Streptococcosis,Lactococcosis and Enterococcosis are potential threats facing cultured Nile tilapia (Oreochomis niloticus) production

Streptococcosis, lactococcosis and enterococcosis are among the most important bacterial diseases affecting tilapia farms in Kafr Elsheikh governorate, Egypt. A number of clinically diseased fish were collected and submitted to our laboratory during disease outbreak in 2018. They were characterized by nervous swimming behaviour, skin darkness, exophthalmia, ocular opacity and haemorrhages. Necropsy findings were splenomegaly, congestive hepatomegaly, liquefied brain and enteritis. The phenotypic and molecular characterizations of the bacterial strains isolated from naturally infected fish identified three genera of Gram‐positive cocci: Streptococcus agalactiae, Enterococcus faecalis and Lactococcus garvieae. Infectivity trials were conducted in four groups of Nile tilapia inoculated with S. agalactiae Egy‐1, E. faecalis Egy‐1 and L. garvieae Egy‐1 strains and saline. Mortalities, clinical signs and pathological findings were recorded daily 14 days post infection. Experimentally infected tilapia showed similar clinical signs, postmortem lesions, but varied in the severity and experienced high mortalities up to 70% in case of S. agalactiae and L. garvieae infections and 30% in case of E. faecalis infection. Pathological examination of infected tissue sections stained with modified Brown–Brenn and immunohistochemistry revealed an important direct correlation between the distribution of each bacterial isolate and the lesions developed in different organs. Furthermore, the isolates were subjected to profiling against 11 antibiotics, and they showed resistance against several types of antibiotics, which implicate potential risk to human health and emphasize the urgent need for alternate bio‐control strategies to prevent the diseases and the problem of multidrug resistance in aquatic environment.     

Molecular and Immunohistochemical Diagnosis of Photobacterium damselae Subspecies piscicida During Naturally Occurring Disease in Egypt

In the marine aquaculture industry, photobacteriosis caused by the Photobacterium damselae subspecies piscicida, Phdp is a globally significant disease. A number of clinical photobacteriosis outbreaks among yearling cultured and broodstocks of gilthead sea bream were sampled and submitted to our laboratory during the summer and autumn of 2013. The tissues of infected fish were subjected to an ordinary bacteriological identification and were analyzed using the polymerase chain reaction (PCR) and immunohistochemistry techniques. The results indicated that the selective primers that have been designed for detecting the gene encoding the apoptotic‐induced protein, AIP56, represent a powerful tool for sensitive and specific detection of virulent strains of Phdp. AIP56 toxin triggers apoptosis of host macrophages and neutrophils, contributing to the lesions observed during the pathological investigation. Immunohistochemistry allows bacterial identification and antigen expression to be directly correlated to the disease; the immune‐positive bacteria were detected in gills, liver, kidneys, spleen, and brain tissues in acute photobacteriosis. These also appeared in the necrotic areas of the granulomas of chronically infected fish. Molecular and immunohistochemical methods were useful as research and diagnostic tools in different stages of the disease; moreover, they appear to have enormous potential in retrospective epidemiological investigations.     

Antimicrobial activity and cytotoxicity of Aerva lanata

Aerva lanata whole plant showed interesting antimicrobial activities (ethyl acetate and methanol extracts) and significant cytotoxic properties (petroleum ether, ethyl acetate and methanol extracts).     

Allelopathic effects of Lantana camara on germination and growth behavior of some agricultural crops in Bangladesh

An experiment was conducted to understand the growth inhibitory effects of aqueous extracts derived from Lantana camara L. （a globally recognized invasive alien weed） on six popular agricultural crops of Bangladesh. The test was conducted in sterilized petridishes with a photoperiod of 24 hours and an average temperature of 29℃. The effect of different concentrations ofL. camara leaf extracts were recorded and compared with control （i.e., distil water）. Result showed different concentrations of aqueous leaf extracts caused significant inhibitory effect on germination, root and shoot elongation and development of lateral roots of receptor crops. Bioassays also indicated that the inhibitory effect was proportional to the concentrations of the extracts and higher concentration had the stronger inhibitory effect whereas the lower concentration showed stimulatory effect in some cases. The inhibitory effect was much pronounced in root and lateral root development rather than shoot and germination.     

Genetic variation among cocoa (Theobroma cacao L.) families for resistance to cocoa swollen shoot virus disease in relation to total phenolic content

Phenolic compounds have been suggested as one of the defence mechanisms to cocoa swollen shoot virus disease (CSSVD), but not well studied. Correlation and genetic variation of total phenolic content (TPC) and CSSVD resistance among 53 cocoa families were investigated. Three‐month‐old seedlings of 15 families obtained from an incomplete 6 × 3 NCII mating design, of 24 families from a 3 × 8 NCII mating design and of 14 other families were evaluated for CSSVD and TPC. Plants were inoculated with viruliferous mealybugs carrying the New Juaben CSSV strain (1A) in a gauze house facility. A single seedling randomization within blocks procedure was followed, using the gauze house units as blocks. There were six blocks with five seedlings of each family randomized within each block. Disease severity scores on leaf flushes at the first, second, third and seventh flushes after inoculation were recorded. The TPC before and 3 months after inoculation was also determined. Family effects were highly significant (P ≤ 0.01) for CSSVD severity scores and TPC. Narrow‐ and broad‐sense heritability estimates were low for CSSVD severity but moderate to high for TPC evaluations. Correlations between severity scores and TPC were weak (r = ?0.22 to 0.40) suggesting that the TPC may be of little value in selecting CSSVD resistance varieties in cocoa. Additive effect in terms of significant GCA was important for CSSVD severity scores whereas both additive and non‐additive effects were important for TPC values when the 3 × 8 and 6 × 3 NCII mating designs were analysed. Only clones GU 239/H, GU 290/H and GU 225/V had favourable GCA effects for CSSVD symptom expression indicating their potential for developing progeny with high levels of resistance to CSSVD infection.     

Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil

Nycodenz density centrifugation (NDC) is an isolation method that allows extraction of both culturable and unculturable bacterial cells from soil, to be used in further downstream analysis; however, to date there has been a lack of information concerning the efficiency of this method. The aim of this study was therefore to investigate the overall efficiency of NDC extractions from soil and to identify sampling bias, if any.Bacterial cells were extracted from three soil plots from the Danish CRUCIAL field trial using an already established NDC protocol. To evaluate all aspects of the NDC procedure, DNA was extracted directly from soil, from NDC-extracted cells, and from the soil pellets left after NDC. Bacterial diversity was assessed by PCR amplification of the V4-V6 regions of the 16S rRNA from the extracted DNA followed by sample-tagged amplicon-pyrosequencing using the 454 Genome Sequencer FLX system. Sequences were processed and analyzed using the Ribosomal Database Project’s (RDP) Pyrosequencing Pipeline tools.In this study, we show that extraction of bacteria from soil using NDC can result in significant biases in the form of either over- or underrepresentation of specific bacterial phyla commonly found in soil. Furthermore, rarefaction analysis, analysis of similarity, multidimensional scaling plots and analysis of variance showed that the diversity in the NDC-extracted sample was reduced significantly compared to both the original soil sample and the remaining NDC-pellet. To further study the soil diversity a mathematical model was employed to estimate how many sequences would be required in order to find 95% of all operational taxonomic units (OTUs) in the soil. The model estimated that the soil contains approximately 29,400 OTUs and that just 351,500 sequences are needed to cover 95% of the bacterial biodiversity, the equivalent of one full standard GS FLX run.     

Storage protein and amino acid contents of Tunisian and Chinese pomegranate (Punica granatum L.) cultivars

In the present study, free amino acids and seed protein contents of pomegranate germplasm from Tunisia and China were conducted using Hitachi L8800 amino acid analyzer, Bradford and Kjeldahl methods. The work offers more consideration to protein pomegranate seeds which can be with great importance regarding the nutritive seed value of this crop. In other hand, the protein and amino acids contents were used to compare the Tunisian and Chinese pomegranate cultivars based on multivariate analyses (principal component and clustering analyses). Results show that the Tunisian and Chinese pomegranate seeds were rich in storage proteins independently of organoleptic taste as sweet, sour sweet or sour. Qualitatively, the storage protein and free amino acids of pomegranate seeds were identical. Besides, the segregation of Chinese and Tunisian pomegranate cultivars into three groups was reveled based on high, low or moderate amino acids contents. Statistically, the differences between organoleptic groups (sweet, sour sweet and sour) were not significant (P?<?0.05). However, the differences between pomegranate cultivars were statistically significant within groups. The separation of cultivars is independent to the organoleptic taste neither the geographical origin.     

The distribution of important sero-complexes of flaviviruses in Malaysia

Tropical Animal Health and Production - Flaviviruses (FVs) are arthropod-borne viruses of medical and veterinary importance. Numerous species of FVs have been isolated from various host; mainly...     

Estimating daily actual evapotranspiration of a rice–wheat rotation system in typical farmland in the Huai River Basin using a two-step model and two one-step models

The objective of this study is to evaluate the performance of three models for estimating daily evapotranspiration(ET) by employing flux observation data from three years(2007, 2008 and 2009) during the growing seasons of winter wheat and rice crops cultivated in a farmland ecosystem(Shouxian County) located in the Huai River Basin(HRB), China. The first model is a two-step model(PM-K_c); the other two are one-step models(e.g., Rana-Katerji(R-K) and advection-aridity(AA)). The results showed that the energy closure degrees of eddy covariance(EC) data during winter wheat and rice-growing seasons were reasonable in the HRB, with values ranging from 0.84 to 0.91 and R2 of approximately 0.80. Daily ET of winter wheat showed a slow decreasing trend followed by a rapid increase, while that of rice presented a decreasing trend after an increase. After calibrating the crop coefficient(K_c), the PM–K_c model performed better than the model using the K_c recommended by the Food and Agricultural Organization(FAO). The calibrated key parameters of the R-K model and AA model showed better universality. After calibration, the simulation performance of the PM-K_c model was satisfactory. Both the R-K model and AA model underestimated the daily ET of winter wheat and rice. Compared with that of the R-K model, the simulation result of the AA model was better, especially in the simulation of daily ET of rice. Overall, this research highlighted the consistency of the PM-K_c model to estimate the water demand for rice and wheat crops in the HRB and in similar climatic regions in the world.