Independent Component Analysis for Three-Way Data With an Application From Atmospheric Science

In this paper, a new approach to independent component analysis (ICA) for three-way data is considered. The rotational freedom of the three-mode component analysis (Tucker3) model is exploited to implement ICA in one mode of the data. The performance of the proposed approach is evaluated by means of numerical experiments. An illustration with real data from atmospheric science is presented, where the first mode is spatial location, the second is time and the third is a set of different meteorological variables representing geopotential heights at various vertical pressure levels. The results show that the three-mode decomposition finds spatial patterns of climate anomalies which can be interpreted in a meteorological sense and as such gives an insightful low-dimensional representation of the data.     

Megacity emissions and lifetimes of nitrogen oxides probed from space

Megacities are immense sources of air pollutants, with large impacts on air quality and climate. However, emission inventories in many of them still are highly uncertain, particularly in developing countries. Satellite observations allow top-down estimates of emissions to be made for nitrogen oxides (NO(x) = NO + NO(2)), but require poorly quantified a priori information on the NO(x) lifetime. We present a method for the simultaneous determination of megacity NO(x) emissions and lifetimes from satellite measurements by analyzing the downwind patterns of NO(2) separately for different wind conditions. Daytime lifetimes are ~4 hours at low and mid-latitudes, but ~8 hours in wintertime for Moscow. The derived NO(x) emissions are generally in good agreement with existing emission inventories, but are higher by a factor of 3 for the Saudi Arabian capital Riyadh.     

BRCA1 tumor suppression depends on BRCT phosphoprotein binding, but not its E3 ligase activity

Germline mutations of the breast cancer 1 (BRCA1) gene are a major cause of familial breast and ovarian cancer. The BRCA1 protein displays E3 ubiquitin ligase activity, and this enzymatic function is thought to be required for tumor suppression. To test this hypothesis, we generated mice that express an enzymatically defective Brca1. We found that this mutant Brca1 prevents tumor formation to the same degree as does wild-type Brca1 in three different genetically engineered mouse (GEM) models of cancer. In contrast, a mutation that ablates phosphoprotein recognition by the BRCA C terminus (BRCT) domains of BRCA1 elicits tumors in each of the three GEM models. Thus, BRCT phosphoprotein recognition, but not the E3 ligase activity, is required for BRCA1 tumor suppression.     

Surface melt-induced acceleration of Greenland ice-sheet flow

Ice flow at a location in the equilibrium zone of the west-central Greenland Ice Sheet accelerates above the midwinter average rate during periods of summer melting. The near coincidence of the ice acceleration with the duration of surface melting, followed by deceleration after the melting ceases, indicates that glacial sliding is enhanced by rapid migration of surface meltwater to the ice-bedrock interface. Interannual variations in the ice acceleration are correlated with variations in the intensity of the surface melting, with larger increases accompanying higher amounts of summer melting. The indicated coupling between surface melting and ice-sheet flow provides a mechanism for rapid, large-scale, dynamic responses of ice sheets to climate warming.     

A new algorithm for automatic Rumex obtusifolius detection in digital images using colour and texture features and the influence of image resolution

In Gebhardt et al. (2006) an object-oriented image classification algorithm was introduced for detecting Rumex obtusifolius (RUMOB) and other weeds in mixed grassland swards, based on shape, colour and texture features. This paper describes a new algorithm that improves classification accuracy. The leaves of the typical grassland weeds (RUMOB, Taraxacum officinale, Plantago major) and other homogeneous regions were segmented automatically in digital colour images using local homogeneity and morphological operations. Additional texture and colour features were identified that contribute to the differentiation between grassland weeds using a stepwise discriminant analysis. Maximum-likelihood classification was performed on the variables retained after discriminant analysis. Classification accuracy was improved by up to 83% and Rumex detection rates of 93% were achieved. The effect of image resolution on classification results was investigated. The eight million pixel images were upscaled in six stages to create images with decreasing pixel resolution. Rumex detection rates of over 90% were obtained at almost all resolutions, and there was only moderate misclassification of other objects to RUMOB. Image processing time ranged from 45 s for the full resolution images to 2.5 s for the lowest resolution ones.     

Utilization of potatoes for life support systems II. The effects of temperature under 24-H and 12-H photoperiods

The growth and tuberization of Norland potatoes were studied under five different temperatures and two photoperiods. Treatment levels included 12, 16, 20, 24, and 28 C with either a 24-h (continuous light) or a 12-h photoperiod at 400 μmol m^-2 s^-1 PPF. Plants were grown in 6-liter containers and harvested at 56-days-age. Stem length increased with increasing temperature under both photoperiods. The highest tuber yield occurred at 16 C under the 24-h photoperiod (755 g/plant) and at 20 C under the 12-h photoperiod (460 g/plant). Little or no tuber formation occurred at 28 C under either photoperiod or at 24 C under continuous light. As with tuber yield, the highest total plant dry weights also occurred at 16 C under the 24-h photoperiod and at 20 C under the 12-h photoperiod. Harvest index (tuber dry weight to total dry weight ratio) decreased with increasing temperatures and with continuous light. Results indicate that good growth and tuberization can occur under continuous light, and that increasing the photoperiod from 12 to 24 h effectively decreased the optimal temperature for tuber formation from near 20 C to 16 C. Alternatively, the results imply that at cooler temperatures, the potato becomes less obligate for dark period stimulation of tuberization.     

