Starved bacteria retain their size but lose culturability - Lessons from a 5000 years old undisturbed A-horizon

The vast majority of soil bacteria are unable to form visible colonies on agar media. One hypothesis is that unculturable soil bacteria are dwarf cells that may either be small starved forms derived from larger species or represent inherently small species. We test the hypotheses that cells of extremely starved soil bacterial communities are smaller and less culturable than cells of bacterial communities from a richer soil, and that culturability is related to cell size by comparing an extremely starved community from a 5200-year-old A-horizon buried under a burial mound with a community from a modern agricultural A-horizon.We serially filtered cell suspensions through filters with successively smaller pore sizes (0.8 μm, 0.6 μm and 0.4 μm) and assessed total cell number and culturability, i.e. the ability to form colonies on two types of agar media, in each size fraction. Cell size distributions were assessed in unfiltered suspensions. Average cell size was only moderately reduced in the starved community, where culturability was low for all size classes. In contrast, culturability was much higher in the modern community, where culturability decreased dramatically with decreasing cell sizes.     

Definitive‐intent intensity‐modulated radiation therapy provides similar outcomes to those previously published for definitive‐intent three‐dimensional conformal radiation therapy in dogs with primary brain tumors: A multi‐institutional retrospective study

Radiotherapy with or without surgery is a common choice for brain tumors in dogs. Although numerous studies have evaluated use of three‐dimensional conformal radiotherapy, reports of definitive‐intent, IMRT for canine intracranial tumors are lacking. Intensity‐modulated radiation therapy has the benefit of decreasing dose to nearby organs at risk and may aid in reducing toxicity. However, increasing dose conformity with IMRT calls for accurate target delineation and daily patient positioning, in order to decrease the risk of a geographic miss. To determine survival outcome and toxicity, we performed a multi‐institutional retrospective observational study evaluating dogs with brain tumors treated with IMRT. Fifty‐two dogs treated with fractionated, definitive‐intent IMRT at four academic radiotherapy facilities were included. All dogs presented with neurologic signs and were diagnosed via MRI. Presumed radiological diagnoses included 37 meningiomas, 12 gliomas, and one peripheral nerve sheath tumor. One dog had two presumed meningiomas and one dog had either a glioma or meningioma. All dogs were treated in the macroscopic disease setting and were prescribed a total dose of 45‐50 Gy (2.25‐2.5 Gy per fraction in 18‐20 daily fractions). Median survival time for all patients, including seven cases treated with a second course of therapy was 18.1 months (95% confidence of interval 12.3‐26.6 months). As previously described for brain tumors, increasing severity of neurologic signs at diagnosis was associated with a worse outcome. Intensity‐modulated radiation therapy was well tolerated with few reported acute, acute delayed, or late side effects.     

A comparison of methods for estimating phosphorus uptake kinetics under steady‐state conditions 1

Michaelis‐Menten kinetic parameters (I_max and K_M) are useful for describing nutrient uptake by plants. This paper compares two methods for estimating the kinetics of P uptake. Both methods employed a steady‐state hydroponic system to measure P uptake by wheat (Triticum aestivum L.) seedlings. In one method, uptake was measured from two P concentrations in nutrient solution, with I_max and K_M estimated by direct linear plot (DLP). In an alternate, multiple concentration (MC) method, uptake was measured from five P concentrations, and kinetic parameters were estimated by either nonlinear regression or the Hanes plot. The I_max and K_M, estimates obtained by the DLP method were compared to those obtained by the MC method. The MC method offered practical advantages. Unlike the DLP, it allowed estimation of the external P concentration at which net influx = 0 (C_min), and did not require a priori estimates of K_M and C_min. The MC method provided more precise median parameter estimates as indicated by smaller nonparametric confidence intervals. Using the median C_min value of 1.9 μM, the best estimates of I_max and K_M (and 96% confidence intervals) derived by nonlinear regression were 2.2 (1.6 to 2.8) nmol P g^‐1s^‐1, and 11 (10.6 to 12.9) μM, respectively.     

