Using landscape and depth gradients to decouple the impact of correlated environmental variables on soil microbial community composition

Simultaneously assessing shifts in microbial community composition along landscape and depth gradients allows us to decouple correlations among environmental variables, thus revealing underlying controls on microbial community composition. We examined how soil microbial community composition changed with depth and along a successional gradient of native prairie restoration. We predicted that carbon would be the primary control on both microbial biomass and community composition, and that deeper, low-carbon soils would be more similar to low-carbon agricultural soils than to high carbon remnant prairie soils. Soil microbial community composition was characterized using phospholipid fatty acid (PLFA) analysis, and explicitly linked to environmental data using structural equations modeling (SEM). We found that total microbial biomass declined strongly with depth, and increased with restoration age, and that changes in microbial biomass were largely attributable to changes in soil C and/or N concentrations, together with both direct and indirect impacts of root biomass and magnesium. Community composition also shifted with depth and age: the relative abundance of sulfate-reducing bacteria increased with both depth and restoration age, while gram-negative bacteria declined with depth and age. In contrast to prediction, deeper, low-C soils were more similar to high-C remnant prairie soils than to low-C agricultural soils, suggesting that carbon is not the primary control on soil microbial community composition. Instead, the effects of depth and restoration age on microbial community composition were mediated via changes in available phosphorus, exchangeable calcium, and soil water, together with a large undetermined effect of depth. Only by examining soil microbial community composition shifts across sites and down the soil column simultaneously were we able to tease apart the impact of these correlates environmental variables.     

Vulnerability of Community-Based Forest Management to Climate Variability and Extremes: Emerging Insights on the Contribution of REDD+

Climate change spurs havoc on social-ecological system. People and places vulnerable to climate change have been the focus of many discussions. However, in the forestry sector, limited studies have been conducted that link human vulnerability to recent initiatives, such as reducing emissions from deforestation and forest degradation or REDD+, especially in highly vulnerable countries. Using case studies from the Philippines, this paper focuses on the vulnerability of two community-based forest management (CBFM) organizations, with and without REDD+ readiness intervention, to show the impacts of climate variability and extremes. Two balance-weighted approaches, the livelihood vulnerability index and the IPCC-framework, were used in the vulnerability assessments. Results revealed high vulnerability of both CBFM organizations, although Malitbog Upland Developers for Sustainable Association (MUDSA) livelihood vulnerability is largely aggravated by its exposure to disaster, climate variability and extremes, accessibility to health facilities and water supply. The long history of CBFM implementation in both organizations have minimal contribution in enhancing the adaptive capacity of members to cope with and adapt to climate change impacts. REDD+ (readiness), does not insure reduced vulnerability to climate change, unless sustainable livelihood is achieved. As the State controls forest resources, the rights of CBFM-organizations to commercially benefit from these resources are limited, a disincentive to the development of new and viable development programs in CBFM areas, such as REDD+. This also constrains the achievement of climate resiliency.     

Germinate to exterminate: chemical stimulation of Spongospora subterranea resting spore germination and its potential to diminish soil inoculum

Hoagland's solution (HS), a defined nutrient supplement for plants, has been previously reported to stimulate zoospore release from resting spores of the potato pathogen Spongospora subterranea f. sp. subterranea. This study obtained direct empirical evidence for an increase in zoospore release with HS treatment, and identified Fe‐EDTA as the stimulant component of HS. Stimulation of resting spores by HS and Fe‐EDTA resulted in greater and earlier zoospore release compared to a distilled water control, and in the presence of a susceptible tomato host plant resulted in enhanced root infection. Given the labile nature of S. subterranea zoospores, it was postulated that stimulation of premature release of zoospores from the dormant resting spores in absence of susceptible hosts could reduce soil inoculum levels. In two glasshouse trials in the absence of host plants, both Fe‐EDTA and HS soil treatments reduced S. subterranea soil inoculum levels, providing proof of concept for the ‘germinate to exterminate’ approach to inoculum management.     

