RADIX: rhizoslide platform allowing high throughput digital image analysis of root system expansion

Background

Phenotyping of genotype-by-environment interactions in the root-zone is of major importance for crop improvement as the spatial distribution of a plant’s root system is crucial for a plant to access water and nutrient resources of the soil. However, so far it is unclear to what extent genetic variations in root system responses to spatially varying soil resources can be utilized for breeding applications. Among others, one limiting factor is the absence of phenotyping platforms allowing the analysis of such interactions.

Results

We developed a system that is able to (a) monitor root and shoot growth synchronously, (b) investigate their dynamic responses and (c) analyse the effect of heterogeneous N distribution to parts of the root system in a split-nutrient setup with a throughput (200 individual maize plants at once) sufficient for mapping of quantitative trait loci or for screens of multiple environmental factors. In a test trial, 24 maize genotypes were grown under split nitrogen conditions and the response of shoot and root growth was investigated. An almost double elongation rate of crown and lateral roots was observed under high N for all genotypes. The intensity of genotype-specific responses varied strongly. For example, elongation of crown roots differed almost two times between the fastest and slowest growing genotype. A stronger selective root placement in the high-N compartment was related to an increased shoot development indicating that early vigour might be related to a more intense foraging behaviour.

Conclusion

To our knowledge, RADIX is the only system currently existing which allows studying the differential response of crown roots to split-nutrient application to quantify foraging behaviour in genome mapping or selection experiments. In doing so, changes in root and shoot development and the connection to plant performance can be investigated.

     

Epidemiology of Haemophilus somnus infection in dairy cattle in Quebec.

Serological studies on Haemophilus somnus infection were carried out on 1795 cattle from 231 dairy herds in the province of Quebec. An epidemiological investigation was done in each of the dairy operations. Seroreactivity rate and mean log2 titer for all the sera were 55.4% and 4.1620 respectively. Cattle from eastern regions of Quebec demonstrated the lowest prevalence of H. somnus agglutinins. The percentage of seroreactor animals was 60.3 in herds of 100 cattle or more in comparison to 53.2 in herds of smaller size. About 75% of the animals from 16 herds in which one or more cattle showed nervous manifestations of undetermined origin over a one year period had antibodies to H. somnus. Herds in which respiratory diseases occurred had 59.6% seroreactor animals and herds in which weak calf syndrome was diagnosed over a one year period had 61.4% seroreactor animals. In 87 herds located within 20 km of feedlots, 61.8% of the sera had titers and the mean log2 titer was 4.4813.     

Microbial indicators for soil quality

The living soil is instrumental to key life support functions (LSF) that safeguard life on Earth. The soil microbiome has a main role as a driver of these LSF. Current global developments, like anthropogenic threats to soil (e.g., via intensive agriculture) and climate change, pose a burden on soil functioning. Therefore, it is important to dispose of robust indicators that report on the nature of deleterious changes and thus soil quality. There has been a long debate on the best selection of biological indicators (bioindicators) that report on soil quality. Such indicators should ideally describe organisms with key functions in the system, or with key regulatory/connecting roles (so-called keystone species). However, in the light of the huge functional redundancy in most soil microbiomes, finding specific keystone markers is not a trivial task. The current rapid development of molecular (DNA-based) methods that facilitate deciphering microbiomes with respect to key functions will enable the development of improved criteria by which molecular information can be tuned to yield molecular markers of soil LSF. This review critically examines the current state-of-the-art in molecular marker development and recommends avenues to come to improved future marker systems.     

Phytopathogenic fungi new for southern Anatolia,Turkey

Twenty-nine new records are reported from Turkey. The fungi species, including their macro-and microscopic features and distributions, are described. http://www.phytoparasitica.org posting July 14, 2004.     

玉米青贮与花生秧配比对奶牛瘤胃中花生秧降解特性的影响

本试验旨在研究玉米青贮与花生秧配比对奶牛瘤胃中花生秧降解特性的影响。选择4头体重、生理状态、生产性能相近,装有永久瘤胃瘘管的中国荷斯坦奶牛,分别饲喂含有玉米青贮与花生秧不同配比的全混合日粮(TMR),3种TMR中玉米青贮与花生秧的干物质(DM)配比分别为3.9∶1.0(A组)、1.2∶1.0(B组)、0.4∶1.0(C组)。试验分3期进行,依次进行A、B、C组试验。每期预试15 d,采样期4 d;共57 d。采用尼龙袋瘤胃降解技术测定花生秧在奶牛瘤胃中DM、粗蛋白质(CP)、中性洗涤纤维(NDF)和酸性洗涤纤维(ADF)的72 h瘤胃降解率,并求得目标养分的动态降解参数及有效降解率。结果表明:1)花生秧的DM在瘤胃中有效降解率为56.49%~59.62%,CP为40.45%~47.36%,NDF为33.26%~35.20%,ADF为36.31%~37.45%。2)B组DM的有效降解率显著高于C组(P0.05),极显著高于A组(P0.01);B、C组的CP有效降解率显著高于A组(P0.05)。3)B、C组的NDF快速降解部分含量显著高于A组(P0.05);3种TMR对花生秧粗NDF和ADF有效降解率无显著影响(P0.05)。由此可见,花生秧具有较高的饲用价值。本试验条件下,玉米青贮与花生秧DM配比为1.2∶1.0时,可有效提高花生秧DM和CP的瘤胃降解率。     

