Rice-soil interactions in Vietnamese acid sulphate soils: impacts of submergence depth on soil solution chemistry and yields

Abstract. The aim of this study was to investigate the effects of water submergence depth on radial oxygen loss (ROL), soil solution chemistry and rice growth performance in acid sulphate soils in southern Vietnam. ROL was measured in a solution culture. In a separate pot experiment the impact of water submergence depth on rice growth and soil solution chemistry was studied. Three submergence depths were used in the two experiments (5, 10 and 15 cm). ROL declined with submergence depth and was significantly greater in young roots (with no root hairs) than in older roots. In the pot experiment rice growth and soil solution chemistry were clearly affected by the submergence depth. During the first crop at 5 cm submergence, there was a significantly higher yield and a higher oxidation state (pe+pH) compared to 10 or 15 cm submergence. The Fe concentration was significantly greater at the 5 cm depth compared to the 10 or 15 cm depth. SO₄^2– reduction was delayed at the 5 cm depth. Rice yield was c. 25% less at the 15 cm than at the 5 cm depth. During a second crop, there was a substantial SO₄^2- reduction and H₂S formation and almost no significant effects of submergence depth on either soil solution chemistry or crop yield. In a field experiment with a dry-season rice crop, yield and Fe, Al and SO₄^2– concentrations were higher at a shallow submergence depth than at greater depths in the same field, showing similar depth trends to those found during the first crop in the pot experiment. Farmers should be advised to use a shallow submergence depth and, if possible, avoid deep-rooted rice varieties. A conceptual model is suggested, which summarizes the relationships between ROL and soil solution chemistry.     

Use of high spatial resolution satellite imagery to characterize landscapes at risk for bluetongue

The recent and rapid spread in the Mediterranean Basin of bluetongue, a viral disease of ruminants transmitted by some species of Culicoides (biting midges), highlights the necessity of determining the conditions of its emergence. This study uses high spatial resolution satellite imagery and methods from landscape ecology science to identify environmental parameters related to bluetongue occurrence in Corsica, a French Mediterranean island where the disease occurred for the first time in 2000. A set of environmental variables recorded in the neighborhood of 80 sheep farms were related to case occurrence through a logistic regression model computed within three subsequent buffer distances of 0.5, 1 and 2 km. The results reveal the role of landscape metrics, particularly those characterizing land-use units such as prairies and woodlands, as well as farm type, latitude and sunshine to explain the presence of bluetongue. Internal and external validation both indicate that the best results are obtained with the 1 km buffer size model (area under Receiver Operating Characteristic curve = 0.9 for internal validation and 0.81 for external validation). The results show that high spatial resolution remote sensing (i.e. 10 m pixels) and landscape ecology approaches contribute to improving the understanding of bluetongue epidemiology.     

Assessment of biochemical and antioxidant diversities in a shallot germplasm collection from Vietnam and its surrounding countries

The shallot is considered an important genetic resource for Allium breeding programs because, compared to the bulb onion, the shallot contains higher levels of several functional chemical compounds. However, there may be differences in content, composition and beneficial activity among shallot landraces. This study was carried out to characterize the differences in phenolic, quercetin, sugar, S-alk(en)yl-l-cystein sulfoxide (ACSO), and saponin contents and antioxidant capacities of a shallot germplasm including 31 strains derived from different regions of Vietnam and six other countries. A wide variation was observed in the quantitative analyses of the chemical contents. Shallots with high contents of polyphenols, saponins, and quercetins were found in the south of Vietnam and other low-latitude countries. Meanwhile, those possessing fairly high ACSO and sugar contents were observed in the north of Vietnam. Qualitative analysis of saponins via thin layer chromatography did not show clear variation among shallot strains, but polymorphism was observed between the shallot and other Allium species, such as A. roylei. The principal component analysis could clearly discriminate shallot strains by their geographical origins. All shallot strains showed potent antioxidant activities in a DPPH assay. The highest antioxidant capacity was in the strains possessing relatively high contents of polyphenol, quercetin, and saponin. Significant correlations were found between antioxidant capacity (IC ₅₀ ^?1 ) and four groups of chemical compounds (polyphenols, quercetins, saponins, and ACSOs) (r = 0.40–0.59). A strong correlation was observed between IC ₅₀ ^?1 and quercetin contents (r = 0.59, p < 0.01). The six Fusarium-inoculated shallot strains seemed to be adequately resistant against disease, and the levels of resistance may be related to the saponin content in the bulb tissues.     

