Interlaboratory evaluation of a real-time multiplex polymerase chain reaction method for identification of salmon and trout species in commercial products

This interlaboratory study evaluated a real-time multiplex polymerase chain reaction (PCR) method for identification of salmon and trout species in a range of commercial products in North America. Eighty salmon and trout products were tested with this method by three independent laboratories. Samples were collected in the United States and Canada, and only the collecting institution was aware of the species declaration. Following analysis with real-time PCR, all three laboratories were able to identify species in 79 of the 80 products, with 100% agreement on species assignment. A low level of fraud was detected, with only four products (5%) found to be substituted or mixtures of two species. The results for two of the fraudulent products were confirmed with alternate methods, but the other two products were heavily processed and could not be verified with methods other than real-time PCR. Overall, the results of this study show the usefulness and versatility of this real-time PCR method for the identification of commercial salmon and trout species.     

Barley mutants with enhanced level of resistance to Swedish isolates of Bipolaris sorokiniana,casual agent of spot blotch

Spot blotch, caused by Bipolaris sorokiniana, has become an increasingly important disease on barley in Sweden. In order to enhance our knowledge of this disease, eight Swedish B. sorokiniana isolates were assessed for their virulence pathotype on 30 barley genotypes including eight lines of mutant origin, designated B. sorokiniana tolerant (bst). A leaf screen assay revealed the presence of virulence groups 1 and 7 in Sweden. Several mutant genotypes demonstrated enhanced resistance responses (P = 0.0001), of which bst1:3 had the lowest leaf scoring value to the most virulent isolate, Swe2 (virulence group 7). To evaluate the host root responses, two contrasting isolates Swe2 and Swe4 (virulence group 7 and 1) were used to inoculate a set of eight differential lines, including four promising mutant lines from the leaf screen. Mutant bst1:6 was significantly less susceptible (P = 0.001) compared with the other barley genotypes tested, independent of the two isolates used. Mutants bst1, bst1:3 and bst1:4, which displayed less or no spots, are also considered promising genotypes for further breeding attempts.     

Plagiotropism and auxin in Abies nordmanniana

Main branches of Abies nordmanniana Spach. were examined through their first growth season from subapical buds around the leader bud to fully expanded shoots. Plagiotropism was evident in branch orientation, which was almost horizontal, as well as in the orientation of buds developing on the branches. Auxin transport capacity was predominantly basipetal (> 90%) and consistently higher in the middle part of the branch than in the distal and proximal ends. Auxin transport capacity was higher on the dorsal side of the branch during the short initial hyponastic growth phase, but the difference disappeared when the branch became horizontal. No dorsal-ventral differences could be detected in young horizontal branches in concentrations of indole acetic acid, cytokinins, gibberellins or abscisic acid. Branch orientation was unaffected by decapitation of the leader apex or by decapitation and replacement with exogenous auxin. However, decapitation resulted in a less plagiotropic bud arrangement on the branches, and auxin application to the leader bud scar counteracted this effect. Thus, a signal originating in the stem seems to be involved in regulating branch bud positioning, whereas the horizontal branch orientation must rely on a different mechanism, presumably autonomic within the branch.     

Prespawning migratory behaviour and spawning success of sea-ranched Atlantic salmon, Salmo salar L., in the River Gudenaa, Denmark

The migratory behaviour of sea-ranched Atlantic salmon, Salmo salar L., was analysed by radio-telemetry in the River Gudenaa, Denmark. The main objectives were to: (1) estimate mortality of returning adults through the fjord; (2) observe rate of progression and migratory pattern in the fjord and river; and (3) record whether spawning occurs in the river. Forty-two returning salmon (19 males and 23 females of total body length from 60–97 cm) reared and released as smolts, were caught and equipped with external radio transmitters in the outer estuary of the River Gudenaa in 1994 and 1995. Of the tagged salmon, 18 (43%) were caught in the estuary, four (10%) were not recorded after release and 20 (47%) entered the river. The mean rate of progression through the fjord was 7.6 km d−1 (range 1.4–18.2) in 1994 and 5.4 km  d−1 (range 1.6–17.1) in 1995. Eleven salmon were alive at the onset of the spawning period. Eight were retrieved dead from the river during or after the spawning period; four with empty gonads assumed to be successful spawners, and four with intact gonads. In 1994, unsuccessful spawners (found dead with intact gonads) entered the river earlier and had a longer total migration distance in the river compared to successful spawners. This suggests that spawning success of sea-ranched salmon is associated with time of river entry and river migration length.     

Disseminated panniculitis in a bottlenose dolphin (Tursiops truncatus) due to Mycobacterium chelonae infection

A 14-year-old female bottlenose dolphin was diagnosed with mycobacterial panniculitis based on punch biopsy specimens. The necropsy revealed numerous pyogranulomas in the blubber, as well as marked acute multifocal necrosuppurative pneumonia and lymphadenitis. In addition, the animal had marked scoliosis, which had first been noted clinically in the dolphin at about 1 mo of age. The animal had been treated with low-dose dexamethasone for approximately the last 19 mo to reduce perceived discomfort from spondyloarthritis and with the progestational agent altrogenest for approximately 8 yr to prevent pregnancy. Acid-fast positive bacilli were detected in the dermis but not in lung or lymph nodes. Mycobacterium chelonae was isolated from pooled skin, lung, and peripheral lymph-node tissue. Mycobacterial infection may be considered as a differential diagnosis in bottlenose dolphins with generalized cutaneous inflammation, particularly if chronic steroid and progesterone treatments were administered, both of which may have an immunomodulatory effect.     

