Genetic variation among populations of wild safflower, <Emphasis Type="Italic">Carthamus oxyacanthus</Emphasis> analyzed by agro-morphological traits and ISSR markers

Wild species of safflower, Carthamus oxyacanthus Bieb., is highly crossable with cultivated species, C. tinctorius L. and could be directly exploited in broadening safflower gene pool and improving the crop for biotic and abiotic stress environments. In this study, genetic diversity among accessions of C. oxyacanthus and their relationships with cultivated safflower were evaluated using agro-morphological traits and polymorphic inter-simple sequence repeats (ISSR) markers. Significant variation was observed among accessions particularly for seeds per capitulum, seed yield per plant, harvest index and capitula per plant. Cluster analysis based on agro-morphological traits classified the wild accessions in two groups according to their geographical regions, and separated them from the cultivated genotypes. ISSR marker also revealed a high genetic variation among the accessions, and cluster analysis based on this marker divided genotypes into four groups, with cultivated ones in a separate clade. Genetic variation observed among the wild safflower germplasm at the DNA level was higher than the agro-morphological traits, indicating that ISSR is an effective marker system for detecting diversity among safflower genotypes and their genetic relationships. Accessions of C. oxyacanthus with high genetic relationship to cultivated species could be used for interspecific hybridization in breeding programs of safflower.     

Earthworm burrowing behaviour in 2D terraria with single- and multi-species assemblages

Experiments were performed in 2D terraria to investigate the burrowing behaviour of different earthworm species from various ecological categories in single- and multi-species assemblages. The burrowing behaviour was quantified using image analysis software during a 2-week period. Terraria were found to reveal realistic impressions of the burrowing behaviour of various species according to the ecological classification of Bouché into epigeic, endogeic and anecic species. Results of the study also permit the recommending of classifying various earthworms as intermediate species, e.g. Aporrectodea longa as endo-anecic and Lumbricus rubellus as epi-endogeic. Burrowing activity of endogeic species was significantly reduced in multi-species compositions compared to single-species treatments. Moreover, burrowing activity of Octolasion tyrtaeum was significantly reduced in the presence of Lumbricus terrestris compared to the specific single treatment. This endogeic species profited from the burrowing behaviour, e.g. bioturbation, of L. terrestris, and as such this is circumstantial evidence for commensalism (species interaction, in which one partner benefits while the other is unaffected) between anecic and endogeic earthworm species. Simultaneous burrowing activity of a combined assemblage of both endogeic species, Aporrectodea caliginosa and O. tyrtaeum, was also significantly reduced compared with the particular single treatments. Thus, this seems likely to be a response of interspecific competition and trophic niche separation between endogeic species.     

Color analysis of storage roots from the USDA,ARS sweetpotato (<Emphasis Type="Italic">Ipomoea batatas</Emphasis>) germplasm collection

The United States Department of Agriculture (USDA), Agricultural Research Service (ARS), Plant Genetic Resources Conservation Unit in Griffin, GA maintains the United States germplasm collection for Ipomoea spp. (Convolvulaceae). During 2012–2014, 737 sweetpotato, Ipomoea batatas (L.) Lam., plant introductions (PI) were acquired as tissue-culture plantlets and then acclimated to greenhouse conditions at the USDA, ARS, U. S. Vegetable Laboratory (USVL), Charleston, SC. Single plants were transferred to plastic-covered plant beds to produce cuttings for replicated field trials. Storage roots were harvested from 690 PIs grown in the field and 695 PIs grown in pots. Color coordinates were obtained for each PI using a tristimulus colorimeter. Hue angle values (h*) ranged from 8.2° to 88.3° (\( \bar{x} \) = 54.9°) for the periderm (peel or skin) of field-grown storage roots (n = 690 PIs) and ? 9.4° (= 350.6°) to 96.2° (\( \bar{x} \) = 51.3°) for pot-grown roots (n = 695 PIs). The red–green coordinate (a*) ranged from 0.8 to 30.7 (\( \bar{x} \) = 12.8) for the periderm of field-grown roots and ? 2.0 to 44.9 (\( \bar{x} \) = 16.1) for pot-grown roots. The yellow–blue coordinate (b*) ranged from 2.8 to 33.1 (\( \bar{x} \) = 19.4) for the periderm of field-grown roots and ? 7.4 to 38.1 (\( \bar{x} \) = 19.3) for pot-grown roots. Color saturation (chroma, C*) ranged from 13.7 to 35.8 (\( \bar{x} \) = 24.9) for the periderm of field-grown roots and 14.9–45.5 (\( \bar{x} \) = 29.3) for pot-grown roots. Lightness (white–black, L*) ranged from 32.6 to 81.7 (\( \bar{x} \) = 54.6) for the periderm of field-grown roots and 32.1–88.2 (\( \bar{x} \) = 64.0) for pot-grown roots. Hue angles ranged from ? 13.1° (= 346.9°) to 100.9° (\( \bar{x} \) = 80.9°) for the stele (flesh) of field-grown storage roots (n = 672 PIs) and ? 29.9° to 103.5° (\( \bar{x} \) = 81.6°) for pot-grown roots (n = 676 PIs); a* ranged from ? 5.6 to 35.0 (\( \bar{x} \) = 8.0) for the stele of field-grown roots and ? 6.0 to 41.0 (\( \bar{x} \) = 7.6) for pot-grown roots; and b* ranged from ? 7.7 to 56.1 (\( \bar{x} \) = 34.6) for the stele of field-grown roots and ? 12.6 to 56.1 (\( \bar{x} \) = 31.8) for pot-grown roots. C* ranged from 12.7 to 65.8 (\( \bar{x} \) = 37.2) for the stele of field-grown roots and 8.9–65.7 (\( \bar{x} \) = 34.5) for pot-grown roots; and L* ranged from 27.8 to 91.1 (\( \bar{x} \) = 77.7) for the stele of field-grown roots and 28.2–91.9 (\( \bar{x} \) = 80.4) for pot-grown roots. There were significant relationships between stele color (h*) and percent dry matter, with orange stele having a significantly lower % dry matter (\( \bar{x} \) = 25.6%, n = 183) compared with roots with cream/white stele (\( \bar{x} \) = 30.8%, n = 373). There appears to be wide genetic diversity for root color characteristics for the United States sweetpotato germplasm collection.     