Phosphorus release from cattle manure ash as soil amendment in laboratory-scale tests

ABSTRACT

Excessive application of animal manure to farmland leads to phosphorus (P) loss into the surrounding water. Manure is incinerated to convert it to P-rich ash as a slow-release P fertilizer. However, the potential P loss and P availability for plants from cattle manure ash (CMA) have not been fully understood. The aims of this study were to determine the P release mechanism from CMA and to propose appropriate application rates that mitigate P loss and increase available P to soil in Fukushima, where the soil is deficient in nutrients after the replacement of cesium-137-contaminated soil with sandy mountain soil. Different P fractions in CMA were sequentially extracted with H₂O, 0.5 M NaHCO₃, 0.1 M NaOH, and 1 M HCl. Phosphorus contents in different fractions of CMA were in the order of HCl–P > NaHCO₃–P > H₂O–P > NaOH–P. Water-soluble P release of CMA was also determined by kinetic experiments for 120 h. Results showed that total water-soluble P accounted for a maximum of 2.9% of total P in CMA over 120 h due to recalcitrant P compounds formed through incineration. The Fukushima sandy soil amended with CMA at three application rates, 94, 157, and 314 mg P kg^?1 (corresponding to 300, 500, 1000 kg P₂O₅ ha^?1) was incubated for 56 days. Cattle manure compost and KH₂PO₄ were applied at 157 mg P kg^?1 for comparison. Phosphorus release in water and CaCl₂ solution from ash-amended soil was significantly lower than those from compost and KH₂PO₄-amended soil at the same P application rate of 157 mg P kg^?1 (p < 0.05). Available P in ash-amended soil, determined by Fe-oxide impregnated strips, was not significantly different from those in compost-amended soil after day 7 and KH₂PO₄-amended soil on day 56 at the same P application rate. Thus, CMA reduces P losses from soil to the surrounding water while it increases P availability for plants. In comparison of different rates of CMA, P release in water or CaCl₂ was significantly greater at 314 mg P kg^?1 than at 94 or 157 mg P kg^?1, while the percentage of available P to total P was the lowest at the highest application rate (p < 0.05), suggesting that the best application rates were 94 and 157 mg P kg^?1 in this experiment.     

Simultaneous removal of Cu and PAHs from dredged sediments using flotation

Purpose

This study addresses the feasibility of a flotation technique, using a lab-scale flotation cell, to simultaneously remove both metals and polyaromatic hydrocarbons (PAHs) from fine sediment fractions (<250 μm) that are potentially contaminated with copper (Cu).

Materials and methods

A multiple flotation process with three consecutive flotation stages was performed on three sediments (13S, 14B, and 24A) with different particle size distributions, Cu and PAH concentrations, and organic matter contents.

Results and discussion

Flotations performed under selected conditions allowed for significant removal of both Cu (61–70 %) and PAHs (75–83 %) with acceptable froth recoveries of approximately 23–29 %. Removal rates for arsenic, lead, and zinc were 48–61, 40–48, and 32–36 %, respectively. Flotation selectivity of Cu was greatly influenced by the contents of fine particles and organic matter of the sediments. The maximum flotation selectivity was obtained for the 53–125-μm size fraction. The high flotation selectivity of Cu (2.5–3.2) and PAHs (3.0–3.6) demonstrated the feasibility of flotation to treat soils or sediments containing both organic and inorganic pollutants.

Conclusions

Overall, the flotation results showed a high selectivity for both Cu and PAHs and demonstrated the feasibility of flotation to treat media contaminated with organic and inorganic contaminants.     

