Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella

Horizontal gene transfer plays a major role in microbial evolution. However, newly acquired sequences can decrease fitness unless integrated into preexisting regulatory networks. We found that the histone-like nucleoid structuring protein (H-NS) selectively silences horizontally acquired genes by targeting sequences with GC content lower than the resident genome. Mutations in hns are lethal in Salmonella unless accompanied by compensatory mutations in other regulatory loci. Thus, H-NS provides a previously unrecognized mechanism of bacterial defense against foreign DNA, enabling the acquisition of DNA from exogenous sources while avoiding detrimental consequences from unregulated expression of newly acquired genes. Characteristic GC/AT ratios of bacterial genomes may facilitate discrimination between a cell's own DNA and foreign DNA.     

Quantum spin hall insulator state in HgTe quantum wells

Recent theory predicted that the quantum spin Hall effect, a fundamentally new quantum state of matter that exists at zero external magnetic field, may be realized in HgTe/(Hg,Cd)Te quantum wells. We fabricated such sample structures with low density and high mobility in which we could tune, through an external gate voltage, the carrier conduction from n-type to p-type, passing through an insulating regime. For thin quantum wells with well width d < 6.3 nanometers, the insulating regime showed the conventional behavior of vanishingly small conductance at low temperature. However, for thicker quantum wells (d > 6.3 nanometers), the nominally insulating regime showed a plateau of residual conductance close to 2e(2)/h, where e is the electron charge and h is Planck's constant. The residual conductance was independent of the sample width, indicating that it is caused by edge states. Furthermore, the residual conductance was destroyed by a small external magnetic field. The quantum phase transition at the critical thickness, d = 6.3 nanometers, was also independently determined from the magnetic field-induced insulator-to-metal transition. These observations provide experimental evidence of the quantum spin Hall effect.     

Physiology of seawater acclimation in the striped bass,Morone saxatilis (Walbaum)

Several experiments were performed to investigate the physiology of seawater acclimation in the striped bass, Morone saxatilis. Transfer of fish from fresh water (FW) to seawater (SW; 31–32 ppt) induced only a minimal disturbance of osmotic homeostasis. Ambient salinity did not affect plasma thyroxine, but plasma cortisol remained elevated for 24h after SW transfer. Gill and opercular membrane chloride cell density and Na⁺,K⁺-ATPase activity were relatively high and unaffected by salinity. Average chloride cell size, however, was slightly increased (16%) in SW-acclimated fish. Gill succinate dehydrogenase activity was higher in SW-acclimated fish than in FW fish. Kidney Na⁺, K⁺-ATPase activity was slightly lower (16%) in SW fish than in FW fish. Posterior intestinal Na⁺,K⁺-ATPase activity and water transport capacity (J_v) did not change upon SW transfer, whereas middle intestinal Na⁺,K⁺-ATPase activity increased 35% after transfer and was correlated with an increase in J_v (110%). As salinity induced only minor changes in the osmoregulatory organs examined, it is proposed that the intrinsic euryhalinity of the striped bass may be related to a high degree of “preparedness” for hypoosmoregulation that is uncommon among teleosts studied to data.     

内蒙古萨拉乌苏河米浪沟湾MIS 5以来生态环境演变特征

通过对毛乌素沙漠南缘萨拉乌苏河流域米浪沟湾地层中有机质含量(TOC)和饱和烃分布特征,以及沉积物中碳酸盐碳氧同位素组成的分析,讨论了该地区末次间冰期以来生态环境的演变特征和过程。MIS5阶段为森林草原环境,气候比较湿润,河流径流量较大;MIS4和MIS2阶段气候干冷,以沙漠堆积为主,但MIS2在16.9-18.4kaBP期间有一次持续大约1.5ka的古环境适宜时期,森林草原发育;MIS3阶段气候温暖湿润,森林草原环境,湖泊发育;全新世早中期总体上向干旱方向发展,湖泊动荡短暂,为较少森林的草原环境。到晚全新世以沙漠沉积为主,成为与目前生态环境相似的干草原环境。该地区的生态环境演变特征反映出主要受冬夏季风变化控制,但如果西风环流加强时期植被也相对发育。     

Wet sieving versus dry crushing: Soil microaggregates reveal different physical structure,bacterial diversity and organic matter composition in a clay gradient

