Sequence finishing and mapping of Drosophila melanogaster heterochromatin

Genome sequences for most metazoans and plants are incomplete because of the presence of repeated DNA in the heterochromatin. The heterochromatic regions of Drosophila melanogaster contain 20 million bases (Mb) of sequence amenable to mapping, sequence assembly, and finishing. We describe the generation of 15 Mb of finished or improved heterochromatic sequence with the use of available clone resources and assembly methods. We also constructed a bacterial artificial chromosome-based physical map that spans 13 Mb of the pericentromeric heterochromatin and a cytogenetic map that positions 11 Mb in specific chromosomal locations. We have approached a complete assembly and mapping of the nonsatellite component of Drosophila heterochromatin. The strategy we describe is also applicable to generating substantially more information about heterochromatin in other species, including humans.     

Characterization of a noncytopathic HIV-2 strain with unusual effects on CD4 expression

A new isolate of the human immunodeficiency virus type 2, designated HIV-2UC1, was recovered from an Ivory Coast patient with normal lymphocyte numbers who died with neurologic symptoms. Like some HIV-1 isolates, HIV-2UC1 grows rapidly to high titers in human peripheral blood lymphocytes and macrophages and has a differential ability to productively infect established human cell lines of lymphocytic and monocytic origin. Moreover, infection with this isolate also appears to involve the CD4 antigen. However, unlike other HIV isolates, HIV-2UC1 does not cause cytopathic effects in susceptible T cells nor does it lead to loss of CD4 antigen expression on the cell surface. These results indicate that HIV-2 may be found in individuals with neurologic symptoms and that the biological characteristics of this heterogeneous subgroup can differ from those typical of HIV-1.     

Comparison of dietary protein and energy utilization in three Asian catfishes (Pangasius bocourti, P. hypophthalmus and P. djambal)

Dietary protein and energy utilization were compared in three Pangasiid species of high economical interest for fish farming in South‐East Asia. Feeding experiments were performed during 4 weeks on Pangasius bocourti, P. djambal and P. hypophthalmus fingerlings, 6.68, 7.69 and 6.41 g mean mass, respectively. A high‐protein diet containing mostly fishmeal was designed to provide proteins without energy limitation. Growth response, variation in body composition and nutrient utilization were compared for fish receiving variable amounts of diet corresponding to increasing protein supply, 0, 5, 15, 25, 35 and 45 g kg^?1 day^?1. The highest specific growth rate was observed for P. bocourti (6.0% day^?1), followed by P. djambal (5.6) and P. hypothalamus (4.1). Pangasius djambal exhibited the highest protein deposition rate, whereas P. bocourti was characterized by a high fat deposition rate even with a low feeding rate. Lower performance was obtained with P. hypophthalmus.     

Removal of surface lipids improves the functionality of commercial zein in viscoelastic zein-starch dough for gluten-free breadmaking

Maize prolamin (zein), together with starch, hydroxypropyl methylcellulose, sugar, salt, yeast and water can form wheat-like cohesive, extensible, viscoelastic dough when mixed above room temperature (e.g. 40 °C). This dough is capable of holding gas. However, it is excessively extensible, and when used for hearth-type rolls, it tends to become flat. Bench-scale defatting of zein with chloroform at room temperature significantly (P < 0.05) improved specific volume (4.5 ml/g vs. 3.3 ml/g) and shape of the rolls (width-to-height 2.0 vs. 3.9). The total lipid content determined by accelerated solvent extraction (100 °C, 69 bar, chloroform), however, only decreased from 8.0 to 6.6% due to this bench-scale defatting. Staining experiments with Naphthol Blue Black suggested that bench-scale defatting removed surface lipids from the zein particles, and thus facilitated their aggregation. Aggregation experiments with zein and water at 40 °C, and laser scanning confocal microscopy with zein-starch dough confirmed that zein particles aggregated more easily when surface-defatted. Dynamic oscillatory temperature sweeps demonstrated that surface-defatting lowered the temperature at which protein cross-linking occurred by 2 °C. This research can help to produce superior gluten-free bread and could also possibly contribute to the better understanding of wheat dough.     

Fish responses to acidity in Québec lakes: A review

To establish the impact of acidity on fish populations,studies were conducted in 37 Québec lakes located in four regions; the réserve des Laurentides and Portneuf and the Charlevoix and Témiscamingue regions. Density (catch per unit effort) of brook chary (Salvelinus fontinalis) decreases with increasing acidity. Moreover, in the Charlevoix region, this species has disappeared from three acid lakes (4.6 ?pH?5.l) with low Ca levels. Unlike growth, condition demonstrates a close relationship to acidity in brook charr populations. The total Al concentration in gills decreases with increasing size and pH. Lake acidity and sensitivity to acidification introduces problems in gamefish management. A survey of 17 lakes of the Témiscamingue region reveals that species diversity and total fish biomass are much lower in acid lakes than non acid lakes. In addition, two acid lakes are devoid of fish. Cyprinidae and Johnny darters (Etheostoma nigrum) are abundant in lakes with a pH level of 5.9 to 7.0 but are absent in lakes with a pH lower than 5.2. The yellow perch (Perca flavescens) is the only fish that appears to be tolerant to a wide pH range. This species, however, is in poor condition in acid lakes as compared with non acid lakes.     

