Genome-wide association mapping and genomic prediction of Fusarium head blight resistance,heading stage and plant height in winter rye (Secale cereale)

Rye is a multi-purpose cereal crop grown in Central and Eastern Europe as well as in Western Canada. Fusarium head blight (FHB) is one of the diseases that have a severe negative impact on rye, but knowledge about FHB resistance at the genomic level is totally missing in rye. The objective of this study was to elucidate the genetic architecture of FHB resistance in winter rye using genome-wide association (GWA) mapping complemented by genomic prediction (GP) in comparison with marker-assisted selection (MAS). Additionally, plant height and heading stage were analysed. A panel of 465 S₁-inbred lines of winter rye was phenotyped in three environments (location–year combinations) for FHB resistance by inoculation with Fusarium culmorum and genotyped with a 15k SNP array. Significant genotypic variation and high heritabilities were found for FHB resistance, heading stage and plant height. FHB did not correlate with heading stage, but was moderately correlated with plant height (r = −.52, p < .001) caused by some susceptible short inbred lines. The GWA scan identified 15 QTL for FHB resistance that jointly explained 74% of the genotypic variance. In addition, we detected 11 QTL for heading stage and 8 QTL for plant height, explaining 26% and 14% of the genotypic variance, respectively. A genome-wide prediction approach resulted in 44% higher prediction abilities than marker-assisted selection for FHB resistance. In conclusion, genomic approaches appear promising to improve and accelerate breeding for complex traits in winter rye.     

An Overview of Potential Seaweed-Derived Bioactive Compounds for Pharmaceutical Applications

Nowadays, seaweeds are widely involved in biotechnological applications. Due to the variety of bioactive compounds in their composition, species of phylum Ochrophyta, class Phaeophyceae, phylum Rhodophyta and Chlorophyta are valuable for the food, cosmetic, pharmaceutical and nutraceutical industries. Seaweeds have been consumed as whole food since ancient times and used to treat several diseases, even though the mechanisms of action were unknown. During the last decades, research has demonstrated that those unique compounds express beneficial properties for human health. Each compound has peculiar properties (e.g., antioxidant, antimicrobial, antiviral activities, etc.) that can be exploited to enhance human health. Seaweed’s extracted polysaccharides are already involved in the pharmaceutical industry, with the aim of replacing synthetic compounds with components of natural origin. This review aims at a better understanding of the recent uses of algae in drug development, with the scope of replacing synthetic compounds and the multiple biotechnological applications that make up seaweed’s potential in industrial companies. Further research is needed to better understand the mechanisms of action of seaweed’s compounds and to embrace the use of seaweeds in pharmaceutical companies and other applications, with the final scope being to produce sustainable and healthier products.     

Are there alternatives to copper for controlling grapevine downy mildew in organic viticulture?

Downy mildew caused by the obligate biotrophic oomycete Plasmopara viticola is one of the most important and devastating diseases of grapevine. Copper-based fungicides are used to control the disease in organic vineyards. However, since 2006, copper use has been limited by an European Commission regulation. In this study conducted from 2004 to 2007, we tested materials that might replace copper in organic viticulture, under controlled greenhouse and field conditions at two locations in Europe (northern Italy and Switzerland). We tested 112 different treatments, including biocontrol agents, materials of animal origin, homeopathic preparations, inorganic materials, microbial extracts, natural derivatives, plant extracts, physical methods and synthetic materials. Good control results were observed for two new copper formulations, but one of them induced phytotoxic effects. Two of the plant extracts provided good control on both leaves and clusters, and six of them controlled the infection on clusters only. One biocontrol agent reduced symptoms on leaves and bunches. Three of the other treatments provided good control on leaves, and four of them provided good control on bunches. Clay was as effective as copper on both leaves and bunches. Currently, even if there is no treatment that is as effective as copper for controlling grapevine downy mildew in organic vineyards, Yucca schidigera and Salvia officinalis extracts and Trichoderma harzianum, could be considered as promising candidates to be developed. This study may help the development of an integrated management program in which a less effective product is applied in combination with copper, to reduce the total quantities of copper applied.     

Haplotypes of the Potato Psyllid, Bactericera cockerelli, on the Wild Host Plant, Solanum dulcamara, in the Pacific Northwestern United States