鲁麦21慢白粉病抗性基因数目和遗传力分析

以多年鉴定具有慢白粉抗性的小麦品种鲁麦21和感白粉病品种京双16及其杂交组合F_2:3和F_2:4代株系200个为材料, 于2005—2007年连续2个生长季, 在北京和安阳两地分别进行田间病害鉴定, 并采用质量性状和数量性状2种分析方法估算鲁麦21的慢病基因数目和遗传力。结果表明, 在这2个群体中至少存在4对抗性基因, 其广义遗传力为0.53~0.78。由于出现超亲分离, 因此推测京双16可能贡献1对微效抗病基因, 而鲁麦21至少含有3对慢白粉病抗性基因。     

CIMMYT普通小麦籽粒硬度等位变异的检测

籽粒硬度主要由5D染色体短臂的一对主效基因Ha控制,研究籽粒硬度等位变异有助于提高小麦的磨粉和食品加工品质。本试验对国际玉米小麦改良中心（CIMMYT）的138份历史品种和代表性高代品系的硬度基因型进行了研究。在用SDS-PAGE鉴定Pina-D1b/Pinb-D1a时,用10%甘油代替水配制分离胶,用PDA代替甲叉配制分离胶和浓缩胶,增强了PINA和PINB两种蛋白带型的分辨率。结果表明,与其他国家硬质麦中Pina-D1a/Pinb-D1b类型偏多的特点明显不同,CIMMYT硬质小麦中puroindoline a（PINA）蛋白缺失类型（或称Pina-D1b/Pinb-D1a）较多,为118个,占85.5%;Pina-D1a/Pinb-D1a（野生型）为11个,占8.0%;Pina-D1a/Pinb-D1b类型有9个,占6.5%。其中,PINA缺失对小麦籽粒硬度的影响最大,与其他2种基因型硬度值之间差异达5%显著水平。先前研究结果表明,PINA蛋白缺失类型的磨粉品质和面包烘烤品质均劣于Pina-D1a/Pinb-D1b类型,因此,建议CIMMYT多引进一些其他硬度变异类型的小麦种质,如Pina-D1a/Pinb-D1b类型等,以改善其硬度基因型过度单一的局面,从而减少PINA蛋白缺失带来的不利影响。同时,也提醒我国以其他用途如抗病、抗旱等为目的,引种CIMMYT小麦时,还应充分考虑PINA蛋白缺失对磨粉和加工品质的不利影响,以更合理引进和有效利用CIMMYT种质资源。     

Organic Halogens in Landfill Leachates

Using a group parameter, totalorganic halogens (TOX), high TOX concentrationswere found in leachates and leachate contaminatedgroundwaters at two Danish mixed sanitary andhazardous waste sites. With commonly used screeningprocedures for organic contaminants, the individualhalogenated organic compounds behind the high TOXcould not be found. Conversely, part of the TOX couldbe attributed to halogenated humic substances that cannot be analysed with conventional organic contaminantanalyses. Even though TOX can still be considered anindicator of leachate contamination in the aquifers,attempts to identify the halogenated contaminantsbehind the TOX using screening methods such as GC-MSwill be unsuccessful in most cases.     

The effects of creep feed composition and form and nursery diet complexity on small intestinal morphology and jejunal mucosa-specific enzyme activities after weaning in pigs

Fifty-six litters from first-parity sows standardized to 12 piglets were used to determine the effects of creep feed composition and form and the provision of low- or high-complexity nursery diets on the evolution of small intestinal histomorphology and jejunal mucosa-specific enzyme activities postweaning. At 5 d of age, litters (initial bodyweight [BW] 2.31 ± 0.61 kg) were assigned to one of four creep feeding regimens (n = 14): 1) commercial creep feed (COM), 2) liquid milk replacer (LMR), 3) pelleted milk replacer (PMR), or 4) no creep feed (NO). At weaning (21 d of age), six pigs per litter were provided a HIGH- (contained highly digestible animal proteins) or LOW- (contained corn and soybean meal as main protein sources) complexity nursery diet (n = 7). At 21, 28, and 59 d of age, two pigs per pen (one castrated male and one female) were euthanized, and ileal and jejunal segments for histomorphological measurements and jejunal mucosal scrapings were collected to determine specific mucosa enzyme activities. At weaning, pigs provided COM had a greater ileal absorptive capacity (M) than LMR or NO, which were not different (14.1 vs. 10.4 and 10.5 ± 0.9 μm²; P < 0.05); PMR was intermediate. On days 28 and 59, M was not different among pigs regardless of creep feed treatments. Pigs fed LOW had reduced jejunal villus height (VH; P < 0.001) and M (P < 0.001) on day 28 vs. day 21. The VH and M were not different for pigs fed HIGH or LOW by the end of the nursery period. For all dietary treatments except COM-HIGH and COM-LOW, jejunal mucosal maltase-specific activity was not different between days 21 and 28 of age but greater on day 59 (P < 0.05). For pigs that received COM-HIGH, maltase-specific activity was not different between days 21 and 28 but greater on day 59 than day 28 (P < 0.05). For pigs that received COM-LOW, maltase-specific activity was not different between days 21, 28, and 59. Regardless of creep or nursery treatment, sucrase-specific activity was the greatest on day 59, followed by days 21 and 28 (P < 0.001), and lactase-specific activity was greater on day 21 than on days 28 and 59 (P < 0.001), which were not different. Therefore, pigs that provided LOW diet had greater villus atrophy and reduced M during the first week after weaning vs. pigs that provided HIGH, regardless of creep feeding regimen, but were able to recover by the end of the nursery period.     

