Modulation of gut microbiota associated with abalone Haliotis gigantea by dietary administration of host-derived Pediococcus sp. Ab1

In the present study, we evaluated how dietary administration of host-derived Pediococcus sp. Ab1 has an effect on the abalone gut microbiota using a culture-dependent method and 16S rRNA gene library analysis. The culturable lactic acid bacteria number in the probiotic sample was 10⁵ higher than that in the non-probiotic sample, and we speculate that this significant increase was due to colonization of Ab1 into abalone gut. The result of a culture-dependent method showed that the proportion of Vibrio halioticoli clade, which is known to be a beneficial resident bacterium to abalone, was much higher in the probiotic sample than in the non-probiotic sample. 16S rRNA gene clone sequences revealed that gut microbiota in the probiotic sample was obviously diverse compared to the non-probiotic sample, probably due to improvement of the gut environment by Ab1 colonization. In addition, some beneficial bacteria–like sequences such as V. halioticoli were only found in the probiotic sample. These results suggest that the dietary administration of Ab1 to abalone gut has a great effect on modulation of not only culturable but also unculturable gut microbiota. Our results are useful for future investigations into understanding the effect of probiotics on gut microbiota.     

Fine root decomposition in tropical dry evergreen and dry deciduous forests in Thailand

Dry evergreen forest (DEF) and dry deciduous dipterocarp forest (DDF) are major forest types extensively distributed in northeastern Thailand, exhibiting different nutrient cycling properties. This study aims to improve our understanding on the pattern of mass loss and nitrogen release from two categories of roots (fine, <2 mm and small, 2–5 mm) of Hopea ferrea at DEF and fine roots of mixed trees and dwarf bamboo (Arundinaria pusilla) at DDF sites. Decomposition experiment was performed for more than 12 months using buried litter bag technique. Initial chemistry was significantly different among the four root litters; fine root of H. ferrea exhibited a low ratios of C:N and acid-insoluble:N. The fine root of dwarf bamboo was characterized by high contents of total carbohydrate and ash. Decomposition rate constants (year⁻¹) of ash-free weight remaining were 1.27 and 0.55 for fine and small roots of H. ferrea, and 0.73 and 0.66 for fine root of mixed trees and dwarf bamboo, respectively. At the end of the experiment, the N concentration in fine and small roots of H. ferrea increased to 1.5 times the initial concentration. Whereas, N mass of dwarf bamboo decreased during the experiment. This suggests a different pattern of root decomposition and N release in two forest ecosystems. Generally, the fine root decomposition was faster in the DEF than in the DDF. The role of initial litter chemistry was more pronounced than the climatic seasonality on the belowground decomposition pattern in our study.     

新疆冬小麦地方品种高分子量麦谷蛋白亚基的地理分布及其新发现亚基的特性

[目的]和方法]为了揭示新疆小麦地方品种高分子量谷蛋白亚基( HMW - GS)的遗传多样性,对新疆北部地区(北疆)、东部地区(东疆)和南部地区(南疆)小麦地方品种HMW - GS的分布进行了研究.[结果]研究表明:新疆小麦地方品种HMW - GS等位变异的分布与其地理来源具有密切关系,除Glu - B1位点外,Glu -A1和Glu - D1位点等位变异在北部地区、东部地区和南部地区的分布频率存在显著差异.在Glu - A1位点,Glu - A1c编码的亚基出现的频率最高,其次是Glu - A1b编码的2*亚基;但在北部地区,几乎所有品种都含有Glu -A1c编码的亚基,仅有1个品种含有Glu-A1b编码的2*亚基.在Glu - B1位点,新疆大多数小麦地方品种含有Glu -B1b编码的7+8亚基.在Glu - D1位点,新发现的等位基因Glu -D1bp(t)编码的2.6亚基在东疆和南疆出现的频率较高,但在北疆出现的频率最低,分别为91;(东疆),61;(南疆),19;(北疆);等位基因Glu - D1bp(t)在南疆冬小麦地方品种中普遍存在.然而,北疆是以等位基因Glu - D1a编码的2+12亚基为主,其频率为83;.关于Glu - D1bp(t)的起源,推测可能是在南疆地区自然突变产生,然而由于南疆和东疆荒漠化造成的地理阻碍使其向北疆传播的概率较低,同时抑制了该基因向东亚地区的迁移.[结论]基于DNA序列的氨基酸序列比对,发现Glu -D1bp(t)编码的2.6亚基与Glu - D1al编码的2.2*亚基非常相似.     