‘Candidatus Liberibacter solanacearum’ (Lso) is a bacterium that infects solanaceous crops and causes plant decline and yield losses, especially in potato and tomato. Lso is transmitted to these hosts by the potato psyllid (Bactericera cockerelli Sulc) vector. B. cockerelli host plants are not limited to crop plants, but also include many wild, solanaceous weeds. These wild hosts could potentially impact overwintering and breeding of the psyllids and serve as reservoirs for Lso. In the Pacific Northwestern United States, B. cockerelli was recently reported to overwinter on bittersweet nightshade (Solanum dulcamara L.). The present study utilized high resolution melting analysis of the B. cockerelli mitochondrial cytochrome c oxidase I gene to assess the psyllid populations occurring on S. dulcamara during the summer and winter months in Washington, Oregon, and Idaho. This technique has previously been used to analyze the cytochrome c oxidase I gene of B. cockerelli, and has identified four psyllid haplotypes. Lso infection was also determined for the psyllids collected from S. dulcamara. During both the summer and the winter months in the Pacific Northwest, the Northwestern psyllid haplotype was the predominant population found living on S. dulcamara. However, low levels of the Western psyllid population were also present in Washington and Oregon during the same period. No overwintering psyllids tested were Lso-infected, suggesting that these populations do not pose an imminent threat of Lso transmission to newly emerging potatoes and other solanaceous crops in the region, unless a source of Lso becomes available.     

Content and relative composition of some phytochemicals in diploid,tetraploid and hexaploid Triticum species with potential nutraceutical properties

Seven cultivated Triticum species or subspecies (Triticum monococcum, Triticum turgidum ssp dicoccum, T. turgidum ssp. durum, T. turgidum ssp turanicum, Triticum timopheevii, Triticum aestivum and Triticum zhukovskyi) were compared for their contents of bioactive compounds, mainly 5-n-alkylresorcinols (ARs). Multivariate analysis of variance and principal component analysis were used to evaluate the differences in the phytochemical profiles and to establish the relationships among variables. Significant differences were observed for both total phenol (TP) and AR content. The highest AR level (377 μg/g) was observed in Triticum dicoccum, which also exhibited the highest variability for these compounds (298–436 μg/g). By contrast, the lowest AR content (286 μg/g) was found in Triticum durum. C21:0 was the main homologue chain in all the samples, its value ranging between 54.5% in T. durum and 41.2% in T. aestivum. The T. dicoccum and T. monococcum wheats had relatively low amounts of TP, whereas Triticum turanicum (215 mg/kg), T. timopheevii (250 mg/kg) and T. zhukovskyi (286 mg/kg) had approximately 3-fold higher TP levels. These results suggest that there are opportunities for breeding wheat varieties with superior health benefits and for promoting the use of ancient Triticum crops as novel sources of healthy food.     

Influence of genotype and environment on the content of 5-n alkylresorcinols,total phenols and on the antiradical activity of whole durum wheat grains

The 5-n-alkylresorcinol (AR) contents of thirty different cultivars of durum wheat grown in two years (2009 and 2010) in two Italian locations were determined and related to the total soluble phenolic content (TPC) and antiradical activity (AA). On average, AR and TPC ranged from 161.3 to 405.8 μg/g (dry matter, DM) and from 19.0 to 192.4 μg/g (DM), respectively. AA (EC₅₀ values) ranged from 70.9 to 289.2 mg of dry whole milled wheat grain (DM). The results showed that the environment (E) and the genotype (G), as well as their interactions (G × E), significantly influenced the phytochemical profiles of the samples. The contribution of G × E to the total variance was much lower than that due to the separate effects (G and E). Principal component analysis identified genotypes that were richer in ARs and more stable across environments. There were significant negative correlations between ARs and TPC (p < 0.05) and between TPC and AA (p < 0.01), but not between ARs and AA. Graphical representation was efficient in summarizing the overall antiradical profiles of the durum wheat grain in each environment.     

Bottlenose dolphins share fish farm areas while maintaining sexual segregation: Investigating group memberships through spatially and temporally explicit parameters

1. Group membership is a key attribute of animal societies and central to the study of social structure in several taxa. However, social structure analyses are sensitive to the way data are collected and associations defined.
2. In this study, a time–space method was used to investigate the social structure of common bottlenose dolphins Tursiops truncatus observed and photographed across 7 years in the semi-enclosed Gulf of Corinth, Greece. Instead of adopting traditional group definitions, individuals were considered as being members of the same group if photographed within a specific time and space window. This approach can be applied post hoc across studies and can offer advantages under challenging sampling conditions (e.g. when dealing with groups spread over vast areas or when group membership is otherwise hard to assess).
3. Dolphins were mostly found around coastal cage aquaculture facilities farming European sea bass Dicentrarchus labrax and gilthead seabream Sparus aurata.
4. Dolphins formed clusters largely or entirely composed of individuals of the same sex, suggestive of sex-based homophily. Habitat partitioning was not detected: there was substantial spatial overlap among dolphin clusters, with all individuals using a relatively small area in the northern portion of the Gulf, where most of the productive fish farms were located. Associations between females were stronger than those between males, and daughters tended to stay in the group of their mothers.
5. Sex-based social clustering may allow females and calves to limit interactions with potentially aggressive males, while individuals of both sexes benefit from prey concentrated around fish farms.
6. Adaptation to foraging around farms can result in trade-offs between the costs and benefits of nourishment and social interaction. This may have both positive or negative effects on the animals that should be considered in the context of ensuring their favourable conservation status.