TRAP molecular markers as a system for saturation of the genetic map of durum wheat

Target region amplification polymorphism (TRAP) is a relatively new PCR-based technique that detects large numbers of loci in a single reaction without extensive pre-PCR processing of samples. The aim of this study was to integrate TRAP markers in an EST-derived SSR linkage map of a RIL mapping population from the cross of the durum wheat cultivars Ciccio and Svevo, for a more general purpose of establishing a high-throughput system for genetic map saturation. Primer combinations producing PCR products with at least 4–5 polymorphic bands were selected and analyzed across the mapping population. The PCR reactions produced a total of 2,881 fragments with an average of 52 peaks per reaction. A total of 142 new TRAP markers were mapped and found to be randomly distributed in the genome. The total length of the map was 2,043.0 cM, with an average chromosome length of 145.9 cM. Homoeologous group one had the highest number of TRAP markers (38 loci) and the longest map length (407.9 cM) for a total of 87 markers, while the homoeologous group five had the lowest TRAP marker number (5 loci) and the shortest map length (232.5 cM). The distribution of markers among the seven homoeologous groups was random. The results indicate that TRAP is highly efficient in genetic mapping, generating a large number of markers scattered across the genome. This closes many existing gaps in marker coverage and may join otherwise separate linkage groups.     

The immunology and genetics of resistance of sheep to Teladorsagia circumcincta

Teladorsagia circumcincta is one of the most economically important gastrointestinal nematode parasites of sheep in cool temperate regions, to which sheep show genetically-varying resistance to infection. This is a very common parasite and viable sheep production requires the extensive use of anthelmintic drugs. However, the emergence of drug-resistant parasites has stimulated the search for alternative control strategies to curb production losses. Lambs become infected soon after weaning and begin to control parasite burden within 8–10 weeks of continual infection. This control is an acquired characteristic mediated by the development of parasite-specific antibodies. This paper describes the immunology associated with resistance and susceptibility, focussing on differential T cell activation that regulates the production of specific effector mechanisms. It continues by summarizing the methods used to identify genes that could be exploited as molecular markers of selection for resistance. In particular it focusses on the link between understanding the molecular immunology of infection and the identification of candidate genes for selection.     

Plasma and tissue depletion of florfenicol and florfenicol-amine in chickens

Chickens were used to investigate plasma disposition of florfenicol after single intravenous (i.v.) and oral dose (20 mg kg-1 body weight) and to study residue depletion of florfenicol and its major metabolite florfenicol-amine after multiple oral doses (40 mg kg-1 body weight, daily for 3 days). Plasma and tissue samples were analyzed using a high-performance liquid chromatography (HPLC) method. After i.v. and oral administration, plasma concentration-time curves were best described by a two-compartment open model. The mean [ +/- standard deviation (SD)] elimination half-life (t1/2beta) of florfenicol in plasma was 7.90 +/- 0.48 and 8.34 +/- 0.64 h after i.v. and oral administration, respectively. The maximum plasma concentration was 10.23 +/- 1.67 microg mL-1, and the interval from oral administration until maximal concentration was 0.63 +/- 0.07 h. Oral bioavailability was found to be 87 +/- 16%. Florfenicol was converted to florfenicol-amine. After multiple oral dose (40 mg kg-1 body weight, daily for 3 days), in kidney and liver, concentrations of florfenicol (119.34 +/- 31.81 and 817.34 +/- 91.65 microg kg-1, respectively) and florfenicol-amine (60.67 +/- 13.05 and 48.50 +/- 13.07 microg kg-1, respectively) persisted for 7 days. The prolonged presence of residues of florfenicol and florfenicol-amine in edible tissues can play an important role in human food safety, because the compounds could give rise to a possible health risk. A withdrawal time of 6 days was necessary to ensure that the residues of florfenicol were less than the maximal residue limits or tolerance established by the European Union.     

Solving the spectroscopy interference effects of beta-carotene and lycopene by neural networks

In this study a new computerized approach and linear models (LMs) to solve the UV/vis spectroscopy interference effects of beta-carotene with lycopene analysis by neural networks (NNs) are considered. The data collected (absorbance values) obtained by UV/vis spectrophotometry were transferred into an NN-trained computer for modeling and prediction of output. Such an integrated NN/UV/vis spectroscopy approach is capable of estimating beta-carotene and lycopene concentrations with a mean prediction error 50 times lower than that calculated by the LM/UV/vis spectroscopy approach (without any previous physicochemical knowledge of the process to be modeled).     

Update on the diagnosis of Haemophilus parasuis infection in pigs and novel genotyping methods

Haemophilus parasuis causes Gl?sser's disease as well as a number of other diseases in pigs. The diagnosis of H. parasuis-associated disease is usually established by clinical signs, pathological findings and bacterial isolation but diagnosis is complicated by the existence of non-virulent strains and the early colonisation of the upper respiratory tract of healthy piglets. Moreover, several strains can be found on a farm and even within a single animal so it is important to determine the specific strain that is causing the clinical outbreak. Recently, genotyping methods have been developed with the goal of correlating genotype with the degree of virulence of H. parasuis strains. The association between genotype and virulence in H. parasuis is challenging due to the lack of knowledge of the complete genomic sequence and virulence factors of this bacterium.     

Irrigation effects on elephant grass morphology,and its genotype-dependent responses

This study hypothesised that different elephant grass genotypes respond differently in terms of their morphological development to irrigation. The objective of this study was to evaluate how water availability could affect the morphological development of different genotypes of elephant grass. The treatments consisted of four genotypes of elephant grass [Cenchrus purpureus (Schumach.) Morrone], managed under irrigation or not, during a two-year field trial. The experiment was arranged in a randomised block design in a split-plot, with four replicates per treatment (n = 4). Between the genotypes, two of them were classified as tall-sized (IRI 381 and Elephant B), and two as dwarfs (Taiwan A-146 2.37 and Mott). A three-way interaction between season, irrigation, and genotype affected the variables plant height, stem diameter, number of dead tillers, light interception (LI), and leaf area index (LAI) (p < .05). The morphological development of all genotypes was negatively impacted by the dry season. All genotypes grew taller during the rainy season (p < .05) and had a greater light interception (62%–80%) compared to the dry period (28%–59%). The genotype Mott, showed comparable LI and LAI to the tall-sized genotypes, whilst Taiwan A-146 2.37 was characterized by the lowest values, despite being the genotype with the greatest tiller density (60 tillers m⁻²) (p < .05). The use of irrigation mitigated the negative effects of the dry season on the plants, however, the type and size (tall vs. dwarf) of the elephant grass genotypes defined the extent of the responses to the use of the irrigation during the dry period.