School for learning: sharing and transmission of feeding information in jack mackerel <Emphasis Type="Italic">Trachurus japonicus</Emphasis> juveniles

We aimed to evaluate the effect of social interaction on learning in juvenile jack mackerel Trachurus japonicus. We first compared the learning process between single fish and groups of fish. Reward-conditioned learning was established in eight trials in both treatments, whereas individuals in the group treatment responded to stimuli more frequently in the feeding area than in the single fish. This implies that information about the feeding area was shared in the group and pursuing other individuals gave them a behavioral advantage for feeding. We then investigated whether information on the feeding area can be transmitted through observation of other individuals in aligned tanks. Fish in the control group required six trials to be conditioned to aeration stimuli and feeding location, whereas those in the observation treatment required only three trials for this learning. This result implies that information on the feeding area was transmitted through visual observations. The present research suggests that sharing and transmission of information occur in schools of jack mackerel. Schooling behavior would thus enable optimization of the foraging behavior in this species.     

Quantum phase transition in organic charge-transfer complexes

A phase transition in an organic charge-transfer complex, which originates from the neutral-ionic valence instability, can be tuned toward zero kelvin with use of external pressure or chemical modification as a control parameter. The phase diagram and observed dielectric behaviors are typical of quantum paraelectricity, yet this zero-kelvin transition point namely, the quantum critical point, accompanies large quantum fluctuation of the molecular charge, as demonstrated by the molecular vibrational mode spectra. The result indicates that the pi-electron transfer between donor and acceptor molecules is coupled with the zero-point lattice dynamics around the quantum critical point.     

Estimation of aboveground biomass in mangrove forests using high-resolution satellite data

Mangroves play important roles in providing a range of ecosystem services, mitigation of strong waves, protection of coastlines against erosion, maintenance of water quality, and carbon sink in the context of global warming. For trees in mangrove forests in southern Ranong Province, Thailand, we investigated the allometric relationship between crown area derived from high-resolution satellite data and stem diameter and used the resulting model to estimate aboveground biomass. We used QuickBird panchromatic and multispectral data acquired for the study area on 15 October 2006 as the high-resolution satellite data. Individual tree crowns were extracted from the satellite image of panchromatic data by using the watershed method, and the species were identified by using the maximum-likelihood method for the multispectral data. Overall classification accuracy for species identification was 88.5 %. The biomass derived from our field survey was plotted against aboveground biomass in the sample plots, estimated from the QuickBird data. The regression line through the origin between the satellite-estimated biomass and biomass based on the field data had a slope of 1.26 (R ² = 0.65). Stand aboveground biomass estimated from the high-resolution satellite data was underestimated because of a lack of data on the biomass of suppressed trees and inappropriate segmentation of crowns of large trees into two or more trees.     

Existence of a 400 kDa glycoprotein in the dermis of sea cucumber Apostichopus armata: partial purification and characterization

A large size (400 kDa) non-collagenous protein was detected as a major component in the extract, with neutral salt solution, from the dermis of sea cucumber Apostichopus armata. On SDS-PAGE analysis, the 400 K component shifted to a lower molecular weight component (about 200 K) by reduction with 2-mercaptoethanol, and they were both reactive for periodic acid-Schiff (PAS) reaction staining. From these results, this protein was suggested to be a glycoprotein consisting of disulfide-bonded two subunits with almost equal molecular weight (200 K). In addition to relatively high contents (>100/1,000 residues) of aspartic and glutamic acids, cysteine was also detected (6.1/1,000 residues) in amino acid analyses of this protein partially purified by anion-exchange column chromatography. These combined results suggest the structural similarity of the 400 K component to fibronectins from other vertebrate and invertebrate animals.     

