Spatial Inference of Nitrate Concentrations in Groundwater

We develop a method for multiscale estimation of pollutant concentrations, based on a nonparametric spatial statistical model. We apply this method to estimate nitrate concentrations in groundwater over the mid-Atlantic states, using measurements gathered during a period of 10 years. A map of the fine-scale estimated nitrate concentration is obtained, as well as maps of the estimated county-level average nitrate concentration and similar maps at the level of watersheds and other geographic regions. The fine-scale and coarse-scale estimates arise naturally from a single model, without refitting or ad hoc aggregation. As a result, the uncertainty associated with each estimate is available, without approximations relying on high spatial density of measurements or parametric distributional assumptions.     

Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response

In innate immune responses, activation of Toll-like receptors (TLRs) triggers direct antimicrobial activity against intracellular bacteria, which in murine, but not human, monocytes and macrophages is mediated principally by nitric oxide. We report here that TLR activation of human macrophages up-regulated expression of the vitamin D receptor and the vitamin D-1-hydroxylase genes, leading to induction of the antimicrobial peptide cathelicidin and killing of intracellular Mycobacterium tuberculosis. We also observed that sera from African-American individuals, known to have increased susceptibility to tuberculosis, had low 25-hydroxyvitamin D and were inefficient in supporting cathelicidin messenger RNA induction. These data support a link between TLRs and vitamin D-mediated innate immunity and suggest that differences in ability of human populations to produce vitamin D may contribute to susceptibility to microbial infection.     

Single-chain variable fragments antibody specific to <Emphasis Type="Italic">Corynespora cassiicola</Emphasis> toxin,cassiicolin, reduces necrotic lesion formation in <Emphasis Type="Italic">Hevea brasiliensis</Emphasis>

Corynespora leaf disease poses a serious threat to rubber cultivation because infected leaves develop necrotic lesions and abscise, leaving the tree unproductive. The destructiveness of Corynespora cassiicola has been largely attributed to cassiicolin, a protein toxin secreted by the fungus. Recombinant antibody technology offers hope to curtail the disease whereby single-chain variable fragments (scFv) specific to cassiicolin could bind and deactivate the toxin in genetically modified rubber trees that harbour the antibody gene. A scFv phage library was constructed from heavy and light variable chains of IgG from cassiicolin immunized Balb/C mice spleen. Biopanning of the phage library yielded a scFv clone with high specificity to cassiicolin. The nucleotide sequence and deduced amino acid sequence information of the scFv were obtained. Hemagglutinin (HA)-tagged scFv expressed in Escherichia coli is discerned as a band at ca. 30 kDa on SDS-PAGE, and the corresponding band was detected by anti-HA IgG on a Western immunoblot. Deactivation of cassiicolin by the affinity-purified scFv was demonstrated in a detached-leaf bio-assay on selected susceptible Hevea clones (PB 260, RRIM 2020, RRIM 901 and RRIM 929). The assay was also performed on clones that are relatively more resistant to the fungus (RRIM 600 and GT-1), and the results were as expected. Thus, we have successfully demonstrated that the cassicolin-specific scFv can effectively reduce cassicolin toxicity.     

Effect of long-term manuring and fertilizers on carbon pools,soil structure,and sustainability under different cropping systems in wet-temperate zone of northwest Himalayas

We investigated C management index (CMI; an indicator of sustainability of a management system and is based on total and labile C) and soil aggregation in medium-textured soils (silt loam and silty clay loam) under different cropping systems as follows: maize-wheat (M-W), rice-wheat (R-W), soybean-wheat (S-W), Guinea grass, and Setaria grass. Field experiments were 6–32 years long and were located in the wet-temperate zone of northwest Himalayas. The plant nutrients were applied through chemical fertilizers (urea, superphosphate, and muriate of potash) with or without organic materials (FYM, wheat straw, and Lantana spp.). The content of total C (C_T), labile C (C_L), CMI, mean weight diameter (MWD), and aggregate porosity varied significantly under different cropping systems. The range was 1.59 (R-W)–4.29% (Setaria) for C_T, 1.23 (R-W)–3.89 mg/kg (Guinea grass) for C_L, 52.09 (R-W)–129.77 (Guinea grass) for CMI, 0.90 (R-W)–5.09 (Guinea grass) for MWD, and 41.5 (R-W)–56.8% (S-W) for aggregate porosity. Aggregate porosity was highest (56.8%) under S-W, followed by grasses (50.1–51.2%), and M/R-W (41.5–50.0%). As per these data, (a) continuous use of N alone as urea lowered soil sustainability over control (no fertilizers); (b) use of NPK at recommended rates improved soil productivity over control; (c) the NPK + organic amendments further improved soil sustainability; and (d) the sustainability under different cropping systems followed the order: perennial grasses > soybean-wheat > maize-wheat > rice-wheat.     

