Mapping of QTLs controlling epicotyl length in adzuki bean (Vigna angularis)

Epicotyl length (ECL) of adzuki bean (Vigna angularis) affects the efficiency of mechanized weeding and harvest. The present study investigated the genetic factors controlling ECL. An F₂ population derived from a cross between the breeding line ‘Tokei1121’ (T1121, long epicotyls) and the cultivar ‘Erimo167’ (common epicotyls) was phenotyped for ECL and genotyped using simple sequence repeats (SSRs) and single-nucleotide polymorphism (SNP) markers. A molecular linkage map was generated and fifty-two segregating markers, including 27 SSRs and 25 SNPs, were located on seven linkage groups (LGs) at a LOD threshold value of 3.0. Four quantitative trait loci (QTLs) for ECL, with LOD scores of 4.0, 3.4, 4.8 and 6.4, were identified on LGs 2, 4, 7 and 10, respectively; together, these four QTLs accounted for 49.3% of the phenotypic variance. The segregation patterns observed in F₅ residual heterozygous lines at qECL10 revealed that a single recessive gene derived from T1121 contributed to the longer ECL phenotype. Using five insertion and deletion markers, this gene was fine mapped to a ~255 kb region near the end of LG10. These findings will facilitate marker-assisted selection for breeding in the adzuki bean and contribute to an understanding of the mechanisms associated with epicotyl elongation.     

The impact of climate change on maize yields in the United States and China

This study analyzes the impacts of climate change on maize yields using an econometric model that incorporates climate, economic, and technology variables. The major finding is climate change will not universally cause negative impacts of maize yields in the United States and China. The results of a simulation of climate change on maize yields over the period 2008-2030 show that a combination of changes in temperature and precipitation can either bring positive or negative effects on maize yields. Furthermore, variation in regional climatic and economic conditions makes the impacts of climatic change on maize yields substantially different in different regions. In this research, the impacts of climate change on maize yields are not simply examined by climate factors. Economic and technology adaptation effects on maize yields are also incorporated. Thus, even with significant changes in climate conditions that alter the maize crop’s growing environment and affect crop yields, a decrease in maize supply due to a decrease in maize yields would lead to an increase in the maize price, which in turn would induce farmers to add more investments in production inputs to raise yields. Thus, the decrease in actual yields may not be as dramatic as predicted in only climate factor considered cases. In this research, findings gained from the study can be used for early-staged policymaking decisions and advanced problem prevention programs. To ensure the continuous increase in maize yields in the future, further studies and research, as well as efficient environmental policies and actions are required.     

Co-situs application of controlled-release fertilizers to alleviate iron chlorosis of paddy rice grown in calcareous soil

Abstract

Co-situs is the placement with one application of a sufficient amount of controlled-release fertilizer for an entire growing season at any site, together with seeds or seedlings, without causing fertilizer salt injury. An experiment was conducted to find an efficient method for ameliorating Fe deficiency in two rice cultivars (cv. Tsukinohikari and cv. Sasanishiki) grown in a calcareous soil (pH 9.2, CaCO₃ 384 g kg^?1), which was poor in organic matter (0.1 g kg^?1) and available Fe (3.0 μg g^?1 soil). The field treatments consisted of co-situs application of the following fertilizers: 1) controlled-release NPK fertilizer (CRF-NPK) containing no micronutrients; 2) controlled-release NPK fertilizer containing micronutrients (CRF-M1); and 3) controlled-release NPK fertilizer containing micronutrients (CRF-M2). The main difference between CRF-M1 and CRF-M2 was that the former had larger granules than the latter. All the fertilizers were placed in contact with the roots of rice seedlings at transplanting time. Plants in the CRF-M1 and CRF-M2 treatments had similar lengths, number of stems, leaf age, and leaf color (SPAR value) during the cultivation period. By contrast, plants from the CRF-NPK treatments grew poorly, showed severe chlorosis symptoms of Fe deficiency, and all died on 30 DAT. Plants of both cultivars accumulated more macroand micronutrients with the CRF-M2 treatment than with the CRF-M1 treatment. The grain yield of cv. Tsukinohikari was 0.0, 1,910, and 2,160 kg ha^?1 for the CRF-NPK, CRF-M1, and CRF-M2 treatments, respectively, and 0.0, 2,490, and 2,860 kg ha^?1 for the same treatments for cv. Nihonbare. Chlorosis due to iron deficiency was successfully ameliorated and world-average grain yields were obtained with the co-sites application of both controlled-release fertilizers.     