Prospects for management strategies of invasive crayfish populations with an emphasis on biological control

• 1. The white‐clawed crayfish, Austropotamobius pallipes (Lereboullet), is the only freshwater crayfish indigenous to Great Britain and Ireland. It has a widespread, though declining distribution in England and parts of Wales but does not occur naturally in Scotland.
• 2. The North American signal crayfish, Pacifastacus leniusculus (Dana), is not native to Europe and was introduced to Britain in the 1970s. The signal crayfish out‐competes the native white‐clawed crayfish as it is larger and more aggressive. It is also responsible for the introduction and spread of crayfish plague, which has devastated white‐clawed crayfish populations in Europe.
• 3. Signal crayfish populations are causing significant changes to the equilibrium of native flora and fauna through increased grazing and predation pressures; they also contribute to habitat degradation through burrowing.
• 4. Manual removal of crayfish using traps and pond trials with biocides have met with moderate success in reducing crayfish numbers and containing populations. However, with new populations of signal crayfish being reported each year within the UK, there is now an urgent need to develop a strategy with which to eradicate or contain their spread.
• 5. Signal crayfish have populated many habitat types in the UK, each of which may require a different control strategy; hence no single strategy or universal solution is likely to be attainable.
• 6. Signal crayfish are susceptible to various biocides and microbial pathogens but significant scientific research will be required to develop safe biological control methods and integrated pest management (IPM) strategies to control these invasive organisms. Copyright © 2009 John Wiley & Sons, Ltd.

     

基于人工神经网络的数据处理和多目标群方法用土壤传递函数(PTFs)估算保水性

Pedotransfer functions(PTFs) have been developed to estimate soil water retention curves(SWRC) by various techniques.In this study PTFs were developed to estimate the parameters(θ s,θ r,α and λ) of the Brooks and Corey model from a data set of 148 samples.Particle and aggregate size distribution fractal parameters(PSDFPs and ASDFPs,respectively) were computed from three fractal models for either particle or aggregate size distribution.The most effective model in each group was determined by sensitivity analysis.Along with the other variables,the selected fractal parameters were employed to estimate SWRC using multi-objective group method of data handling(mGMDH) and different topologies of artificial neural networks(ANNs).The architecture of ANNs for parametric PTFs was different regarding the type of ANN,output layer transfer functions and the number of hidden neurons.Each parameter was estimated using four PTFs by the hierarchical entering of input variables in the PTFs.The inclusion of PSDFPs in the list of inputs improved the accuracy and reliability of parametric PTFs with the exception of θ s.The textural fraction variables in PTF1 for the estimation of α were replaced with PSDFPs in PTF3.The use of ASDFPs as inputs significantly improved α estimates in the model.This result highlights the importance of ASDFPs in developing parametric PTFs.The mGMDH technique performed significantly better than ANNs in most PTFs.     

Dietary protein for young grazing sheep: Interactions with gastrointestinal parasitism

