Eco-geographical distribution of <Emphasis Type="Italic">Lactuca aculeata</Emphasis> natural populations in northeastern Israel

The wild lettuce, Lactuca aculeata Boiss. et Ky., is closely related and fully interfertile with cultivated lettuce, Lactuca sativa L. Altogether, 155 accessions of this wild species, which is rare conserved within the world’s germplasm collections, were collected from 12 localities throughout northeastern Israel. Ten of these localities represent different sites across the Golan Heights, while two, high-density populations were suprisingly found at the Hula Plain (first report of this species in this region). Lactuca aculeata was recorded at various elevations (222–968 m a.s.l.) and habitats. The taxonomic status of 30 L. aculeata accessions was morphologically validated during ex situ seed regeneration of 31 random accessions representing all 12 localities. Characterization of 12 traits showed that the Israeli populations of L. aculeata do not exhibit broad morphological variability, but more great levels of variation were obtained for developmental traits. Relatively little variability was observed in the morphology of cauline leaves or in the distribution of anthocyanin pigmentation in bracteae. In two cases, L. aculeata plants lacked trichomes in the inflorescence, a typical feature in the majority of plants. These unique collections of wild lettuce may carry novel sources of genetic variation for a wide range of traits and, thus, should be of interest for careful evaluation and exploitation in lettuce breeding.     

The genetic diversity associated with seed proteins in a collection of Spanish underground vetches (<Emphasis Type="Italic">Vicia sativa</Emphasis> L. subsp. <Emphasis Type="Italic">amphicarpa</Emphasis> (Dorthes) Asch. et Graebn.)

The characterization of plant genetic resources is the first step towards improving their use. The Spanish Plant Genetic Resources Centre, which belongs to the National Institute for Agricultural and Food Technology Research (CRF-INIA), conserves accessions of wild underground vetches collected in Spain. In the present work, 26 underground vetch accessions were characterized in terms of their seed storage proteins (separated by SDS-PAGE) as a means of assessing the genetic variation of these plants and their agronomic value. Vicia sativa cv. Vereda was used as control. A total of 54 bands were detected, of which 49 were polymorphic. Fifty eight different electrophoretic patterns were observed in total. Protein bands were scored in terms of their presence (1) or absence (0) for all the seeds studied, and two matrices constructed, one with all the bands present in each accession, the other with the different patterns for each accession. Dendrograms based on the Jaccard similarity index and the UPGMA clustering method were produced from these matrices, and the degree of genetic variation between and within accessions was calculated. The groups obtained were compared with the chromosome number for each accession. The results reflect the great diversity of underground vetch seed storage proteins. The aerial and underground seeds of 16 accessions were then analysed separately. In some cases, the aerial and underground flowers of the same plant produced different proteins.     

A Calibration Experiment in a Longitudinal Survey With Errors-in-Variables

The National Resources Inventory (NRI) is a large-scale longitudinal survey conducted to assess trends and conditions of nonfederal land. A key NRI estimate is year-to-year change in acres of developed land, where developed land includes roads and urban areas. In 2003, a digital data collection procedure was implemented replacing a map overlay. Data from an NRI calibration experiment are used to estimate the relationship between data collected under the old and new protocols. A measurement error model is postulated for the relationship, where duplicate measurements are used to estimate the error variance of the new procedure. If any significant discrepancy is detected between new and old measures, some parameters that govern the algorithm for the new protocol can be changed to alter the relationship. Parameters were initially calibrated so overall averages nearly match for the new and old protocols. Analyses on the data after initial parameter calibration suggest that a line with an intercept of 0 and a slope of 1 is an acceptable representation for the relationship between the two determinations. Estimation of the measurement error variances as functions of the proportion of developed land are also given.     

Distributions of soil phosphorus in China’s densely populated village landscapes

Purpose  

Village landscapes, which integrate small-scale agriculture with housing, forestry and a host of other land use practices, cover more than 2 × 10⁶ km² across China. Village lands tend to be managed at very fine spatial scales (≤30 m), with managers altering soil fertility and even terrain by terracing, irrigation, fertilizing, and other land use practices. Under these conditions, accumulation of excess phosphorous in soils has become important contributor to eutrophication of surface waters across China’s densely populated village landscapes. The aim of this study was to investigate relationships between fine-scale patterns of agricultural management and soil total phosphorus (STP) within China’s village landscapes.     

Fungal degradation of chlorpyrifos by <Emphasis Type="Italic">Acremonium</Emphasis> sp. strain (GFRC-1) isolated from a laboratory-enriched red agricultural soil

The organophosphorus insecticide, chlorpyrifos, has been widely applied in agriculture; in veterinary, against household pests; and in subterranean termite control. Due to its slow rate of degradation in soil, it can persist for extended periods in soil with a significant threat to environment and public health. The mixed and pure fungi were isolated from three soils by enrichment technique. The enriched mixed fungal cultures were capable of biodegrading chlorpyrifos (300 mg L⁻¹) when cultivated in Czapek Dox medium. The identified pure fungal strain, Acremonium sp., utilized chlorpyrifos as a source of carbon and nitrogen. The highest chlorpyrifos degradation (83.9%) by Acremonium sp. strain GFRC-1 was found when cultivated in the nutrient medium with full nutrients. Desdiethyl chlorpyrifos was detected as a major biodegradation product of chlorpyrifos. The isolated fungal strain will be used for developing bioremediation strategy for chlorpyrifos-polluted soils.     