Single spaghetti tagging as a high-retention marking method for Japanese common sea cucumber <Emphasis Type="Italic">Apostichopus japonicus</Emphasis>

Populations of sea cucumbers, including the Japanese common sea cucumber Apostichopus japonicus, have been seriously depleted worldwide due to overfishing. Mark–recapture study is an efficient means of collecting ecological data. However, the use of such a method in sea cucumbers is difficult because they lack hard tissues in the body wall. Here we tested the viability of various tagging methods on A. japonicus. First, we applied conventional tags using four different methods [single spaghetti (T-bar) tagging, double spaghetti tagging, ribbon tagging, and Atkins tagging] to ten individuals per method in aquaria for 14 days. Of the methods used, single spaghetti tagging had the highest retention rate. Then we examined the retention rate of single spaghetti tags on ten individual sea cucumbers for up to approximately 6 months in rearing conditions. The single spaghetti tagging method showed a retention rate of 100% over at least 7 days, and 50% of the tags remained embedded after 56 days. The longest duration of tag retention was 174 days, at which time the experiment was terminated. These results indicate that single spaghetti tagging is reliable for both short- and longer-term studies, making it a useful tool for ecological and conservation studies in sea cucumbers.     

Ontogeny of tolerance to and avoidance of ultraviolet radiation in red sea bream Pagrus major and black sea bream Acanthopagrus schlegeli

ABSTRACT:   Ontogenetic changes of tolerance to, and avoidance of, ultraviolet-B radiation (UV-B) were examined in red sea bream Pagrus major and black sea bream Acanthopagrus schlegeli . In the tolerance experiment, larvae and juveniles (age 13–46 days) were put in beakers, and were exposed to one of five different levels of UV-B radiation (1.8, 1.1, 0.2, 0.1, and 0 W/m²) for one hour. Their survival rates were calculated either 12 or 24 h later. In the avoidance experiment, fish (age 3–49 days) were put in a long experimental tank, half of which was covered with UV-blocking film and placed under two levels of UV-B radiation (1.1 and 0.2 W/m²), and their avoidance indices were calculated. Black sea bream had significantly better survival compared to red sea bream for most ages. Only black sea bream of ages 37 and 49 days showed significant avoidance of UV radiation under the higher level of UV-B, whereas both species did not show avoidance on any days at the lower level. The present results suggest that black sea bream are significantly better adapted to habitats with high UV-B radiation, than red sea bream, reflecting that back sea bream live in shallower waters through their early life stages.     

Specific Glu‐D1ƒ Allele Frequency of Japanese Common Wheat Compared with Distribution of Glu‐1 Alleles in Chinese Wheat

The quality of wheat (Triticum aestivum L.) grain favored in breadmaking is strongly affected by components of seed storage protein, particularly high molecular weight glutenin subunits (HMW‐GS). The HMW‐GS 2.2 controlled by the Glu‐D1ƒ allele is frequently found in Japanese cultivars and landraces. In the investigation into the factors affecting the distribution of the allele, the available data on HMW‐GS of common wheats from Japan were analyzed and compared with the data for intensity of winter habit and wheat flour hardness. We show that the main factors affecting the Glu‐D1ƒ allele frequency in Japanese wheat were the intensity of natural selection for winter habit and artificial selection for flour hardness. According to a study of the worldwide distribution of Glu‐1 alleles, the Glu‐D1ƒ allele is rare. However, Glu‐D1ƒ allele was the most common Japanese wheat seed storage protein allele. It is well known that Chinese wheat contributed to Japanese landraces, and Japanese landraces contributed to modern cultivars from Japan. However, common Japanese and Chinese wheats differ in the frequencies of Glu‐D1ƒ allele. These results may be explained either by the founder effect or by a selective bottleneck in Japanese common wheat genetic resources.