Seasonal contribution of C3 and C4 species to ecosystem respiration and photosynthesis estimated from isotopic measurements of atmospheric CO2 at a grassland in Japan

Measurements of δ¹³C in atmospheric CO₂ and plant samples were made in 2003, along with CO₂ flux measurements, at a grassland site in Tsukuba in central Japan. The objective of the study was to obtain estimates of relative seasonal contributions of C₃ and C₄ plants to the net CO₂ flux over a C₃/C₄ grassland area influenced by the Asian monsoon. C₄ contribution to the ecosystem respiration (f_4R) increased from June to September, and then became constant at 63–67% through October and November. The seasonal variation in f_4R reflected the biomass composition of C₃ and C₄ plants at the measurement site. The seasonal C₄ contribution to photosynthesis (f_4P) was significantly different from its contribution to f_4R in May (8%) while it showed similar values to f_4R after June. The seasonal variations in f_4R and f_4P reflect the biomass composition ratio. Such seasonal transition from C₃ to C₄ of relative contribution to the carbon flux is similar to that observed in humid prairie ecosystems, while it is different from that in dry prairie ecosystems where the contribution of C₃ plants is lower and the seasonal maximum of the C₄-plant contribution occurs earlier compared to the humid prairie ecosystems.     

Genetic parameters for measures of energetic efficiency of bulls and their relationships with carcass traits of field progeny in Japanese Black cattle

Records on 514 bulls from the sire population born from 1978 to 2004, and on 22,099 of their field progeny born from 1997 to 2003 with available pedigree information (total number = 124,458) were used to estimate genetic parameters for feed intake and energy efficiency traits of bulls and their relationships with carcass traits of field progeny. Feed intake and energetic efficiency traits were daily feed intake, TDN intake, feed conversion ratio (FCR), TDN conversion ratio (TDNCR), residual feed intake (RFI), partial efficiency of growth, relative growth rate, and Kleiber ratio. Progeny carcass traits were carcass weight (CWT), yield estimate, ribeye area, rib thickness, subcutaneous fat thickness (SFT), marbling score (MSR), meat color standard (MCS), fat color standard (FCS), and meat quality grade. All measures of feed intake and energetic efficiency were moderately heritable (ranged from 0.24 to 0.49), except for partial efficiency of growth and relative growth rate, which were high (0.58) and low (0.14), respectively. The phenotypic and genetic correlations between FCR and TDNCR were >or=0.93. Selection for Kleiber ratio will improve all of the energetic efficiency traits with no effect on feed intake measures (daily feed intake and TDN intake). The genetic correlations of FCR, TDNCR, and RFI of bulls with most of the carcass traits of their field progeny were favorable (ranged from -0.24 to -0.72), except with fat color standard (no correlation), MCS, and SFT. Positive (unfavorable) genetic correlations of MCS with FCR, TDNCR, and RFI (0.79, 0.70, and 0.51, respectively) were found. The SFT was negatively genetically correlated with FCR and TDNCR (-0.32 and -0.20, respectively); however, the genetic correlation between RFI and SFT was not significantly different from zero (r(g) = -0.08 +/- 0.12). Favorable correlated responses in CWT, yield estimate, ribeye area, rib thickness, MSR, and meat quality grade would be predicted for selection against any measure of energetic efficiency. The correlated responses in CWT and MSR of progeny were greater for selection against RFI than for selection against any other energetic efficiency trait. Results of this study indicate that RFI should be preferred over other measures of energetic efficiency to include in selection programs.     

Density estimation of the giant jellyfish Nemopilema nomurai around Japan using an alternative modified detection function for left truncation in a line transect survey

Information on the distribution and bloom scale of the giant jellyfish Nemopilema nomurai is necessary to understand the impact on fisheries. In October 2009, we had an opportunity for visual counting of N. nomurai around Japan from a research/training vessel. To take into account possibly severe missed detection of N. nomurai in the close vicinity of the vessel, detection functions were modified by introducing an additional parameter δ expressing the proportion of detectable N. nomurai within a threshold perpendicular distance. Some covariate effects in the detection process were also investigated. The δ-modified hazard-rate detection function with δ variation parameter of jellyfish body size was chosen as the best-fit one by AIC model selection. The results suggested that a higher proportion (>30 % or more) of N. nomurai were undetected in the vicinity of vessel. The δ-modified model had an advantage of no loss of left-truncated data and provided better estimation of density with the smaller coefficient of variation than the conventional left truncation approach. It is applicable to other line transect surveys, e.g. aerial surveys. High densities of N. nomurai were found in the central part of the Sea of Japan and off Iwate Prefecture.     

