Cost efficient potato (Solarium tuberosum L.) cultivar identification by microsatellite amplification

Potato cultivar identification is of great importance for seed production, germplasm management and breeders’ right protection. This study identified four SSRs necessary to discriminate between 37 commercially important potato (Solarium tuberosum L.) cultivars from INTA and other origins, frequently used in Argentina and neighbouring countries. Their PIC values ranged from 0.63 to 0.73 and separation was performed using high resolution agarose gel electrophoresis. The clear patterns obtained and the low cost and simplicity of the technique makes it an ideal tool for routine and effective potato cultivar identification.     

Capillary gas chromatography with atomic emission detection for pesticide analysis in soil samples

A method for the simultaneous determination of 10 pesticides (organochlorines, organophosphorus compounds, and pyrethrins) in soils using capillary gas chromatography with atomic emission detection (GC-AED) is reported. Soil samples are first "cleaned-up" with 25 mL of an ascorbic acid solution (pH 2.15). The aqueous phase is extracted with ethyl acetate, and the solid residue is then extracted twice with 10 mL of ethyl acetate. The three resultant organic extracts are combined, concentrated to dryness, and reconstituted in 1 mL of acetone. The pesticides are selectively detected by monitoring chlorine and bromine in the first run and sulfur emission line wavelength in the second run. Each chromatographic run takes 19 min. Detection limits are between 25 and 75 pg, depending on the compound, which corresponds to 1.7 and 5.0 ng/g in the soil samples, respectively. Recoveries of the pesticides from spiked preparations result in an overall mean recovery of 95.3% (n = 120) at fortification levels ranging from 10 to 60 ng/g, depending on the compound. The method is reliable and can be useful for routine monitoring in soils.     

Genetic diversity and origin of cultivated potatoes based on plastid microsatellite polymorphism

The origin of cultivated potatoes has remaining questions. In this study, 237 accessions of all cultivated species and 155 accessions of wild species closely related to cultivated potatoes, including their putative ancestors, were analyzed using 15 plastid microsatellites (SSRs) to investigate genetic diversity and their relationships with the wild species. We here used polymorphic plastid SSRs we developed from potato plastid genome sequences as well as already known plastid SSR markers. All 15 loci were polymorphic and identified a total of 127 haplotypes. Dramatic decreases in levels of genetic diversity were revealed in landraces in comparison with wild ancestor species. The plastid SSR results showed a decrease in haplotype number and diversity from Peru to both north and south. Phylogenetic analysis revealed two distinct groups. One of them, group A, contained the majority of accessions of cultivated species of the Solanum tuberosum Andigenum group including all accessions of cultivated diploid and triploid cytotypes of this group (S. chaucha, S. phureja, and S. stenotomum by a former taxonomic system) and most of tetraploid accessions of the S. tuberosum Andigenum group (S. tuberosum subsp. andigenum), and the majority of accessions of wild ancestors from the northern members of the S. brevicaule complex. Another group B comprised most of the wild species accessions and almost exclusively hybrid cultivated species which have introgressed plastid genomes from the other wild gene pools. Lack of clustering of traditional cultivated species (as used above) support a revised group classification of S. tuberosum.     

The responses of leaf litter invertebrates to environmental gradients along road edges in subtropical island forests

Knowledge of how roads affect forest biodiversity can be improved by measuring the responses of indicator species to complex environmental gradients caused by these infrastructures. We studied litter invertebrate species responses to road edges in laurel and pine forests in Tenerife, Canary Islands. We sampled invertebrates from litter and assessed the environmental variation related to road proximity. We also assessed the effect of relevant environmental predictors on a diverse array of potential indicator species. We applied canonical ordination and non-parametric regression (Lowess) to classify invertebrate species responses to roads and their associated gradients. Three types of responses to road edge proximity were defined for the most common invertebrate taxa: edge-preferring or edge specialists, interior-preferring or edge-avoiders, and edge-indifferent or neutral species. Those species appearing most frequently and with higher population density between 1 and 20 m from the edge (commonly peaking at 10 m from the road) were categorized as edge-preferring. We classified taxa attaining peak population densities at or beyond 60 m from the edge (and most commonly 100 m) as interior species. Edge-neutral species were those without an evident pattern of stabilization in abundance along the gradient and with peaks in abundance at varying distance intervals. These edge litter communities contain a high native and endemic diversity but also a significant density of alien fauna. The specific patterns of penetration of road edge effects on invertebrate species should be seen as having a pervasive and cumulative impact considering the exceptionally large number of roads in these forests and the high population densities of alien invertebrates. Future management plans for forest conservation on the Canary Islands should include the highly altered but valuable litter communities along road edges.     

Detection of Gibellina cerealis infection on winter common wheat in Ukraine

Journal of Plant Diseases and Protection - False eyespot disease caused by Gibellina cerealis (Pass.) Pass. was first detected in Ukraine during field inspections of wheat canopies in...     