The versatile,changing, and advancing roles of fish in sediment toxicity assessment—a review

Purpose  

Sediments serve as integral and dynamic parts of our aquatic systems. Within the last 15 to 20 years, however, the scientific community has begun noticing deterioration of sediment quality at an alarming rate worldwide. Sediments are now harboring hazardous pollutants that can directly influence water quality, thereby creating very stressful conditions for aquatic life. As a consequence, global efforts were initiated in the early 1970s, to find ways to assess sediment quality. Because of their obvious ecological and economic significance, fish have remained a major taxonomic group for appraising the general quality of aquatic systems. However, for sediment risk assessment, fish have lagged behind invertebrates due to their mobility and generally, pelagic lifestyle. To our knowledge, this is the first paper that comprehensively presents and reviews the versatile role of fish in assessing the state of health of aquatic sediments.     

Soil pH controls nitrification and carbon substrate utilization more than urea or charcoal in some highly acidic soils

Understanding the mechanism and key controlling factors of nitrification in highly acidic soils is important from both ecological and environmental perspectives. Many acid soils are also characterized by vegetation that produces polyphenolic and terpene compounds that inhibit microbial activity. We investigated the potentially ameliorative effects of lime, charcoal, and urea additions on soil nitrification and carbon substrate utilization (using the MicroResp method). Four soils were studied from widely different environments but with similar pH and inputs of phytochemicals to determine the relative effects of these potentially controlling factors. The addition of charcoal had no significant effect on net nitrification, but charcoal significantly increased soil basal respiration and altered C substrate utilization in the two Scottish soils. Urea greatly increased nitrification in both the Chinese soils, but there was no effect of urea on nitrification in the two Scottish soils. Lime application increased nitrification in all the soils except for the Chinese mixed forest soil. Multivariate analysis of the C source utilization data revealed that lime altered C substrate utilization more than urea or charcoal in these highly acidic soils. Our results suggest that acid-tolerant nitrifiers do exist in these soils and have potential for high activity, and pH (lime addition) and N-substrate (urea) most often increased nitrification. However, no single factor controlled nitrification in every soil, suggesting an interaction between abiotic and nitrifier community composition as a result of land use and soil type interactions.     

N<Subscript>2</Subscript>-fixation along a gradient of long-term disturbance in tropical mangroves bordering the gulf of Mexico

Microbial processes are key elements in determining the productivity of mangroves, and reductions in these processes reflect the loss of microbial biodiversity and function due to fabricated disturbances. Because nitrogen is a major limiting nutrient for the productivity of these ecosystems, the goal of this study was to determine profiles of inorganic nitrogen combined with several environmental parameters, all in relation to the degree of long-term hydraulic impairment of a tropical, monospecific black mangrove (Avicennia germinans) forest that showed degradation ranging from total loss of mangrove cover to no disturbance. N₂-fixation, oxygen levels, and nitrite contents decreased significantly with the severity of the disturbance, and almost null levels were reached in the completely degraded zone, whereas salinity achieved very high values. Concomitantly, total N, ammonium, and P contents and ammonia volatilization increased significantly. Pore-water temperature and pH increased moderately. Other soil physical properties (sand, silt, clay, organic matter, and total C), which varied among the sampling sites, were not correlated with the level of disturbance. Principal component analyses, including environmental and biological parameters, suggested that the most significant finding was the considerable loss of N₂-fixation with increasing impairment, which was concomitant with significant increases in volatilization of ammonia and salinity. The results show that microbial N-cycling processes are highly sensitive to salinity and to man-made disturbances that modify the water level and flow.     

Complete chloroplast genome sequence of rapeseed (<Emphasis Type="Italic">Brassica napus</Emphasis> L.) and its evolutionary implications

The complete nucleotide sequence of the rapeseed (Brassica napus L.) chloroplast genome (cpDNA) was determined. The 152,860 bp cpDNA contained a pair of 26,035 bp inverted repeat regions (IR), which are separated by small and large single copy regions (SSC and LSC) of 83,030 and 17,760 bp, respectively. The major portion (56.4%) of the B. napus cpDNA consists of gene coding regions, while intergenic spacers make up 43.6% of the complete genome. The average AT content of the B. napus cpDNA is 63.7% and for the LSC, SSC and IR region is 65.9, 70.8 and 57.7%, respectively. Fifteen genes contained one intron, while three genes had two introns. In total, 86 simple sequence repeats were identified. The detailed comparison of the B. napus with one of its putative parents, B. rapa L. cpDNA indicated that the two species were highly similar. The entire gene pool and relative positions of 113 individual genes were identical to those of B. rapa cpDNA. The sequence divergence analysis of B. napus and B. rapa showed only 0.133% in the coding regions, 0.275% in the intron regions, and 0.348% in the intergenic spacer regions. The phylogenies based on 61 protein coding genes from 48 cpDNA sequences provided strong support for monophyly of many major classes of angiosperms and provided support that Amborella could be a sister to all other angiosperms. Our analysis also supported that B. napus is the closest species to B. rapa and B. rapa could be the mathernal parent of B. napus cv. zy036.