Influence of ingredients on the self-diffusion of aroma compounds in a model fruit preparation: an nuclear magnetic resonance-diffusion-ordered spectroscopy investigation

Diffusion-ordered spectroscopy (DOSY)-pulsed field gradient (PGF) nuclear magnetic resonance (NMR) spectroscopy was used to measure self-diffusion coefficients of aroma molecules in model fruit preparations. The impact of the sucrose content on aroma diffusion was specifically investigated, and the relationship with viscosity, water activity, and dry matter parameters was evidenced. DOSY-PGF NMR spectroscopy was found to be a relevant and accurate technique to follow self-diffusion of aroma compounds at low concentrations in a complex food matrix and to obtain information on diffusion of the sucrose and of the water molecules. We showed that aroma self-diffusion was strongly decreased in fruit preparation because of the high sucrose content, which induces the formation of a network through hydrogen bonds with water. Self-diffusion coefficients were determined for aroma molecules of different natures, and values are related to the physicochemical properties of the molecule.     

Accelerated solvent extraction of alkylresorcinols in food products containing uncooked and cooked wheat

This research focuses on the overall extraction process of alkylresorcinols (ARs) from uncooked grains and baked products that have been processed with wheat, corn, rice, and white flour. Previously established extraction methods developed by Ross and colleagues, as well as a semiautomated method involving accelerated solvent extraction (ASE), were applied to extract ARs within freshly ground samples. For extraction of alkylresorcinols, nonpolar solvents such as ethyl acetate have been recommended for the extraction of uncooked foods, and polar solvents such as 1-propanol:water (3:1 v/v) have been recommended for the extraction of baked foods that contain rye, wheat, or other starch-rich grains. A comparison of AR extraction methods has been investigated with the application of gas chromatography and a flame ionization detector (GC-FID) to quantify the AR content. The goal of this research was to compare the rapid accelerated solvent extraction of the alkylresorcinols (ASE-AR) method to the previous manual AR extraction methods. Results for this study as well as the investigation of the overall efficiency of ASE-AR extraction with the use of a spiking study indicated that it can be comparable to current extraction methods but with less time required. Furthermore, the extraction time for ASE (approximately 40 min) is much more convenient and less tedious and time-consuming than previously established methods, which range from 5 h for processed foods to 24 h for raw grains.     

Warming increases tolerance of an insect pest to fungicide exposure through temperature-mediated hormesis

Pest management strategies relying on agrochemicals could be altered by climate change, because of the temperature-dependent toxicity of the compound involved. Many studies have explored the response of targeted pests to pesticide and temperature. Pesticides are seldom strictly selective and also affect nontarget pests. Surprisingly, the way temperature may shape these side effects of pesticides remains overlooked, limiting our understanding of the net impacts of future chemical treatments on the overall damage induced by different pests. We investigated how temperature modulates the response of a major grape insect pest (the tortricid moth Lobesia botrana) to a copper-based fungicide. We examined the lethal (larval survival) and sublethal (larval development, pupal mass, immune parameters) effects of exposure to different concentrations of copper in larval food. We found that copper concentration had negative linear effects on larval development and pupal mass. In addition, copper concentration had biphasic curvilinear effects on total phenoloxidase activity, which is indicative of hormesis (stimulation and inhibition of insect performance at low and high copper concentrations, respectively). Temperature stimulated development, while compromising immunity (total phenoloxidase activity). Significant interaction between copper concentration and temperature was detected for larval survival and phenoloxidase activity: warmer conditions improved pest tolerance to copper through temperature-driven hormesis (larval survival) or by shifting the hormesis-related peak of performance toward higher copper concentrations (phenoloxidase activity). This combination of simple and interactive effects could propagate to populations, communities and agroecosystem, with implications for future management of viticultural pests.

     

Evaluation of Strawberry Genotypes for Chaetosiphon fragaefolii (Strawberry Aphid) Preference

ABSTRACT

Thirty-one strawberry genotypes were evaluated for supporting the reproductive success of the strawberry aphid (Chaetosiphon fragaefolii), a vector of several strawberry viruses. A pure colony of C. fragaefolii was initiated from eggs collected from field strawberry leaves in Fall 2013. In Spring 2014 greenhouse-grown strawberry plants with four to five leaves were placed in screened cages (16 genotypes/cage) and five aphids were placed on each plant. After 30–32 days, the number of aphids in each of four developmental stages was counted on each plant. Total aphid numbers/plant ranged from a mean of 33 on Fragaria chiloensis CFRA 48 (PI 551459) to 279 on F. × ananassa ‘AAC Lila’. Cultivars with relatively low numbers of aphids included ‘Bounty’ (106 aphids), ‘Mira’ (114 aphids), and ‘Annapolis’ (115 aphids). This experiment, part of a larger project on aphids and virus diseases associated with the cultivated strawberry, will inform decisions in the strawberry breeding program.     

Untersuchungen iiber die Resistenzeigenschaften einiger Weißpappelklone gegenüber der Triebspitzenkrankheit

The resistance of several white poplar-clones against Pollaccia radiosa. Continuing the work of Weisgerber (1967,1968 and 1969) clone-typical forms of resistance against spring defoliation (shoot-dieback), caused by Pollaccia radiosa were investigated in several Leuce-poplarclones. The most obvious differences in attack occur under natural conditions. The observed differences concerning the type of resistance (infection versus spreading in the host) seem to depend on the anatomical structure of the host.