Analysis of ITS of the rDNA to infer phylogenetic relationships among Vietnamese Citrus accessions

This study focused on clarifying phylogenetic relationships among Citrus accessions from Vietnam. Our phylogenetic analysis based on nucleotide sequences from the ITS of the ribosomal DNA included 69 accessions belonging to Citrus and related (sub)genera. Maximum parsimony and Bayesian analysis confirmed a clear separation of the three ‘true’ Citrus species (C. medica, C. maxima and C. reticulata). Confirming recent taxonomic revisions, Fortunella, Poncirus trifoliata and Citrus hystrix are clustered among the accessions of subgenus Citrus. C. × sinensis accessions revealed a close evolutionary relationship to either C. maxima or C. reticulata, thereby confirming their involvement in its hybrid origin. Also, some other hybrid taxa and their proposed parental species were investigated and their origin could in some cases be confirmed using the ITS sequence data.     

The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease

Whole-genome sequencing of the protozoan pathogen Trypanosoma cruzi revealed that the diploid genome contains a predicted 22,570 proteins encoded by genes, of which 12,570 represent allelic pairs. Over 50% of the genome consists of repeated sequences, such as retrotransposons and genes for large families of surface molecules, which include trans-sialidases, mucins, gp63s, and a large novel family (>1300 copies) of mucin-associated surface protein (MASP) genes. Analyses of the T. cruzi, T. brucei, and Leishmania major (Tritryp) genomes imply differences from other eukaryotes in DNA repair and initiation of replication and reflect their unusual mitochondrial DNA. Although the Tritryp lack several classes of signaling molecules, their kinomes contain a large and diverse set of protein kinases and phosphatases; their size and diversity imply previously unknown interactions and regulatory processes, which may be targets for intervention.     

Evaluation of genetic richness among Vietnamese native pig breeds using microsatellite markers

We have elucidated genetic relationships of Vietnamese native pigs (VNP) using preliminarily collected samples by a single‐nucleotide polymorphism (SNP) array. In order to confirm our previous results and compare with the results of a previous study using microsatellite (MS) markers, we aimed to characterize genetic diversity and population structure in wider varieties (24 breeds from 21 Provinces) of VNP across the country using 20 polymorphic MS markers recommended by ISAG/FAO (International Society for Animal Genetics/Food and Agriculture Organization) for diversity study. In this study, we collected 1,136 DNA samples of the VNPs and three exotic breeds. Our results revealed that the average number of alleles and allelic richness across the loci in VNPs were 10.0 and 7.6, which were higher than those of exotic breeds. Genomic components among VNPs were subjected to the sampling locations. Interestingly, Co Binh Thuan showed remarkable genetic feature compared to the other VNPs, because the habitation of Co Binh Thuan was relatively far from the other breeds. The results of this study provided useful information for exploitation, conservation, and development trends of the VNP breeds. More recently, African swine fever caused significant damage to most of the VNP populations. Therefore, our findings will help a reconstruction scheme of the VNP genetic resources.     

Hard choices: Making trade-offs between biodiversity conservation and human well-being

Win–win solutions that both conserve biodiversity and promote human well-being are difficult to realize. Trade-offs and the hard choices they entail are the norm. Since 2008, the Advancing Conservation in a Social Context (ACSC) research initiative has been investigating the complex trade-offs that exist between human well-being and biodiversity conservation goals, and between conservation and other economic, political and social agendas across multiple scales. Resolving trade-offs is difficult because social problems – of which conservation is one – can be perceived and understood in a variety of disparate ways, influenced (in part at least) by how people are raised and educated, their life experiences, and the options they have faced. Pre-existing assumptions about the “right” approach to conservation often obscure important differences in both power and understanding, and can limit the success of policy and programmatic interventions. The new conservation debate challenges conservationists to be explicit about losses, costs, and hard choices so they can be openly discussed and honestly negotiated. Not to do so can lead to unrealized expectations, and ultimately to unresolved conflict. This paper explores the background and limitations of win–win approaches to conservation and human well-being, discusses the prospect of approaching conservation challenges in terms of trade-offs and hard choices, and presents a set of guiding principles that can serve to orient strategic analysis and communication regarding trade-offs.     

The combined mode of action of fipronil and amitraz on the motility of Rhipicephalus sanguineus

The motility of adult Rhipicephalus sanguineus was evaluated subsequent to treatments of amitraz, fipronil and the combination of fipronil plus amitraz against a vehicle control in a Petri dish assay using the LemnaTec Scanalyzer Imaging System. The assay was run using a fixed dilution of amitraz (0.32μg/cm(2)); serial dilutions of fipronil (1.3, 0.33, 0.08, 0.02, or 0.005μg/cm(2)); and the same serial dilutions of fipronil in combination with the fixed dilution of amitraz. Measurement of motility was made of unstimulated ticks and then after stimulation at 1, 4, 18-22, and 24h post exposure (hpe) of the Petri dishes. For the unstimulated ticks, there was no difference in motility between the amitraz treatment group and the fipronil plus amitraz treatment group at the early time points. However, these two treatment groups had significantly higher motility than the solvent control and fipronil treatment groups. The unstimulated ticks in the amitraz treatment group had significantly higher motility than the fipronil plus amitraz treatment group at the later time points. Measurements after stimulation demonstrated there was no difference in motility between the amitraz treatment group and the fipronil plus amitraz treatment group at the early time points. By 18 hpe, the fipronil plus amitraz treatment group had significantly lower motility than all other treatment groups and at 21-22 and 24 hpe the other treatment groups did not differ from the control group. The action could be divided in two phases in the combination experiment: phase 1: an early increase in motility due to amitraz is identified in both amitraz alone or fipronil plus amitraz groups; phase 2: the combination of fipronil plus amitraz caused a significantly greater reduction in motility, suggesting mortality of the ticks, compared to fipronil or amitraz alone. These results demonstrate a synergism resulting from the combination of fipronil plus amitraz.     