Physical activity, diet and gene-environment interactions in relation to body mass index and waist circumference: the Swedish young male twins study

OBJECTIVE: The aim of the present study was to examine the relationships between genetic susceptibility to obesity, physical activity (PA), dietary fibre, sugar and fat intakes and 4-year changes in body mass index (BMI) and attained waist circumference (WC) in a cohort of 287 monozygotic and 189 dizygotic young adult male twin pairs. Increased knowledge about interactions between genes and environment may provide insight into why some individuals are more prone to obesity than others. DESIGN: Information about PA, BMI, dietary habits, WC and potential confounders was collected by questionnaire in 1998 and 2002. The cohort data were analysed by mixed linear models. RESULTS: Twins with low PA attained larger WC than twins with high PA (difference 2.5 cm; 95% confidence interval (CI) 1.3, 3.6). The twins with the lowest fibre intake were found to have attained the highest WC and to have increased most in BMI (difference between highest and lowest fibre intakes: 1.6 cm, 95% CI 0.4, 2.9 and 0.45 kg m(-2), 95% CI 0.15, 0.76, respectively). Furthermore, our results suggested the presence of interactions so that twins with genetic susceptibility to obesity were more prone to have larger WC if sedentary than twins without genetic susceptibility. CONCLUSION: PA and a diet rich in fibre may be protective against weight gain among younger adult men. An interaction between PA, genes and attained WC is a novel finding which needs confirmation by other studies.     

Klebsiella to Salmonella gene transfer within rumen protozoa: implications for antibiotic resistance and rumen defaunation

The rumen has long been thought to be a site of gene transfer for microorganisms. Rumen protozoa (RPz) are active predators of bacteria that can harbor antibiotic resistance genes. In this study, RPz were assessed as sites of gene transfer between two bacterial species, Salmonella and Klebsiella. One Klebsiella isolate carried a plasmid bearing bla(CMY-2), encoding an extended-spectrum beta-lactamase conferring ceftriaxone resistance, while the Salmonella was susceptible to ceftriaxone yet capable of thriving within protozoa. In vitro studies revealed that ceftriaxone-resistant Salmonella could be isolated following co-incubation of Salmonella and Klebsiella with RPz obtained from adult cattle and goats. Ceftriaxone-resistant Salmonella were not recovered in the presence of an inhibitor of protozoa engulfment or when a protozoa-sensitive Salmonella was part of the co-incubation. This transfer event was additionally observed in vitro for protozoa-independent stressors although at a significantly lower frequency. The gene transfer event was related to bacterial conjugation since a conjugation inhibitor, nalidixic acid, perturbed the phenomenon. Ceftriaxone-resistant Salmonella were recovered from calves, sheep, and goats co-challenged with ceftriaxone-resistant Klebsiella and ceftriaxone-sensitive Salmonella. However, the transfer event was not observed in calves and sheep that were defaunated prior to the co-challenge. Moreover, Salmonella transconjugants were isolated from separate bovine in vivo studies involving a Klebsiella donor carrying a plasmid conferring colicin activity while no such transconjugants were obtained from defaunated calves. These results provide an important basis for evaluating and preventing the spread of antibiotic resistance and other selective advantages for pathogens present in ruminants.     

Clovis age Western Stemmed projectile points and human coprolites at the Paisley Caves

The Paisley Caves in Oregon record the oldest directly dated human remains (DNA) in the Western Hemisphere. More than 100 high-precision radiocarbon dates show that deposits containing artifacts and coprolites ranging in age from 12,450 to 2295 (14)C years ago are well stratified. Western Stemmed projectile points were recovered in deposits dated to 11,070 to 11,340 (14)C years ago, a time contemporaneous with or preceding the Clovis technology. There is no evidence of diagnostic Clovis technology at the site. These two distinct technologies were parallel developments, not the product of a unilinear technological evolution. "Blind testing" analysis of coprolites by an independent laboratory confirms the presence of human DNA in specimens of pre-Clovis age. The colonization of the Americas involved multiple technologically divergent, and possibly genetically divergent, founding groups.     

Aerial Transmission of Thielaviopsis basicola, a Pathogen of Corn-Salad, by Adult Shore Flies

ABSTRACT Chlamydospores of Thielaviopsis basicola were consistently observed in frass excreted by adults and larvae of shore flies that were collected in the immediate vicinity of naturally infected corn-salad plants obtained from a commercial greenhouse production facility. Approximately 95% of the adult flies and 85% of the larvae were internally infested with the pathogen. Pathogen-free adult shore flies were subsequently shown to acquire the pathogen by ingestion after feeding on naturally infected plants. Viable propagules of the pathogen were excreted by these internally infested adults and were capable of transmitting the pathogen to healthy seedlings, which subsequently became infected.