Effects of protein supplementation and of nematode control on production responses in young grazing sheep and on nematode population dynamics were assessed. Young Merino wether sheep (n = 270) were allocated to one of three supplementation (Su) treatments and one of three regimes of nematode control (drench, Dr) in a factorial design. Each of the nine treatments was replicated three times in a randomised complete block. Animals received no supplement (SuO) or were given supplements at a level equivalent to 200 g day⁻¹, fed three times a week. The supplements contained 25% lucerne meal with either 75% sunflower meal (Su1) or 75% formaldehyde-treated sunflower meal (Su2). Nematode control regimes were: not drenched unless survival of individual animals was threatened (DrO); drenched according to a strategic drenching programme (Dr1); treatment with a controlled-release albendazole capsule (Dr2). Infections with Haemonchus contortus were suppressed by use of closantel. Due to drought conditions and lack of pasture growth, lucerne hay was fed to all sheep from Week 14 onwards (350 g per head per day, fed twice a week). Supplementation reduced the need for ‘survival drenching’ in Dr0 sheep considerably. Live-weight gain was increased significantly by supplementation with Su1 or Su2 during the 36-week experiment. Undrenched animals given Su1 or Su2 tended to grow faster than unsupplemented animals in the Dr1 and Dr2 groups. Greasy wool production and fibre diameter were increased by supplementation and anthelmintic treatment. Faecal worm egg counts (FEC) in undrenched sheep were significantly lower for Su1 and Su2 sheep than for Su0 sheep. There were no effects of supplementation on FEC in Dr1 or Dr2 sheep. Worm burden was generally unaffected by supplementation, while the drenching treatments Dr1 and Dr2 reduced worm burden at Week 16 and to a lesser extent at Week 27. Trichostrongylus colubriformis was the predominant nematode species, with smaller numbers of Nematodirus spp., Trichostrongylus vitrinus, Trichostrongylus axei and Ostertagia circumcincta also present. It was concluded that supplementary feeding with protein meal substantially reduced production losses attributable to nematode infections in young grazing sheep. This appears to be due to an enhanced resilience of the host, rather than any major changes in development of protective immunity.     

遗传标记及其在家禽育种中的应用

1 SNP SNP是染色体中遗传变异的最普通形式,如在人体已经检测基因组DNA中每1,000到2,000个单位有1个SNP,在某些区域估计每300个单位有一个SNP.基于SNP的高分辨率,遗传图谱在一些人的染色体上通常没有得到发展.正如其名称所指,SNP是发生在基因(启动子、外显子、或内含子)或基因之间(基因间隔区)的单个碱基改变或核苷酸变异.编码序列中的SNP以同义(不会导致氨基酸改变)或非同义(导致氨基酸改变)来分类.非同义SNP由于对蛋白质表达及最终对表现型的潜在影响而受到重视.相反,同义SNP可能对基因表达有微小的影响(除那些在启动子和其它基因组区域中,对DNA-蛋白质作重要的核苷酸或与RNA稳定性有关的核苷酸).同义和非同义SNP在基因图谱研究中均是很好的遗传标记.     

Laboratory and on‐farm evaluation of low‐cost salt mixtures for use during salinity acclimation and the nursery phase of Pacific white shrimp (Litopenaeus vannamei)

The current study evaluates the efficacy of a low‐cost salt mixture (LCSM) to replace expensive reconstituted sea salt (RSS) in the salinity acclimation and nursery phase of Pacific white shrimp under laboratory and farm conditions. LCSM was formulated to yield sodium, potassium, calcium and magnesium concentrations closely comparable to that of diluted seawater. Laboratory‐based nursery trials were conducted at 2, 6 and 15 g/L salinities, incrementally replacing RSS with LCSM (25%, 50%, 75% and 100%) at four replicates per treatment. Thirty postlarvae were reared for 7 days in 24‐L aquaria during the 2 and 6 g/L trials, while the nursery trial for 15 g/L salinity was conducted for 21 days with 400 postlarvae stocked in 150‐L tanks. On‐farm evaluation of LCSM was carried out in two tank‐based systems installed on levees adjacent to shrimp production ponds. RSS was incrementally replaced with LCSM (0%, 50%, 75% and 100%) and 100 postlarvae stocked into each 800‐L tank. Salinity acclimation was done from 30 g/L to 6 or 1.5 g/L within 2–3 days by pumping water from adjacent shrimp production ponds. Following salinity acclimation, the S4 system maintained flow‐through at 1.5 g/L, while N10 system was maintained static at 6 g/L salinity. At the conclusion, no significant differences were observed for either survival or growth of shrimp postlarvae between RSS and LCSM treatments at all salinities examined. Results reflect the potential use of LCSM to replace RSS, which could be an excellent solution to bring down the cost of production in inland shrimp aquaculture.