Metabolite profiling of shoot extract,root extract,and root exudate of rice under nitrogen and phosphorus deficiency

ABSTRACT

Root exudate is derived from plant metabolites and its composition is affected by plant nutrient status. A deficiency of mineral nutrients, such as nitrogen (N) and phosphorus (P), strongly affects the type and amount of plant metabolites. We applied a metabolite profiling technique to investigate root exudates of rice plants under N and P deficiency. Oryza sativa was grown in culture solution containing two N levels (0 and 60 mg N L^?1) or two P levels (0 and 8 mg P L^?1). Shoot extracts, root extracts, and root exudates were obtained from the rice plants 5 and 15 days after transplanting and their metabolites were determined by capillary electrophoresis/time-of-flight mass spectrometry. Shoot N concentration and dry weight of rice plants grown at ?N level were lower than those of plants grown at +N level. Shoot P concentration and dry weight of rice plants grown at ?P level were lower than those of plants grown at +P level. One hundred and thirty-two, 127, and 98 metabolites were identified in shoot extracts, root extracts, and root exudates, respectively, at the two N levels. One hundred and thirty-two, 128, and 99 metabolites were identified in shoot extracts, root extracts, and root exudates, respectively, at the two P levels. Seventy-seven percent of the metabolites were exuded to the rhizosphere. The concentrations of betaine, gamma-aminobutyric acid, and glutarate in root exudates were higher at both ?N and ?P levels than at their respective high levels. The concentration of spermidine in root exudates was lower at both ?N and ?P levels than at their respective high levels. The concentrations of the other metabolites in root exudates were affected differently by plant N or P status. These results suggest that rice roots actively release many metabolites in response to N and P deficiency.     

基于烧失量指数评估滨海沉积物中有机质特征

Understanding organic matter characteristics(e.g., amount and state) of sediments is necessary for evaluating both the sediment and water environments; however, methods that have been proposed to investigate these characteristics are relatively expensive. This study attempted to evaluate the organic matter characteristics of littoral sediments by employing solely the loss on ignition(LOI)method, which is the most economical and accessible method in developing countries. Different types of sediments were first oven dried at 100℃ and then continuously burned at 200, 300, 400, 500, and 600℃ for 4 h at each temperature. The mass LOI at each temperature was calculated and compared with the 100℃ oven-dried weight. Our results suggested that the mass LOI across the temperature range of 200–300℃(LOI_(200-300)):mass LOI at 600℃(LOI_(600)) ratio(LOI_(200-300)/LOI_(600)) could represent different types of sediments as well as the organic matter:organic C ratio. Compared with the sediments unaffected by wastewater, the sediments that were more influenced by the inflow of domestic wastewater had a higher LOI_(200-300)/LOI_(600). Interestingly, LOI_(200-300)/LOI_(600) could also represent changes in the organic matter characteristics as a function of organic matter decomposition in sediments. In conclusion, the organic matter characteristics of littoral sediments could be evaluated using solely the LOI method, particularly with LOI_(200-300)/LOI_(600).     

Growth variability of Pacific saury Cololabis saira larvae under contrasting environments across the Kuroshio axis: survival potential of minority versus majority