Two types of somatostatin receptors differentiated by cyclic somatostatin analogs

Somatostatin receptors in rat brain, pituitary, and pancreas were labeled with two radioiodinated analogs of somatostatins 14 and 28. Two cyclic analogs of somatostatin, SMS201-995 and cyclo(Ala-Cys-Phe-D-Trp-Lys-Thr-Cys), showed biphasic displacement of binding to somatostatin receptors by these radioligands. In contrast, all other somatostatin analogs, including somatostatin-14, competed for the receptor sites with monophasic displacement of radioligand receptor binding. Thus two types of somatostatin receptors were identified. It was found that the pituitary and pancreas have predominantly one type of somatostatin receptor whereas the brain has both, and that different regions of the brain have various proportions of the two types. These findings suggest methods to characterize other types of somatostatin receptors subserving somatostatin's diverse physiological functions, including a potential role in cognitive function and extrapyramidal motor system control.     

Reduced numbers of somatostatin receptors in the cerebral cortex in Alzheimer's disease

Somatostatin receptor concentrations were measured in patients with Alzheimer's disease and controls. In the frontal cortex (Brodmann areas 6, 9, and 10) and temporal cortex (Brodmann area 21), the concentrations of somatostatin in receptors in the patients were reduced to approximately 50 percent of control values. A 40 percent reduction was seen in the hippocampus, while no significant changes were found in the cingulate cortex, postcentral gyrus, temporal pole, and superior temporal gyrus. Scatchard analysis showed a reduction in receptor number rather than a change in affinity. Somatostatin-like immunoreactivity was significantly reduced in both the frontal and temporal cortex. Somatostatin-like immunoreactivity was linearly related to somatostatin-receptor binding in the cortices of Alzheimer's patients. These findings may reflect degeneration of postsynaptic neurons or cortical afferents in the patients' cerebral cortices. Alternatively, decreased somatostatin-like immunoreactivity in Alzheimer's disease might indicate increased release of somatostatin and down regulation of postsynaptic receptors.     

Overriding imatinib resistance with a novel ABL kinase inhibitor

Resistance to the ABL kinase inhibitor imatinib (STI571 or Gleevec) in chronic myeloid leukemia (CML) occurs through selection for tumor cells harboring BCR-ABL kinase domain point mutations that interfere with drug binding. Crystallographic studies predict that most imatinib-resistant mutants should remain sensitive to inhibitors that bind ABL with less stringent conformational requirements. BMS-354825 is an orally bioavailable ABL kinase inhibitor with two-log increased potency relative to imatinib that retains activity against 14 of 15 imatinib-resistant BCR-ABL mutants. BMS-354825 prolongs survival of mice with BCR-ABL-driven disease and inhibits proliferation of BCR-ABL-positive bone marrow progenitor cells from patients with imatinib-sensitive and imatinib-resistant CML. These data illustrate how molecular insight into kinase inhibitor resistance can guide the design of second-generation targeted therapies.     

A simple irrigation scheduling approach for pecans

Pecans are a major crop in New Mexico's Lower Rio Grande Valley (LRGV). It is estimated that New Mexico is responsible for about 21% of the world's pecan production (Lillywhite et al., 2007). Currently, approximately 12,000 ha of pecan orchards at various stages of growth consume 45% of the area's irrigation water. Pecan evapotranspiration (ET) varies with age, canopy cover, soil type, crop density and method of water management. Intense competition for the LRGV's limited water supply has created a serious need for better water management through improved irrigation scheduling. Annual pecan ET ranges from as low as 500 mm to as high as 1400 mm. Diversity of the pecan crop coefficient (K_c) and ET makes the task of irrigation scheduling for this crop very complicated. Using remote sensing technology and field ET measurements, a simple relationship was developed to relate crop coefficient and ET to canopy cover. This relationship is then used in combination with climate data to calculate daily and weekly water requirements for each orchard. The difference between annual ET values estimated from canopy cover and values measured with an eddy covariance flux tower ranged from 2 to 5%. The average ratio of estimated monthly ET values over measured ET values was 1.03 with the standard error of the estimate ranging from 10 to 20 mm/month. This methodology provides a simple tool that farmers can use to schedule irrigation of pecan orchards. Even though the methodology was developed for irrigation scheduling in the LRGV, it can be used in other locations by transferring the reference crop coefficients using K_c-GDD relationships.     

Evaluation of Soil Organic Matter Content under Topographic Influences in Agroforestry Ecosystems: a Study in Central Vietnam

Eurasian Soil Science - We investigate the key predictors that influence the soil organic matter (SOM) content in higher altitude plantations. This is to study the potential of carbon sequestration...