Maturity and reproduction of goneplacid crab <Emphasis Type="Italic">Carcinoplax vestita</Emphasis> (Decapoda,Brachyura) in Tokyo Bay

ABSTRACT:     Sexual maturity, morphological sexual dimorphism, and reproduction of the goneplacid crab Carcinoplax vestita were investigated in Tokyo Bay, Japan, from November 2002 to October 2003. The puberty molt in males was evidenced by changes in the relative size of the chelipeds and merus of the walking legs, and was estimated to occur at a size range of 13.20–18.85 mm carapace length. Post-pubertal females were identified by the relative size of the abdomen and puberty was estimated to occur at a size range of 12.81–15.46 mm carapace length. Sexual dimorphism in C. vestita was observed in all features that showed secondary sexual characteristics. Monthly changes of gonad index in males, and of seminal receptacle index and occurrence of sperm plugs in females were synchronized, and indicated that mating was intense in spring. Ovaries began developing in March. Ovigerous females were found in all months except December, but were clearly more abundant between August and October. Fecundity ranged from 7800 to 57 000 mature oocytes per female per batch and was highly correlated with body size. The results suggest that some females may spawn more than one batch per year.     

Biodiversity and its fragility in Yunnan,China

In Yunnan, 8 major aspects of biodiversity and fragility in landforms, ecosystems, distribution populations, alien invasion, segregation, pollution and maladministration with various menace factors causing biodiversity loss have been described. It is revealed that the facts that the biodiversity and fragility coexists in this paper. Accordingly, 6 major countermeasures for effective conservation and rational utilization of the provincial biodiversity were suggested on the basis of the scientific development concepts, principles of nature protection, conservation biology, resource management and ethnobotany and present status in Yunnan with rich intangible resources such as climatic, ethnical and cultural diversity, etc.     

Agent-based land-use models: a review of applications

Agent-based modelling is an approach that has been receiving attention by the land use modelling community in recent years, mainly because it offers a way of incorporating the influence of human decision-making on land use in a mechanistic, formal, and spatially explicit way, taking into account social interaction, adaptation, and decision-making at different levels. Specific advantages of agent-based models include their ability to model individual decision-making entities and their interactions, to incorporate social processes and non-monetary influences on decision-making, and to dynamically link social and environmental processes. A number of such models are now beginning to appear—it is timely, therefore, to review the uses to which agent-based land use models have been put so far, and to discuss some of the relevant lessons learnt, also drawing on those from other areas of simulation modelling, in relation to future applications. In this paper, we review applications of agent-based land use models under the headings of (a) policy analysis and planning, (b) participatory modelling, (c) explaining spatial patterns of land use or settlement, (d) testing social science concepts and (e) explaining land use functions. The greatest use of such models so far has been by the research community as tools for organising knowledge from empirical studies, and for exploring theoretical aspects of particular systems. However, there is a need to demonstrate that such models are able to solve problems in the real world better than traditional modelling approaches. It is concluded that in terms of decision support, agent-based land-use models are probably more useful as research tools to develop an underlying knowledge base which can then be developed together with end-users into simple rules-of-thumb, rather than as operational decision support tools. This paper arises from research conducted as part of the UK Research Councils’ RELU Programme (award number RES-224-25-0102). RELU is funded jointly by the Economic and Social Research Council, the Biotechnology and Biological Sciences Research Council and the Natural Environment Research Council, with additional funding from the Department for Environment, Food and Rural Affairs and the Scottish Executive Environment and Rural Affairs Department.     

Production and use of maize seed for sowing in Bolívar,Ecuador

In the province of Bolívar in the Andean region 212 farmers, six salesmen and 14 technicians, involved in maize production, were interviewed. The majority of the farmers interviewed were small-holders; 64% of the farmers had a farm size of less than 4.5 ha. Maize is the most important crop and is often grown in association with beans. Most maize, 96%, is soft maize meant for human consumption. The cultivars grown are open pollinated ones. One cultivar, ‘Guagal’, was grown extensively. A few others, among which an improved version of Guagal were of some importance. In the production of maize the farmers consider damage due to insects, wind (lodging), diseases, drought and hail, the low prices for their surplus maize and the high costs of fertilizers, chemicals, sowing seed and labour as the most important constraints. The seed for sowing the next crop mainly came from seed kept from the last harvest. Farmers indicated that they select from the harvested ears the healthy looking larger ones. Kernel type also was a selection criterion. Selection for plant type in the field was rarely done. Of the farmers 71% stored the maize as kernels while 29% stored the seed kept on the ears. The storage was predominantly done somewhere in the house in plastic (56%) or cloth bags (14%), in a pile (13%), just on the floor (4%) or in cans (4%). Some farmers still had seed left from the last sowing and were willing to give a sample for testing. From 32 such samples the quality was assessed by INIAP, the Ecuadorean governmental research and breeding organisation. The samples were consistently of a low quality. Especially the vigour of the seedlings was poor and most of the seeds were infected or contaminated by fungi. In the region a few salesmen offer maize seed for sale of cultivar Guagal at prices affordable by the farmer. Of improved cultivars the prices were higher than most farmers are willing to pay. The technicians considered good seed quality and good maintenance of the cultivars effective methods in obtaining better yields. Many farmers do not have access to seed of INIAP and are not familiar with the improved cultivars.