing data products as input, was applied at a global scale with global data sets of the NDVI and surface albedo to benchmark water productivity of wheat for the beginning of this millennium. Time profiles of the NDVI were used to determine the time frame from crop establishment to harvest on a pixel basis, which was considered the modelling period. It was found that water productivity varies from approximately 0.2 to 1.8 kg of harvestable wheat per cubic metre of water consumed. From the 10 largest producers of wheat, France and Germany score the highest country average water productivity of 1.42 and 1.35 kg m⁻³, respectively. The results were compared with modelling information by Liu et al. (2007) who applied the GEPIC model at a global scale to map water productivity, and by Chapagain and Hoekstra (2004) who used FAO statistics to determine water productivity per country. A comparison with Liu et al. showed a good correlation for most countries, but the correlation with the results by Chapagain and Hoekstra was less obvious. The global patterns of the water productivity map were compared with global data sets of precipitation and reference evapotranspiration to determine the impact of climate and of water availability reflected by precipitation. It appears that the highest levels of water productivity are to be expected in temperate climates with high precipitation. Due to its non-linear relationship with precipitation, it is expected that large gains in water productivity can be made with in situ rain water harvesting or supplemental irrigation in dry areas with low seasonal precipitation. A full understanding of the spatial patterns by country or river basin will support decisions on where to invest and what measures to take to make agriculture more water productive.     

A modified fluorometric method to quantify the concentration effect (pI50) of photosystem II-inhibiting herbicides

Chlorophyll fluorescence induction curves of isolated thylakoids were measured in the absence and in the presence of various concentrations of photosystem II-inhibiting herbicides. A mathematical program was applied to simulate the curves. Based on these simulated curves a new method is developed to determine the concentration effect (pI₅₀) of the herbicides. The results of the new method correspond well with reported values in the literature. The method is very convenient and time-saving.     

Relation between Soil Health, Wave-like Fluctuations in Microbial Populations, and Soil-borne Plant Disease Management

A healthy soil is often defined as a stable soil system with high levels of biological diversity and activity, internal nutrient cycling, and resilience to disturbance. This implies that microbial fluctuations after a disturbance would dampen more quickly in a healthy than in a chronically damaged and biologically impoverished soil. Soil could be disturbed by various processes, for example addition of a nutrient source, tillage, or drying-rewetting. As a result of any disturbance, the numbers of heterotrophic bacteria and of individual species start to oscillate, both in time and space. The oscillations appear as moving waves along the path of a moving nutrient source such as a root tip. The phase and period for different trophic groups and species of bacteria may be shifted indicating that succession occurs. DGGE, Biolog and FAME analysis of subsequent populations in oscillation have confirmed that there is a cyclic succession in microbial communities. Microbial diversity oscillates in opposite direction from oscillations in microbial populations. In a healthy soil, the amplitudes of these oscillations will be small, but the background levels of microbial diversity and activity are high, so that soil-borne diseases will face more competitors and antagonists. However, soil-borne pathogens and antagonists alike will fluctuate in time and space as a result of growing plant roots and other disturbances, and the periods and phases of the oscillations may vary. As a consequence, biological control by members of a single trophic group or species may never be complete, as pathogens will encounter varying populations of the biocontrol agent on the root surface. A mixture of different trophic groups may provide more complete biological control because peaks of different trophic groups occur at subsequent locations along a root. Alternatively, regular addition of soil organic matter may increase background levels of microbial activity, increase nutrient cycling, lower the concentrations of easily available nutrient sources, increase microbial diversity, and enhance natural disease suppression.     

Predicting land cover changes and their impact on the sediment influx in the Lake Balaton catchment

The land cover pattern in the Lake Balaton catchment (Hungary) has been changing since decollectivization in the 1990s. These land cover changes significantly impact the landscape connectivity, controlling the influx of sediments into the lake. A comparison of high resolution land cover maps from 1981, 2000 and 2005 showed a significant extensification of the agriculture with land cover conversions from arable land and vineyards to grassland and forest. For each land unit transition probabilities were assessed using logistic regression techniques to evaluate to which extent land cover changes are controlled by physical or socio-economic parameters. A stochastic land cover allocation algorithm was applied to generate future land cover patterns. The landscape connectivity for each of the simulated land cover patterns was assessed by means of a distributed routing algorithm. The simulations suggest that further land abandonment in the upslope parts of the catchment will cause a non-linear reduction of average soil erosion rates. The changes, however, have a relatively low impact on the sediment volume entering the lake because of the land unit’s poor connectivity with permanent river channels. The major contributors to the lakes sediment load are the vineyards near the lakeshore. They are likely to be maintained because of their touristic value. A significant reduction of the total sediment input in the lake can be expected only if soil conservation measures in the vineyards near the shorelines are undertaken.