Short-term survival and mortality rates in a retrospective study of colic in 1588 Danish horses

Background

Outcomes of colic treatment are of great interest to clinicians, horse owners and insurers. One commonly used criterion of success is the overall short-term survival rate. This is used as to compare treatments and to measure quality of veterinary care, but may be biased by demographic or social factors such as attitudes towards animal suffering and euthanasia. The aims of this study were to 1) describe and analyse characteristics in horses with signs of colic referred to the University Hospital for Large Animals (UHLA), University of Copenhagen, Denmark over a 10-year period and 2) to compare these rates with those published in other comparable studies.

Results

The overall survival rate for colic horses over the 10-year study period was 68% (confidence intervals (CI): 66–71%; 1087/1588). In the medical group, 1093 horses, short-term survival was 87% (CI: 85–89%). Thirty one % of referred horses were given diagnoses requiring surgical intervention (CI: 29–33%). In this group 32% of the horses were euthanized before surgery (CI: 28–36%; 159/495). Of the surgical cases 27% (CI: 23-31%) were euthanized or died during surgery. Of the horses that recovered from surgery 25% died or were euthanized (CI: 19–32%; 48/189), while 75% survived to discharge (CI: 68–81%).

Conclusions

The short term survival rates of Danish horses with colic were similar or lower to those reported from other countries. Apart from variability of veterinary care, attitudes towards euthanasia vary among the countries, which may bias the outcomes. This study indicates that qualitative interview studies on owners’ attitudes towards animal suffering and euthanasia need to be conducted. Our opinion is that survival rates are not valid as sole indicators of quality of care in colic treatment due to selection bias. If the survival rates are to be compared between hospitals, techniques or surgeons, prospective studies including mutually agreed-on disease severity scores and a predefined set of reasons for euthanasia are needed.     

Stereochemistry of matairesinol formation by <Emphasis Type="Italic">Daphne</Emphasis> secoisolariciresinol dehydrogenase

Secoisolariciresinol dehydrogenase activity was detected for the first time from Daphne odora and Daphne genkwa (Thymelaeaceae), which are known to produce optically pure (+)-matairesinol. In sharp contrast, (–)-matairesinol was formed selectively over the (+)-antipode by the secoisolariciresinol dehydrogenase preparation from both D. odora callus and D. genkwa shoots.     

Annual net production of the five Sargassaceae species in Yoro,western Wakasa Bay,Sea of Japan

ABSTRACT:   Annual net production of the five Sargassaceae species was investigated in Yoro, western Wakasa Bay, Sea of Japan. The Sargassaceae species were collected at a depth of 2.0–2.5 m and subjected to stratified clipping for 13 months. Annual net production was estimated at 2407 g dry wt/m² for Sargassum patens , 2132 g dry wt/m² for Sargassum macrocarpum , 1458 g dry wt/m² for Sargassum siliquastrum , 1197 g dry wt/m² for Myagropsis myagroides , and 1471 g dry wt/m² for Sargassum piluliferum . The ratio of annual net production to maximum biomass (P/B_max) for these species ranged between 1.3 and 1.7, being higher than in previous studies which used the same method. Winter storms with strong wave exposure and relatively calm condition in Yoro were considered to augment P/B_max. The total losses estimated from the different units of stratified clipping were compared. If larger and less segregated units were applied, the total loss would decrease. It was suggested that a 50 cm stratum would be applicable to the larger species (3 m or longer) and a stratum of 20 cm or less would be applicable to mid-sized or smaller species (less than 3 m).     

Effect of taurine supplemented practical diet on growth performance and taurine contents in whole body and tissues of juvenile Japanese flounder <Emphasis Type="Italic">Paralichthys olivaceus</Emphasis>

ABSTRACT:   The effect of dietary taurine on juvenile Japanese flounder was determined by feeding three taurine-supplemented experimental diets (TAU) and a commercial diet (CD) to evaluate a practical diet for juvenile Japanese flounder. Juvenile Japanese flounder were reared on the three experimental diets supplemented with taurine at 0, 0.5, 1.0% and CD. These diets were fed to juvenile Japanese flounder of an initial mean body weight of 0.2 g for 6 weeks at 20°C and the taurine contents of the whole body and tissues were analyzed. The final average body weight of juvenile Japanese flounder fed the 1.0% TAU was significantly higher than that of the other groups. Taurine contents in the whole body and tissues increased with the increase in dietary taurine level. These results indicate that juvenile Japanese flounder require at least 15 mg/g taurine in the diet, even though a combined mix of fish, krill and squid meal was the main protein source in the experimental diets.