Effect of annealing from traditional nixtamalisation process on the microstructural,thermal, and rheological properties of starch and quality of pozole

Eleven maize landraces were evaluated for pozole quality. The microstructural, thermal and rheological properties of annealed starch granules determine most of the quality of pozole. Annealed starch in traditional nixtamalisation has an important role in increasing gelatinisation onset (To), peak (Tp) and final (Tf) temperatures; peak, setback and final viscosity as well as the stability of the starch granule, all of which significantly affect pozole quality. Annealed starch in Cacahuacintle nixtamal (pozole end-use) increased temperatures To, Tp and Tf by >5.2, >3.8 and >4.1 °C respectively, and narrowed the range Tf − To from 13.78 to 12.62 °C. The enthalpy was reduced from 6.76 to 5.85 J/g, while the nixtamal starch in tortilla maize landraces presented fewer annealing effects. The annealing effect in nixtamal starch seems to stabilize the starch granules and avoid their collapse, compared to native starch, as shown by the X-ray diffraction peak intensity and pattern that is similar to unprocessed maize. Starch in nixtamal changes from Type A to Type V pattern in pozole. Kernel physical parameters, although important, affected the quality to a lesser extent, with the exception of the flotation index. Cacahuacintle maize landrace showed the best quality and yield as well as a short pozole cooking time.     

Interplay between heritability,genetic correlation and economic weighting in a selection index with and without genomic information

The availability of genomic information demands proper evaluation on how the kind (phenotypic versus genomic) and the amount of information influences the interplay of heritability (h²), genetic correlation () and economic weighting of traits with regard to the standard deviation of the index (σ_I). As σ_I is directly proportional to response to selection, it was the chosen parameter for comparing the indices. Three selection indices incorporating conventional and genomic information for a two trait (i and j) breeding goal were compared. Information sources were chosen corresponding to pig breeding applications. Index I incorporating an own performance in trait j served as reference scenario. In index II, additional information in both traits was contributed by a varying number of full‐sibs (2, 7, 50). In index III, the conventional own performance in trait j was combined with genomic information for both traits. The number of animals in the reference population (N_P = 1000, 5000, 10 000) and thus the accuracy of GBVs were varied. With more information included in the index, σ_I became more independent of , and relative economic weighting. This applied for index II (more full‐sibs) and for index III (more accurate GBVs). Standard deviations of index II with seven full‐sibs and index III with N_P = 1000 were similar when both traits had the same heritability. If the heritability of trait j was reduced ( = 0.1), σ_I of index III with N_P = 1000 was clearly higher than for index II with seven full‐sibs. When enhancing the relative economic weight of trait j, the decrease in σ_I of the conventional full‐sib index was much stronger than for index III. Our results imply that N_P = 1000 can be considered a minimum size for a reference population in pig breeding. These conclusions also hold for comparing the accuracies of the indices.     

Influence of Fucoidans on Hemostatic System

Three structurally different fucoidans from the brown seaweeds Saccharina latissima (SL), Fucus vesiculosus (FV), and Cladosiphon okamuranus (CO), two chemically modified fucoidans with a higher degree of sulfation (SL-S, CO-S), and a synthetic totally sulfated octasaccharide (OS), related to fucoidans, were assessed on anticoagulant and antithrombotic activities in different in vitro experiments. The effects were shown to depend on the structural features of the compounds tested. Native fucoidan SL with a degree of sulfation (DS) of 1.3 was found to be the most active sample, fucoidan FV (DS 0.9) demonstrated moderate activity, while the polysaccharide CO (DS 0.4) was inactive in all performed experiments, even at high concentrations. Additional introduction of sulfate groups into fucoidan SL slightly decreased the anticoagulant effect of SL-S, while sulfation of CO, giving rise to the preparation CO-S, increased the activity dramatically. The high level of anticoagulant activity of polysaccharides SL, SL-S, and CO-S was explained by their ability to form ternary complexes with ATIII-Xa and ATIII-IIa, as well as to bind directly to thrombin. Synthetic per-O-sulfated octasaccharide OS showed moderate anticoagulant effect, determined mainly by the interaction of OS with the factor Xa in the presence of ATIII. Comparable tendencies were observed in the antithrombotic properties of the compounds tested.     

Occurrence and distribution study of residues from pesticides applied under controlled conditions in the field during rice processing

The results of an experiment to study the occurrence and distribution of pesticide residues during rice cropping and processing are reported. Four herbicides, nine fungicides, and two insecticides (azoxystrobin, byspiribac-sodium, carbendazim, clomazone, difenoconazole, epoxiconazole, isoprothiolane, kresoxim-methyl, propanil, quinclorac, tebuconazole, thiamethoxam, tricyclazole, trifloxystrobin, λ-cyhalotrin) were applied to an isolated rice-crop plot under controlled conditions, during the 2009-2010 cropping season in Uruguay. Paddy rice was harvested and industrially processed to brown rice, white rice, and rice bran, which were analyzed for pesticide residues using the original QuEChERS methodology and its citrate variation by LC-MS/MS and GC-MS. The distribution of pesticide residues was uneven among the different matrices. Ten different pesticide residues were found in paddy rice, seven in brown rice, and eight in rice bran. The highest concentrations were detected in paddy rice. These results provide information regarding the fate of pesticides in the rice food chain and its safety for consumers.