Soil microaggregates contain particles of different sizes, which may affect their potential to store organic carbon (OC). A variety of methods can be used to isolate microaggregates from the larger soil structures, among which wet sieving approaches are widely employed. We developed a novel dry crushing method that isolates microaggregates along failure planes due to mechanical stresses rather than hydraulic pressures and compared the mechanical stability, OC contents and microbial community composition between dry-crushed and wet-sieved samples with contrasting clay contents. Dry-crushed samples exhibited a higher stability and bacterial diversity compared to wet-sieved samples. As a result, the dry-crushed microaggregates had different size distributions when analysed dry and after wetting. In the dry state, dry-crushed microaggregates were larger and contained more sand-sized primary particles within the aggregate structures. The wetting of dry-crushed aggregates caused a disintegration of larger microaggregates and sand-sized primary particles into smaller microaggregates that contained finer particles. In the soils with lower clay contents, the diameter of dry-crushed microaggregates was 40 μm larger due to more sand-sized primary particles remaining within the aggregates. Depending on how much volume in microaggregates is occupied by large primary particles, the OC concentration increased in the soil with higher clay content. Wet-sieved size fractions also showed a similar pattern of OC distribution, whereas more primary particles were observed outside of aggregates. Wet sieving approaches disperse the soil into OC-rich aggregates and might be preferable if OC dynamics are investigated. Differences in bacterial community composition in dependence on clay content were more pronounced in dry-crushed microaggregates. If intact aggregate architectures are of interest for the isolation of soil structural units, the presented dry crushing method might provide an advantageous alternative that also better preserves bacterial diversity.     

Generating genetic variation in narrow‐leafed lupin (Lupinus angustifolius L.) for plant architecture by ethyl methanesulfonate mutagenesis

Narrow‐leafed lupin (NLL) is a source of protein and fibre with exceptional functional properties useful for a variety of purposes. In adapted NLL germplasm selected for low alkaloid contents, the genetic base is narrow, thus limiting fast breeding progress. In an EMS‐based mutagenesis programme, we have treated 40,000 seeds of cv. ‘Boruta’ and obtained a variety of phenotypic mutant lines expressing novel growth types with altered plant height and/or branching. In 3‐year field trials at two locations, three of these lines exhibited significantly improved grain yield components compared to the cv. ‘Boruta’. Growth types of these promising lines were shown to be inherited in a monogenic recessive manner and should, thus, be easily fixable by breeding.     

Interactions of an introduced shrub and introduced earthworms in an Illinois urban woodland: Impact on leaf litter decomposition

This study examined an ‘invasional meltdown’, where the invasion of a Midwestern woodland by an exotic shrub (Rhamnus cathartica L.P. Mill) and the invasion by Eurasian earthworms facilitated one another. Using a litterbag approach, we examined mass loss of four substrates (R. cathartica, Acer saccharum, Quercus rubra, and Quercus alba) along a gradient of Eurasian earthworm density and biomass throughout a 40.5 ha oak woodland in Glencoe, Illinois. Earthworm densities and biomass were greatest in patches where R. cathartica prevailed, and populations were lowest in an upland forest subcommunity within the woodland. At each of three points along this earthworm gradient, we placed replicated litterbags constructed either to permit or to deny access to the litter by earthworms. The treatments were, therefore, plot treatments (low, medium and high earthworm density and biomass) and litterbag treatments (earthworm access and earthworm excluded). We found that earthworms promoted a very rapid loss of litter from R. cathartica bags. Within 3 months greater than 90% of this litter was lost from the litterbags. Earthworm impacts on other substrates followed the sequence A. saccharum>Q. alba=Q. rubra. Effects of both litterbag and plot treatments were found within 3 months for A. saccharum but Quercus species were affected only after a year. We propose that the impact of earthworms on litter breakdown creates conditions that promote and sustain invasion by R. cathartica. Previous work has demonstrated that R. cathartica may alter soil properties in a way that promotes and sustains invasion by earthworms. These findings have implications for the restoration management of these systems, since the legacy of R. cathartica on soil properties and earthworm populations may persist even after the plant has been physically removed.     

Development of a teleoperation system for agricultural vehicles

A teleoperation system for a hydro-static transmission (HST) drive crawler-type robotic vehicle is described in this paper. The system was developed to satisfy the needs of various farm operations and teleoperation in unknown agricultural fields. The controller has a layered architecture and supports two degrees of cooperation between the operator and robot, direct and supervisory control. The vehicle can travel autonomously by using an RTK-GPS and a fiber-optic gyroscope during supervisory control, and the operator interface also provides a field navigator based on Google Map technology. The vehicle's position and heading direction was capable of 1 Hz update using precise satellite image maps. The results of field tests using direct control showed that it is difficult for the operator to control the movement of the vehicle along the target lines. On the other hand, the vehicle could travel in a straight line with a maximum lateral error of 0.3 m by using supervisory control.     

FG-rich repeats of nuclear pore proteins form a three-dimensional meshwork with hydrogel-like properties

Nuclear pore complexes permit rapid passage of cargoes bound to nuclear transport receptors, but otherwise suppress nucleocytoplasmic fluxes of inert macromolecules >/=30 kilodaltons. To explain this selectivity, a sieve structure of the permeability barrier has been proposed that is created through reversible cross-linking between Phe and Gly (FG)-rich nucleoporin repeats. According to this model, nuclear transport receptors overcome the size limit of the sieve and catalyze their own nuclear pore-passage by a competitive disruption of adjacent inter-repeat contacts, which transiently opens adjoining meshes. Here, we found that phenylalanine-mediated inter-repeat interactions indeed cross-link FG-repeat domains into elastic and reversible hydrogels. Furthermore, we obtained evidence that such hydrogel formation is required for viability in yeast.