RFLP/AFLP mapping of a brown planthopper (Nilaparvata lugens Stål) resistance gene Bph1 in rice

We have constructed a linkage map of the rice brown planthopper (BPH)resistance gene, Bph1. RFLP and AFLP markers were selected by thebulked segregant analysis and used in the mapping study of 262 F₂sthat were derived from a cross of `Tsukushibare', a susceptible japonica cultivar, and `Norin-PL3', an authentic japonicaBph1-introgression line. Twenty markers were mapped within a 28.9-cMregion containing the Bph1 locus on the long arm of rice chromosome12. Combining the result of segregation analysis of BPH resistance by themass seedling test and that of the markers, the Bph1 locus wasmapped within a 5.8-cM region between two flanking markers. The closestAFLP markers, em5814N and em2802N, was at 2.7 cM proximal to theBph1 locus. Together with the previously constructed high-resolutionmap of bph2 locating the locus at ca. 10 cM proximal to the Bph1 locus, this improved version of the linkage map would facilitatepyramiding these two important BPH resistance genes.     

Development of a multiplex PCR method for simultaneous detection of diagnostic DNA markers of five disease and pest resistance genes in potato

Multiplex PCR is practically a reasonable choice for molecular marker-assisted selection in potato breeding. We had developed and were using a multiplex PCR method for selection of resistance genes to cyst nematode (H1), Potato virus X (Rx1) and late blight (R1 and R2). Since then, more reliable and tightly linked markers for H1 and R2, and a new marker for resistance to Potato virus Y (Ry _chc ) were developed. In this article, all these superior markers, including a positive marker to eliminate PCR-failed samples, were incorporated into one multiplex PCR assay. Using the newly developed multiplex PCR technique, five plants potentially harboring all five resistance genes were selected from 96 hybrid plants approximately 5 h after DNA extraction, which is a third of the operation time compared with separate PCR reactions for each marker.     

Resettling,disconnecting or displacing? Attending to local sociality,culture and history in disaster settings

In many disaster settings, top‐down responses emphasise ‘expert‐led’ solutions that often involve relocating disaster‐affected communities. While the intention might be to move people from harm's way and facilitate recovery, failure to attend to local pre‐disaster circumstances as well as the interplay between power, resilience and vulnerability within and around affected communities often sees resettlement reconfigure as displacement or disconnection. This oversight may even usher in a new phase of dispossession and disadvantage for marginalised groups (particularly in colonial settings). This paper explores experiences in Australia, Japan and Taiwan to reflect on what issues of local sociality, local culture and local resilience need to be attended to in framing ‘better’ disaster responses.     

Mapping of quantitative trait loci controlling seedling vigor in rice (Oryza sativa L.) under submergence

Submergence-induced suppression of seedling vigor is a serious constraint particularly in the direct seeding rice cultivation system. To identify quantitative trait loci (QTLs) associated with seedling vigor in rice under submergence, a mapping population of 98 Backcross Inbred Lines derived from a cross of Nipponbare/Kasalath//Nipponbare was used. Phenotypic evaluation of seedling vigor under submergence was based on shoot length (SHL), root length (RTL) and shoot fresh weight (SFW) using a test tube bioassay method. Thirty-two putative QTLs were detected among which 7 were for SHL, 11 for RTL and 14 for SFW. Phenotypic evaluation was also made of the parental lines and a set of 54 chromosome segment substitution lines in which Nipponbare segments were substituted for by their homologous Kasalath segments covering the entire rice genome. Two QTLs with more than 10 % contribution to the total phenotypic variance were verified for SHL, and at least one for RTL and six for SFW on chromosomes 1, 3, 4, 6 and 7 at the 1 % significance level. Among these, all but two showed reductions in one, two or all three traits. Our present and previous results suggest that the Nipponbare genome has a potential to improve seedling vigor under submergence and that japonica germplasms can be used to breed for this important trait in indica rice.     

Measurement of Fertilizer Leaching from the Root Zone Using an Automated Infiltration Soil Water Sampler in an Unsaturated Sandy Field

In sandy fields with vegetable cultivation, fertilizer leaching may occur and it should be well-controlled. The development of a direct soil water sampler is necessary to examine solute transport and fertilizer leaching in the vadose zone, since soil water reflects timely monitoring of data more accurately than groundwater. We developed a Suction-Controlled Flux Sampler to collect infiltration soil water in a sandy soil. In the present study, we monitored fertilizer leaching in an unsaturated sandy field during the rainy season, while evaluating the sampling performance of SCFS for the sampling of infiltration water. SCFS directly collected the infiltration water effectively over a period of several months in the sandy field and recorded the Water-Collecting Efficiency from 92 to 115% under various infiltration conditions during a period of 50 d. WCE was affected by the rainfall intensity as well as by previous rainfall, which enhanced WCE. The results obtained from the use of SCFS and several sensors demonstrated that the amount of leached water remained low as long as irrigation was applied according to the cultivation manual. However, an unexpected heavy rainfall event led to fertilizer leaching. The fertilizer leaching trend was effectively monitored by several sensors inserted into the soils, while detailed analysis of the components was performed after collection by using SCFS. Direct access to infiltration water enabled to examine the infiltration process and detailed variations in the amounts of discharged anions. The sensor-equipped monitoring system together with SCFS is suitable for precise management of fertilizer and irrigation application.