Growth variability was examined for Pacific saury Cololabis saira larvae under contrasting environments across the Kuroshio axis, based on samples collected during the winter spawning season in 2013 and 2014. The growth rate index (residual of the otolith marginal 3‐day mean increment width from the linear regression on knob length) of larvae was compared among three areas: the inshore side of the Kuroshio axis, the Kuroshio axis, and the offshore side of the Kuroshio axis in relation to sea surface temperature (SST), salinity (SSS) and chlorophyll‐a (CHL) concentration. The larvae were more densely distributed in the Kuroshio axis and offshore areas of higher temperature and salinity and lower chlorophyll‐a concentration than in the inshore areas of lower temperature and salinity and higher chlorophyll‐a concentration. No marked differences in the growth rate index were found among the three areas, even though the larvae in the inshore areas showed slightly higher growth rates in 2013. Despite the broad ranges of environmental factors, no clear relationship between the growth rate index and any environmental factor was detected. The survival potential of Pacific saury larvae was considered to be at least comparable under contrasting environments across the Kuroshio axis. Such a geographical homogeneity is concluded to be attributable to compensable effects of physical and biological factors. We hypothesize that the minority under physically‐unfavorable but biologically‐favorable conditions on the inshore side of the Kuroshio axis could survive equally well as the majority under physically‐favorable but biologically‐unfavorable conditions around the Kuroshio axis and on the offshore side of the Kuroshio axis.     

Comparison of the immunosuppressive effects of dexamethasone, flunixin meglumine and meloxicam on the in vitro response of calf peripheral blood mononuclear cells

This study compared the immunosuppressive effects of dexamethasone (DEX), flunixin meglumine (FLU) and meloxicam (MEL) on the peripheral blood mononuclear cells (PBMCs) of seven healthy Holstein calves in vitro. DEX significantly inhibited lymphocyte proliferation and expression of interferon (IFN)-γ, interleukin (IL)-2 and IL-4 messenger RNA (mRNA) in comparison with FLU and MEL. FLU and MEL dose-dependently inhibited lymphocyte proliferation, but did not significantly reduce mRNA expression. Our in vitro study indicates that steroidal anti-inflammatory drugs (SAIDs) as well as nonsteroidal anti-inflammatory drugs (NSAIDs) have immunosuppressive effects on calf PBMCs. These findings are important for assessing the indications and complications of NSAIDs in calves.     

Molecular phylogenetic analysis of Theileria species detected from Japanese serows (Capricornis crispus) in Iwate Prefecture, Japan

In the present study, we tried to detect DNA for ribosomal RNA genes of piroplasma parasites from the liver or blood of 43 Japanese serows (Capricornis crispus) in Iwate Prefecture of Japan by polymerase chain reaction. Approximately 500-bp amplicons were obtained in 35 (81.4%) of the 43 samples by amplification for V4 hyper-variable regions of the 18S rRNA gene, and the amplicons were considered to be DNA of Theileria species. The complete nucleotide sequences (1,700 or 1709 bp) of the 18S rRNA gene were determined in 20 samples and were divided into 5 genotypes that were phylogenetically separated into two different lineages showing a polyphyletic relation. The Theileria DNAs of the two different lineages were considered to be those of distinct species.     

Arsenic accumulation and speciation in Japanese paddy rice cultivars

We examined arsenic (As) accumulation and speciation in the major cultivars currently grown in Japan, because differences in grain As levels among cultivars may influence dietary As exposure in Japanese people. Ten major cultivars (Oryza sativa L.) were grown under flooded conditions in a paddy field with a background level of As (low-As soil) or in pots filled with soil containing a high level of As (high-As soil). In the low-As soil, the total grain As ranged from 0.11 to 0.17?mg?kg^?1, with a mean concentration of 0.14?mg?kg^?1, and inorganic As was the major species in all cultivars. There were few genotypic differences in the levels of either total As or inorganic As in the grain. In the high-As soil, total grain As increased to a mean level of 2.4?mg?kg^?1 in the 10 cultivars, with markedly increased levels of dimethylarsinic acid. The genotypic variations among cultivars in the levels of both total As and dimethylarsinic acid were statistically significant. However, the genotypic variability of inorganic As levels was quite small, and these levels remained low (at about 0.2?mg?kg^?1) even when total As levels increased markedly. These results suggest that differences in grain As levels among Japanese cultivars may not influence dietary As exposure, because there is little genotypic difference in the accumulation of inorganic As, which is considered more toxic than organic As to humans. We discuss the possible mechanism of As accumulation in Japanese paddy rice, in the context of the accumulation of As species in the developing grain and in other plant tissues.