Blue honeysuckle (<Emphasis Type="Italic">Lonicera caerulea</Emphasis> L.) vegetative growth cessation and leaf drop phenological adaptation to a temperate climate

Blue honeysuckle (Lonicera caerulea L.) is a northern-adapted crop species with extremely early phenology and cold hardiness. Restricted adaptation to temperate climates is a current limitation to the crop’s mainstream potential for large-scale production. Based on the broad germplasm base at the University of Saskatchewan, vegetative growth cessation and leaf drop phenology were characterized to complement analysis of spring phenological adaptation in a temperate climate. A multi-trial site of three foundation groups and a single-site trial of three improved groups compared with their parental foundation genotypes were conducted in the Fraser Valley, British Columbia, Canada in 2012 and 2013. The current study shows that blue honeysuckle germplasm contains considerable phenological variation that will permit adaptation to temperate climates. It also demonstrates that breeding for improved adaptation is possible using the existing germplasm resources. For Russian germplasm with the earliest phenology, adaptation to northern latitudes and short growing seasons results in early floral initiation, which presents an indirect limitation to production in more southern latitudes due to secondary flowering. Early leaf drop indirectly limits production and is related to poor adaptation to high chill environments. Skew toward later leaf drop in improved groups, produced from hybridization with Japanese and Kuril germplasm with intermediate and late phenologies, respectively, shows that development of better adaptation to southern latitudes can be achieved.     

DNA profiling of figs (<Emphasis Type="Italic">Ficus carica</Emphasis> L.) from Slovenia and Californian USDA collection revealed the uniqueness of some North Adriatic varieties

A set of 23 local varieties from Slovenia and 218 fig accessions from Californian fig germplasm collection were compared to determine the identity of genotypes and their possible genetic relationships. Figs were genotyped using twelve microsatellite loci. One hundred alleles were identified over all microsatellite loci with an average of 8.33 alleles per locus and a polymorphic information content of 0.557 per locus. DNA genotyping demonstrated a relatively high level of genetic diversity between analysed figs. Comparison of fig genotypes from Slovenia and California demonstrated that only six Slovenian varieties shared identical DNA profiles with figs from the Californian collection, while the other 17 Slovenian varieties were unique and characteristic to the North Adriatic region. The information obtained will contribute to a better management of fig genetic resources.     

Maguey (<Emphasis Type="Italic">Agave salmiana</Emphasis>) infructescence morphology and its relationship to yield components

Agaves are long-lived semelparous plants that produce a high number of seeds, in dehiscent capsules, on the apical section of a stalk, up to 5 m long, after 8–25 years. These and other characteristics such as yield and yield components are scarcely evaluated in the plants of the Agave genus. The objective of this study was to quantify the capsules and seeds yield of A. salmiana Otto ex Salm-Dyck plants simultaneously maturing and growing in the same region. Infructescences of three plants simultaneously growing at San Luis Potosí, Mexico, were harvested. On them we evaluated the number of umbels, capsules and seeds (normal and sterile) and their mass per plant. The study was developed on a completely randomized design with each infructescence as an experimental unit. Also, the type distribution of the number and mass of these yield components along the stalk was evaluated with the Chi square test for goodness of fit, the Shapiro–Wilks for normality tests, asymmetry and kurtosis. Data were analyzed with the ANOVA and multiple comparisons by the Tukey test (p?≤?0.05). The number of umbels per plant (17–25), capsule per umbel (2–179) and per plant (554–1990), normal seed per capsule (0–297), normal seeds per plant (30,610–186,209) and sterile seeds per plant (211,059–619,251) widely and significantly varied among infructescences. Biomass of capsules per plant umbel (3–795 g), biomass of sterile and normal seeds per capsule (0.071–1.449 and 0–3.320 g), per umbel (0.34–97.76 and 0.21–185.26 g) and per plant (182–1052 and 334–2069 g) also varied widely. Seed yield was statistically different between plants simultaneously growing and maturing at the same site.     

