Developmental neuroethology: changes in escape and defensive behavior during growth of the lobster

The changes in relative efficacy of two incompatible behaviors was investigated during growth of the lobster, Homarus americanus. In larval and early juvenile stages, physiological and morphological factors favor use of the escape response over defensive behavior. In large animals, defensive behavior is preferred almost exclusively to escape behavior unless the claws are lost. The interaction of escape and defensive behavior is modified by neural and morphological factors, which are dependent on the stage in the life cycle of the organism.     

Ellipsosomes: organelles containing a cytochrome-like pigment in the retinal cones of certain fishes

Ellipsosomes are dense spherical bodies containing a very large concentration of a heme pigment spectroscopically resembling pure cytochrome c. They are located at the outer ends of the inner segments of the cones of certain fishes. Although, superficially, they resemble the similarly located oil droplets in the cones of birds and reptiles, their ultrastructure and staining properties resemble those of the neighboring mitochondria. However, like the oil droplets, they may serve as intracellular color filters.     

Paleocirculation of the deep north atlantic: 150,000-year record of benthic foraminifera and oxygen-18

Benthic foraminiferal faunas in a piston core from 3331 meters at 44 degrees N on the Mid-Atlantic Ridge show striking variations in the relative abundance of species. Uvigerina peregrina, which is broadly distributed today in the South Atlantic and in the Pacific in water that has been long isolated from the surface, is absent in the North and Equatorial Atlantic at depths occupied by highly oxygenated North Atlantic deep water. This species dominated the fauna at this site for much of the past 150,000 years. It is suggested that North Atlantic deepwater production was much reduced or eliminated at times of Uvigerina peregrina abundance, as a result of cooling and stratification of the Norwegian Sea surface, coincident with the times of the southward migration of the polar front in the North Atlantic.     

Single-nutrient microbial competition: qualitative agreement between experimental and theoretically forecast outcomes

When microbial strains compete for the same limiting nutrient in continuous culture, resource-based competition theory predicts that only one strain will survive and all others will die out. The surviving strain expected from theory will be the one with the smallest subsistence or "break-even" concentration of the limiting resource, a concentration defined by the J parameter. This prediction has been confirmed in the case of auxotrophic bacterial strains competing for limiting tryptophan. Because the value of J can be measured on the strains grown alone, the theory can predict the qualitative outcomes of mixed-growth competition in advance of actual competition.     

The origin of the turtle body plan: bridging a famous morphological gap

A restudy of pareiasaurs reveals that these primitive reptiles are the nearest relatives of turtles. The two groups share numerous derived characters, such as a reduced presacral count, an acromion process, and a trochanter major, which are absent in other basal amniotes. Many traits long thought specific to chelonians also occur in pareiasaurs and must have evolved before the distinctive turtle shell appeared. Evidence uniting captorhinid or procolophonoids with turtles is shown to be weak. The phylogeny proposed here also suggests that certain features of the earliest turtle (Proganochelys) that have been interpreted as specializations, such as the large supratemporal and robust metacarpals, are primitive for turtles. In pareiasaurs, the osteoderms represent the precursors of the chelonian shell and the morphology of the anterior region is consistent with the idea that the shoulder girdle in turtles has migrated posteriorly into the rib cage.     

Galaxies, human eyes, and artificial neural networks

The quantitative morphological classification of galaxies is important for understanding the origin of type frequency and correlations with environment. However, galaxy morphological classification is still mainly done visually by dedicated individuals, in the spirit of Hubble's original scheme and its modifications. The rapid increase in data on galaxy images at low and high redshift calls for a re-examination of the classification schemes and for automatic methods. Here are shown results from a systematic comparison of the dispersion among human experts classifying a uniformly selected sample of more than 800 digitized galaxy images. These galaxy images were then classified by six of the authors independently. The human classifications are compared with each other and with an automatic classification by an artificial neural network, which replicates the classification by a human expert to the same degree of agreement as that between two human experts.     

Rapid wastage of Alaska glaciers and their contribution to rising sea level

We have used airborne laser altimetry to estimate volume changes of 67 glaciers in Alaska from the mid-1950s to the mid-1990s. The average rate of thickness change of these glaciers was -0.52 m/year. Extrapolation to all glaciers in Alaska yields an estimated total annual volume change of -52 +/- 15 km3/year (water equivalent), equivalent to a rise in sea level (SLE) of 0.14 +/- 0.04 mm/year. Repeat measurements of 28 glaciers from the mid-1990s to 2000-2001 suggest an increased average rate of thinning, -1.8 m/year. This leads to an extrapolated annual volume loss from Alaska glaciers equal to -96 +/- 35 km3/year, or 0.27 +/- 0.10 mm/year SLE, during the past decade. These recent losses are nearly double the estimated annual loss from the entire Greenland Ice Sheet during the same time period and are much higher than previously published loss estimates for Alaska glaciers. They form the largest glaciological contribution to rising sea level yet measured.     

Autumn bloom of antarctic pack-ice algae

An autumn bloom of sea-ice algae was observed from February to June of 1992 within the upper 0.4 meter of multiyear ice in the Western Weddell Sea, Antarctica. The bloom was reliant on the freezing of porous areas within the ice that initiated a vertical exchange of nutrient-depleted brine with nutrient-rich seawater. This replenishment of nutrients to the algal community allowed the net production of 1760 milligrams of carbon and 200 milligrams of nitrogen per square meter of ice. The location of this autumn bloom is unlike that of spring blooms previously observed in both polar regions.     

Mutant Trp repressors with new DNA-binding specificities

Oligonucleotide-directed mutagenesis of the codons for glutamine-68 (Gln68), lysine-72 (Lys72), isoleucine-79 (Ile79), alanine-80 (Ala80), and threonine-81 (Thr81) of the Escherichia coli trpR (tryptophan aporepressor) gene was used to make mutant repressors with each of 36 different amino acid changes. Mutant repressors were tested for binding to each member of a set of 28 different operators closely related to the consensus trp operator. Of the 36 mutant repressors, 11 bind a subset of the 28 operators; 5 of these have new binding specificities. These new specificities indicate that the hydroxyl group of Thr81 makes a specific contact with one of the four critical base pairs in a trp operator half-site, and the methyl group of Thr81 determines specificity at a second, critical base pair. The Trp repressor does not use the first two amino acids of its "recognition alpha-helix," Ile79 and Ala80, to make sequence-specific DNA contacts, and interacts with its operator in vivo in a way fundamentally different from the way that phage lambda repressor, lambda Cro protein, and coliphage 434 repressor contact their respective binding sites.     

Three-dimensional structure of human serum albumin

The three-dimensional structure of human serum albumin has been solved at 6.0 angstrom (A) resolution by the method of multiple isomorphous replacement. Crystals were grown from solutions of polyethylene glycol in the infrequently observed space group P42(1)2 (unit cell constants a = b = 186.5 +/- 0.5 A and c = 81.0 +/- 0.5 A) and diffracted x-rays to lattice d-spacings of less than 2.9 A. The electron density maps are of high quality and revealed the structure as a predominantly alpha-helical globin protein in which the course of the polypeptide can be traced. The binding loci of several organic compounds have been determined.