Assessment of postoperative pain after unilateral mastectomy using two different surgical techniques in dogs

Background

There are few studies reporting pain and postoperative analgesia associated with mastectomy in dogs. The aim of this study was to evaluate postoperative pain after unilateral mastectomy using two different surgical techniques in the dog.

Findings

Twenty female dogs were assigned (n=10/group) to undergo unilateral mastectomy using either the combination of sharp and blunt dissection (SBD) or the modified SBD (mSBD) technique, in which the mammary chain is separated from the abdominal wall entirely by blunt (hand and finger) dissection except for a small area cranial to the first gland, in a prospective, randomized, clinical trial. All dogs were premedicated with intramuscular acepromazine (0.05 mg/kg) and morphine (0.3 mg/kg). Anesthesia was induced with intravenous ketamine (5 mg/kg) and diazepam (0.25 mg/kg), and maintained with isoflurane. Subcutaneous meloxicam (0.2 mg/kg) was administered before surgery. Postoperative pain was evaluated according to the University of Melbourne pain scale (UMPS) by an observer who was blinded to the surgical technique.. Rescue analgesia was provided by the administration of intramuscular morphine (0.5 mg/kg) if pain scores were >14 according to the UMPS. Data were analyzed using t-tests and ANOVA (P>0.05). There were no significant differences between the groups for age, weight, extubation time, and duration of surgery and anesthesia (P>0.05). There were no significant differences for postoperative pain scores between groups. Rescue analgesia was required in one dog in each group.

Conclusions

The two surgical techniques produced similar surgical times, incidence of perioperative complications and postoperative pain. Multimodal analgesia is recommended for treatment of postoperative pain in dogs undergoing unilateral mastectomy.     

Identification of pests and pathogens recorded in Europe with relation to fruit imports

Within the framework of the EU project DROPSA (‘Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens’), a review on pests (including pathogens) that have fruit species as their host plants was conducted. The focus was on pests that have been introduced into Europe or were found in the fruit trade during the last 10–15 years. Among the 387 recorded pests, the following groups were identified: 1. fruit and vinegar flies, 2. scale insects, 3. fungi, 4. plant viruses, 5. bacteria, 6. pests of unknown risk, 7. tropical fruit pests, 8. pests that had an unexpected change of hosts, 9. fruit pests not likely to be transported on fruit and 10. ‘hitchhikers’ (non‐fruit pests intercepted on fruit/fruit plants, fruit pests intercepted on other commodities than fruit). The large number of pests identified, from different taxonomic groups and origins, shows that fruit are an important pathway for pests, threatening fruit production in Europe.     

Shrinkage potential and pore shrinkage capacity of differently developed volcanic ash soils under pastures in southern Chile

The drying process of volcanic ash soils often results in the formation of shrinkage cracks with consequences for their physical properties (i.e., decrease of water retention capacity) and land use management. This study presents the soil water characteristics and shrinkage behaviour (shrinkage phases in terms of void and moisture ratio), the shrinkage potential (COLE index), and the pore shrinkage capacity (PSI) for 5 and 20 cm depth of a Haplic Arenosol (tephric) and two Silandic Andosols under pasture management along a soil gradient from the Andean mountains to the coastal range in southern Chile. The main focus of the presented study is on the effect of soil development in conjunction with the weathering of volcanic ash soils on the shrinkage properties. The water retention and shrinkage curves were continuously determined for undisturbed soil samples (100 cm³) during a drying process under laboratory conditions. In addition, the shrinkage curve data were modelled to distinguish different shrinkage zones. The results suggest that the investigated soil properties vary depending on soil development. The more developed Andosols had higher total porosities (up to 70 cm³ cm^?3) than the less developed Arenosol. The shrinkage behaviour of the Haplic Arenosol showed a wide structural shrinkage phase, whereas the Silandic Andosols revealed a more pronounced proportional shrinkage phase, which is related to the pore size distribution. In addition, wide and narrow coarse pores of the Haplic Arenosol and medium and fine pores of the Silandic Andosols determine the shrinkage potential (COLE) and the pore shrinkage capacity, respectively. The finer‐grained and organic matter‐rich Andosols indicate a higher COLE index (> 0.03–0.09) compared to the Arenosol (≤ 0.03). The pore shrinkage index (PSI) of the total pores (TP) varied significantly (P < 0.05) with values of 0.042–0.149 in 5 cm depth and 0.04–0.091 in 20 cm depth of sites 1–3, respectively.In summary, the shrinkage potential and pore shrinkage capacity are positively correlated to the organic carbon content and decrease with increasing dry bulk density. The study points out a higher risk of soil degradation due to irreversible drying processes for the more clayey and allophane containing Andosols than the Arenosol.