Optical characteristic of humic acids from lake sediments by excitation-emission matrix fluorescence with PARAFAC model

Journal of Soils and Sediments - The study aimed to find out whether fluorescence parameters of humic acids (HA), obtained from excitation-emission matrix (EEM) fluorescence spectra, could be used...     

Fructan-Enriched Diet Increases Bone Quality in Female Growing Rats at Calcium Deficiency

This study was designed to determine the effect of feeding female rats with low-calcium diet containing one of three fructan sources (Jerusalem artichoke, yacon, Beneo Orafti Synergy1), on selected bone parameters. Growing Wistar rats were fed modified AIN-93 G diet enriched in fructan sources (8%), added alone or as a strawberry sorbet ingredient. Two of eight groups were a validation model, where the positive control group was fed with recommended calcium dose in the diet (RCD), and negative one – with low calcium diet (LCD). After 12 weeks, femoral Ca content, bone densitometry, architecture and hardness were examined. The positive effects on femoral Ca content and cortical thickness, area and content in distal part of bone was observed after feeding animals diet enriched in Jerusalem artichoke sorbet. Beneficial action on other bone tomographic parameters (particularly trabecular volumetric bone mineral density) in this part of femur were associated mainly with the consumption of the diet with sorbet containing yacon. Our results showed an important role of diet containing frozen strawberry desserts enriched in fructan sources in the maintenance of healthy bones of growing organism. It may suggest possible synergisms between fructans and bioactive substances of strawberry.     

Evaluation of zebrafish (Danio rerio) as an animal model for the viral infections of fish

Zebrafish (Danio rerio) is a laboratory model organism used in different areas of biological research including studies of immune response and host–pathogen interactions. Thanks to many biological tools available, zebrafish becomes also an important model in aquaculture research since several fish viral infection models have been developed for zebrafish. Here, we have evaluated the possible use of zebrafish to study infections with fish viruses that have not yet been tested on this model organism. In vitro studies demonstrated that chum salmon reovirus (CSV; aquareovirus A) and two alloherpesviruses cyprinid herpesvirus 1 (CyHV‐1) and cyprinid herpesvirus 3 (CyHV‐3) are able to replicate in zebrafish cell lines ZF4 and SJD.1. Moreover, CSV induced a clear cytopathic effect and up‐regulated the expression of antiviral genes vig‐1 and mxa in both cell lines. In vivo studies demonstrated that both CSV and CyHV‐3 induce up‐regulation of vig‐1 and mxa expression in kidney and spleen of adult zebrafish after infection by i.p. injection but not in larvae after infection by immersion. CyHV‐3 is eliminated quickly from fish; therefore, virus clearing process could be evaluated, and in CSV‐infected fish, a prolonged confrontation of the host with the pathogen could be studied.     

Pathogenic and genetic diversity of Puccinia triticina from triticale in Poland between 2012 and 2015

Variation among Puccinia triticina isolates collected from triticale in Poland between 2012 and 2015 was studied based on virulence and simple sequence repeat (SSR) markers. Two hundred and forty-two single-uredinial isolates from four geographically separated locations were tested for virulence against 33 near-isogenic Thatcher lines containing known Lr resistance genes, and their molecular genotypes were characterized with 34 SSR markers. Structure and relationships of the regional and annual populations of P. triticina were analysed using an assignment-based approach for both the virulence and SSR data. The molecular marker analysis was based on two different models of SSR evolution: the stepwise mutation model with a variable mutation rate (SMMv) and the infinite alleles model (IAM). A highly significant deviation from Hardy–Weinberg equilibrium among SSR genotypes, a high proportion of heterozygotes, and a moderate association of relationships between virulence phenotypes and SSR genotypes were consistent with the occurrence of clonal lineages of related races within the population. While the results suggest that genetic drift and mutation affect variation within the pathogen population, it seems that migration has the most significant role in shaping the population structure of P. triticina occurring on triticale in Poland.     

Study on parameterisation of plant tissue microstructure by confocal microscopy for finite elements modelling

This paper reviews three different methods for parameterisation of plant tissues which can be applied to images obtained with a confocal scanning laser microscope to create models for the simulation of the mechanical behaviour of biological cellular structures. Vectorisation, Voronoi tessellation and ellipse tessellation were tested. Potato tuber and carrot parenchyma were chosen as examples. For each method tested, five geometrical parameters were analysed: area, perimeter, orientation, elongation and a local indicator of spatial association of all individual regions which represented cells. The reconstruction accuracy of the original tissue microstructure by each parameterisation method was investigated by the comparison of the geometrical properties of the cells from the segmentation with their virtual equivalents. Linear regression models between the reference and modelled parameters were built. The model performance was expressed in terms of the coefficient of determination (R²), the slope of the regression line and the root mean square errors for prediction (RMSEP). Based on the results, Voronoi tessellation was considered to be inaccurate for tissue modelling. The vectorisation procedure only allowed for reproduction of the general shapes of cells, and the curvature of cell walls was neglected in this method. For both the Voronoi tessellation as well as vectorisation, created cells completely filled the space with no additional gaps and possessed sharp, angular shapes. The best overall reconstruction accuracy was obtained with ellipse tessellation. Models created with this method can be considered as representative equivalents of real tissues in terms of cell area, orientation, perimeter, shape and spatial arrangement.     