Genetic diversity and population structure of worldwide eggplant (<Emphasis Type="Italic">Solanum melongena</Emphasis> L.) germplasm using SSR markers

Two hundred and eighty-seven worldwide eggplant accessions were examined for genetic diversity and population structure analysis with 45 SSR markers. The results resolved 242 alleles across all the accessions. Gene diversity ranged from 0.104 to 0.832 with an average of 0.558. Polymorphic information content ranged from 0.102 to 0.815 with an average of 0.507. The genetic diversity analysis classified all accessions into four groups, and the data showed that gene exchanges occurred in two groups during germplasm introduction, domestication, and improvement; however, the frequency was low. Population structure analysis classified 269 accessions into two subgroups, and the remaining 18 accessions were defined as admixed. The accessions from the same geographic origin tend to be clustered into same group. These results provide new insights into the exploitation of genetic diversity of germplasm for eggplant breeding program.     

Molecular cytogenetic identification of newly synthetic <Emphasis Type="Italic">Triticum kiharae</Emphasis> with high resistance to stripe rust

Six new amphiploids, Triticum kiharae Dorof. et Migusch. (2n?=?6x?=?42, A^tA^tGGDD), are described in this study. They were developed by the chromosome doubling of F₁ hybrid crosses between Triticum timopheevii Zhuk. (A^tA^tGG) with high resistance to stripe rust and Aegilops tauschii Cosson (DD) by colchicine treatment. These amphiploids showed a high level of fertility of 68–80% and exhibited relatively normal chromosome pairing in meiotic metaphase I. Individual chromosomes of T. kiharae could be identified by multicolor fluorescence in situ hybridization using the combination of oligonucleotides probes Oligo-pSc119.2-1, Oligo-pTa535-1, and Oligo-pTa71-2. T. kiharae exhibited high resistance to predominant stripe rust races CYR34, CYR31, CYR32, CYR33, and SY11-4 both during the seedling and adult stages. However, high molecular weight glutenin subunits from Ae. tauschii parents were only partially expressed in the T. kiharae background. These T. kiharae lines provide novel materials to widen the genetic diversity of the common wheat gene pool.     

Electrophoretic variation in seed proteins and interrelationships of species in the genus <Emphasis Type="Italic">Oryza</Emphasis>

Comparative studies of two cultivated and sixteen wild species of the genus Oryza were carried out using one- and two-dimensional gel electrophoresis for variation in their seed proteins for interrelationships of these species. A number of polypeptides in the range of molecular weight 13–110 kDa were seen to vary. Under reducing conditions, polypeptides spread over the regions of mol. wt. 33–40.5, 25–27 and 19–21.5 kDa exhibited maximum variation in their patterns. Two-dimensional gel electrophoresis revealed the occurrence of disulphide-linked glutelin polypeptide pairs of mol. wt. 60, 58, 52 and 25 kDa breaking into a large and a small subunit each in the range of mol. wt. 18–40.5 and 16–25 kDa respectively in Oryza sativa. The number of such polypeptide pairs varied from 2 to 6 in different species and also in O. sativa showed variation in mol. wts. of their constituent subunits. The UPGMA dendrogram revealed that most of the Oryza species occurred in different clusters and subclusters and thus did not share very close relationships. The undisputed and closest relationship observed was that of cultivated rice O. sativa with the O. rufipogon followed by that with O. nivara. The African cultivated O. glaberrima occurring on the nearest branch of the same subcluster, thereby, supporting the phylogenetic of these species suggested in earlier studies. Eight diploid species and seven tetraploid species were included in one part of the dendrogram while the remaining two species with AA genome i.e. O. glumaepatula and O. meridionalis and one with FF i.e. O. brachyantha stood separately from these as scattered in the group of seven tetraploid species with BBCC, CCDD and HHJJ genomes. The tetraploids O. alta, O. latifolia and O. grandiglumis with CCDD genomes which occurred on the farthest part were distantly related with O. sativa. The cyanogen bromide peptide maps and two dimensional gel electrophoresis also supported the closest relationship between O. sativa and O. rufipogon.