Complete genome sequences and properties of Spartina mottle virus isolates from hybrid Bermuda grass (Cynodon dactylon × Cynodon transvaalensis)

Full genome sequences are presented for two isolates of Spartina mottle virus (SpMoV) from two accessions of the hybrid turf grass Cynodon dactylon × C. transvaalensis (Bermuda grass, green couch), originally from the USA but detected during post-entry quarantine in Australia. Both isolates had a genome of 9,346 nucleotides, encoding a single polyprotein of 3,029 amino acids and predicted to be cleaved into 10 mature proteins. Phylogenetic analysis strongly supported placement in a new genus within the family Potyviridae. The isolates possess 715–780 × 11–12 nm flexuous virions and produce cylindrical (pinwheel) inclusions in infected cells. They were mechanically transmitted to several species in the Poaceae including Zea mays (maize, sweet corn), Chloris gayana (Rhodes grass), and Echinochloa colona (awnless barnyard grass).     

Assessment of genetic diversity and population structure of Vietnamese indigenous cattle populations by microsatellites

Cattle play a very important role in agriculture and food security in Vietnam. A high level of cattle diversity exists and serves different needs of Vietnamese cattle keepers but has not yet been molecularly characterized. This study evaluates the genetic diversity and structure of Vietnamese indigenous cattle populations, using microsatellite markers. A total of 410 individuals from six indigenous cattle populations and an exotic breed was characterized using 27 microsatellite markers A total of 362 alleles was detected and the number of alleles per locus ranged from 8 (INRA005 and ILSTS005) to 17 (ETH185). The level of gene diversity was high indicated by a mean expected heterozygosity (He) across populations and loci of 0.73. Level of inbreeding (mean F_IS=0.05) and genetic differentiation (mean F_ST=0.04) was moderate. The phylogenetic tree based on Reynolds genetic distance reflected geographic distances. Structure analysis indicated five homogeneous clusters. The Brahman, Lang Son, Ha Giang and U Dau Riu cattle were assigned to independent clusters while Nghe An, Thanh Hoa and Phu Yen cattle were grouped in a single cluster. We conclude that Vietnamese indigenous cattle have high levels of genetic diversity and distinct genetic structures. Based on these results, we recommend that for conservation homogenous populations (Nghe An, Thanh Hoa and Phu Yen) can be grouped to reduce costs and U Dau Riu, Lang Son and Ha Giang populations should be conserved separately to avoid loss of genetic diversity.     

Structure of Fucoidan from Brown Seaweed Turbinaria ornata as Studied by Electrospray Ionization Mass Spectrometry (ESIMS) and Small Angle X-ray Scattering (SAXS) Techniques

The purpose of this study is to elucidate both the chemical and conformational structure of an unfractionated fucoidan extracted from brown seaweed Turbinaria ornata collected at Nha-trang bay, Vietnam. Electrospray ionization mass spectrometry (ESI-MS) was used for determining the chemical structure and small angle X-ray scattering (SAXS) provided conformational of the structure at the molecular level. The results showed that the fucoidan has a sulfate content of 25.6% and is mainly composed of fucose and galactose residues (Fuc:Gal ≈ 3:1). ESIMS analysis suggested that the fucoidan has a backbone of 3-linked α-l-Fucp residues with branches, →4)-Galp(1→ at C-4 of the fucan chain. Sulfate groups are attached mostly at C-2 and sometimes at C-4 of both fucose and galactose residues. A molecular model of the fucoidan was built based on obtained chemical structure and scattering curves estimated from molecular model and observed SAXS measurement were fitted. The results indicated that fucoidan under study has a rod-like bulky chain conformation.     

Effects of low temperatures on pupal survival of the stone leek leafminer Liriomyza chinensis (Diptera: Agromyzidae)

Abstract

The cold-hardiness of Liriomyza chinensis pupae was measured in the laboratory by observing pupal mortality at low temperatures. Pupal mortality increased with decreasing temperature and with extended cold exposure time. No recently pupated pupae (6 h) were able to survive after 16 days of chilling at 0, 2.5 and 5°C, but 42.9% survival was observed at 10°C. Pupae at different developmental stages showed significant difference in mortality, with very low levels of mortality observed for older pupae (4 and 7 days) after exposure to 0°C for 16 days. The lethal time for 50% survival (LT₅₀) increased with increasing age of pupae. LT₅₀ for 4-day-old pupae exposed to 0°C was 52.1 days. Analysis of mean temperatures at several localities indicated that L. chinensis is able to overwinter outdoors in southern regions, but is unable to overwinter in open fields in northern regions of Japan, suggesting that overwintering in these regions would only occur in greenhouses.