Genetic parameters and selection of maize cultivars using Bayesian inference in a multi-trait linear model

Variance components must be obtained to estimate genetic parameters and predict breeding values. In studies which take many traits into account, it is reasonable to use the Bayesian approach for the estimation of genetic parameters. The main goal of the present research was not only to consider the genetic correlations of the examined traits, but above all to estimate unknown genetic parameters and to gain profits from the selection. Bayesian inference was also useful for the selection of the best maize varieties. It was applied to predict genetic values in the multi-traits linear model. Thirteen maize cultivars representing the traits of our interest were studied by means of Bayesian inference. The traits are the number of plants before harvest, the grain yield, the length of the ears, the mass of leaves and the number of ears. The experiment involved a randomised block design with four replications and ten plants per plot. The highest correlation estimates were found between the number of plants before harvest and the number of ears, jointly with the grain yield and the number of ears. Lower correlation estimates were found between the length of the ears and the number of ears as well as the grain yield and the length of the ears. The research confirms that the best varieties to be grown are: Clarica, NK Cooler, Drim and PR 39K13. The Bayesian approach proved to be useful in selection studies, which can further be used to improve the studied genotypes.     

High affinity of cadmium and copper to head kidney of common carp (Cyprinus carpio L.)

The aim of the present study was to evaluate bioaccumulation of metals in various tissues of the freshwater fish Cyprinus carpio L. exposed to cadmium and copper (a xenobiotic and a microelement). The fish were subjected to short-term (3 h, Cd-S and Cu-S) or long-term (4 weeks, Cd-L and Cu-L) exposures to 100 % 96hLC₅₀ or 10 % 96hLC₅₀, respectively. Blood, gill, liver, head and trunk kidney were isolated weekly from 5 fish of each group for 4 weeks (post-short-term exposure and during long-term exposure). Atomic absorption spectrophotometry technique was applied to measure concentrations of metals (Cd and Cu) in fish tissues. Initial concentrations of copper in fish tissues were higher than levels of cadmium. Cadmium and copper levels increased in all tissues of metal-exposed fish. After short-term exposures (at higher concentration) and during long-term exposures (at lower concentration), similar changes in metal concentrations were observed. The values of accumulation factor (ratio of final to initial metal concentration) were higher for cadmium as compared to copper. Comparison of metal levels and accumulation factors in various tissues revealed that cadmium and copper showed very high affinity to head kidney of common carp (higher than to other tissues), but accumulation factors for cadmium in trunk, head kidney and liver were much higher than for copper. The concentrations of copper in organs of Cu-exposed fish increased only slightly and quickly returned to the control level, which shows that fish organism easily buffered metal level. On the other hand, concentrations of cadmium considerably increased and remained elevated for a long time which suggests that activation of mechanisms of sequestration and elimination of cadmium required more time.     

Cytogenetic and histological studies of the brook trout, Salvelinus fontinalis (Mitchill), and the Arctic char, S. alpinus (L.) hybrids

Although brook trout and the Arctic char hybrids are able to reproduce, individuals with decreased fertility or even fish that are unable to produce any gametes have been also described. Abnormal gonadal development and disturbances in the gamete production in the char hybrid offspring may be triggered by the odd chromosome number and disturbances in their pairing during meiosis. To verify this hypothesis, cytogenetic examination and the gonadal histology analysis of the brook trout x Arctic char hybrids were carried out. Diploid chromosome number in the studied char (F₁) hybrids varied from 82 to 84 (FN = 99–102). Among 28 hybrids, 12 males, three females, nine intersex individuals and two sterile specimens were described. In the case of two individuals, gonads were not found. Diploid chromosome numbers in the males and intersex individuals varied from 82 to 84. Chromosome numbers in the females were 82 and 83 chromosomes. Two sterile fish exhibited karyotypes composed of 82 and 84 chromosomes. Predominance of the ovarian component in the intersex gonads and gonadal sex ratio distortion towards the males suggested hybrid females had problems with gonadal differentiation. However, the lack of the clear relationship between chromosome number and gonadal development in the studied hybrids did not support our hypothesis that odd chromosome number may be responsible for such reproductive disturbances in the hybrid individuals. We have presumed that sterility and intersexual development of the gonads may be caused by interactions between brook trout and Arctic char genes on the sex chromosomes and autosomes rather than unpairing of the parental chromosomes.