A correction factor for,and its application to,visual censuses of littoral fish

Visual estimation techniques were used between October 1976 and May 1977 on the fish fauna of an enclosed mid-intertidal pool in the eastern Cape, South Africa, to test the usefulness and accuracy of this non-consumptive census method. In January, 1977, two pools were censused for fish, then poisoned using the ichthyocide ‘pronoxfish’ and all fish collected. Forty species in 21 families were obtained from the two stations. The accuracy of visual estimates varied with the species of fish. Secretive and cryptically coloured types, as well as species which Inhabit crevices, were underestimated, between 0 and 86% being counted. Other fish with protective colours but that occur more openly and do not react adversely to divers, as well as schooling species, were also underestimated, but up to 100% of the total were observed. Those which occur singly or in small groups in the water column were counted more accurately, with 57 to 100% of the actual number being seen. Correction factors were calculated from these data and applied to a census taken of one pool in May. Comparisons of corrected and actual numbers Indicate that these factors were relatively accurate for non-secretive species. The factors will, however, vary for each species, from observer to observer, depending on their personal experience, and from area to area.     

Salmonella in pork cuttings in supermarkets and butchers' shops in Denmark in 2002 and 2006

The prevalence of Salmonella in fresh pork cuttings in Denmark in the years 2002 and 2006 was investigated at retail and compared with the retail supply pattern. A total of 1025 and 3473 samples were taken in 2002 from butcher's shops and supermarkets, respectively. The corresponding numbers in 2006 were 259 from butchers' shops and 628 from supermarkets. In 2002, 1.2% of all samples were positive for Salmonella; butchers' shops and supermarkets had 1.8% and 1.0% positive samples, respectively. The overall prevalence in 2006 was 4.2%, with prevalence of 8.1% and 2.6% for butchers' shops and supermarkets, respectively. Hence, increases around 3- to 5-fold were found. There was neither observed any parallel increase in Salmonella positive carcasses in Danish slaughterhouses during the study period, nor were any changes in supply routes towards slaughterhouses with higher prevalence observed, which could explain the apparent increase. We hypothesize that hygiene levels and ability to avoid cross-contamination and prevent growth of the organism, in the meat processing chain after slaughter were the most likely responsible factors. Results from this study indicate that the hygiene performance, particularly at retail, has a significant impact on the occurrence of Salmonella. This implies that there is no direct link between slaughterhouse Salmonella surveillance data and the level of Salmonella contamination at retail. To improve risk assessment of Salmonella in fresh pork meat, this study underlines the need for comprehensive retail data.     

Long‐term effects of animal manure and mineral fertilizers on phosphorus availability and silage maize growth

A better appraisal of the plant availability of soil phosphorus (P) added with animal manure is crucial to alleviate environmental impacts from over‐application of P. This study compares the availability of P to maize in the Askov long‐term experiments using unmanured plots and plots receiving corresponding rates of nitrogen (N), P and potassium (K) in mineral fertilizers or manure. Total‐P and water extractable P (Pw) in soil, and plant height, dry weight, P concentration and P uptake were determined in early August. Final yields were determined in late October. Soil Pw was similar for plots receiving corresponding rates of P in mineral fertilizer or manure form. With a strong relationship between Pw, and maize growth and final yields, Pw was a reliable indicator of P availability to maize. Plant dry weight, P concentration and P uptake in early August were 23%, 8% and 31% higher, respectively, for maize grown on soil receiving manure compared with mineral fertilizer, while final maize yield in late October was 13% higher. Plant height and dry weight determined in early August suggested that maize development at this growth stage defined final maize yield. We conclude that the availability of P was similar after long‐term application of corresponding rates of P in animal manure and mineral fertilizers, and that animal manure improves the growth of maize compared to mineral fertilizers. This is ascribed to micronutrients and residual N effects from previous additions of manure.