Genetic diversity and structure of Ethiopian,Yemen and Brazilian C<Emphasis Type="Italic">offea arabica</Emphasis> L. accessions using microsatellites markers

Genetic diversity among 115 coffee accessions from the Coffea Germplasm Collection of IAC was assessed using SSR markers. The germplasm represents 73 accessions of Coffea arabica derived from spontaneous and subspontaneous plants in Ethiopia and Eritrea, species center of origin and diversity, 13 commercial cultivars of C. arabica developed by the Breeding Program of IAC, 1 accession of C. arabica cv. ‘Geisha’, 13 accessions of C. arabica from Yemen, 5 accessions of C. eugenioides, 4 accessions of C. racemosa and 6 accessions of C. canephora. Genetic analysis was performed using average number of alleles per locus (A), proportion of polymorphic loci (P), Shannon’s genetic index (H′ and G′_ST) and clustering analysis. All evaluated species were distinguished by a cluster analysis based on Jaccard’s coefficient. Differentiation between the cultivated plants of C. arabica and accessions derived from spontaneous and subspontaneous plants was observed. Spontaneous and subspontaneous accessions from Ethiopia were separated according to the geographical origin: east and west of the Great Rift Valley. Cultivated plants showed a low genetic diversity with a division in two groups: accessions from Yemen (H′=0,028) and Brazilian commercial cultivars (H′=0,030). The results agreed with previously reported narrow genetic basis of cultivated plants of C. arabica and supported the hypotheses about domestication of the species. This study also showed a significant genetic diversity among accessions from Ethiopia and Eritrea present in the Germplasm Collection of IAC. This diversity is specially observed in accessions from Sidamo (H′=0,143), Kaffa (H′=0,142) and Illubabor (H′=0,147) indicating their importance as source of genetic variability for coffee breeding programs.     

Relationship between inbreeding and milk production traits in two Italian dairy sheep breeds

The effects of inbreeding in livestock species breeds have been well documented and they have a negative impact on profitability. The objective of this study was to evaluate the levels of inbreeding in Sarda (SAR, n = 785) and Valle del Belice (VdB, n = 473) dairy sheep breeds and their impact on milk production traits. Two inbreeding coefficients (F) were estimated: using pedigree (F_PED), or runs of homozygosity (ROH; F_ROH) at different minimum ROH lengths and different ROH classes. After the quality control, 38,779 single nucleotide polymorphisms remained for further analyses. A mixed-linear model was used to evaluate the impact of inbreeding coefficients on production traits within each breed. VdB showed higher inbreeding coefficients compared to SAR, with both breeds showing lower estimates as the minimum ROH length increased. Significant inbreeding depression was found only for milk yield, with a loss of around 7 g/day (for SAR) and 9 g/day (VdB) for a 1% increase of F_ROH. The present study confirms how the use of genomic information can be used to manage intra-breed diversity and to calculate the effects of inbreeding on phenotypic traits.     

Soil function assessment in high-mountain environments: Testing the SEPP tool in a ski resort in the Italian Alps

Soil function assessment (SFA) plays an important role in evaluating the impact of management practices, land-use changes and construction work. The Soil Evaluation for Planning Procedures (SEPP) tool is one of the few existing SFA tools that allow automated SFA. It was originally developed to address land-use planning issues, which traditionally play a minor role in high-mountain areas. Hence, the SEPP tool has not yet been applied to such environments. In this study, we tested the SEPP performance on high-mountain soils previously altered by construction work and land-use changes. Specifically, we evaluated soil data from 16 ski runs and 16 paired control sites in the Italian Alps, aiming to reflect land-use-driven differences in soil properties in the SFA results. The study revealed options to adapt SEPP assessment methods if high-mountain soils with special characteristics (e.g. shallowness or high coarse fragment content) are investigated. The main adaptation options are the consideration of further soil parameters and the adjustment of thresholds of function fulfilment levels. However, the assessment results of the current SEPP version already reflect the most relevant impacts of ski run construction on the soils in the study area: fulfilment of some of the soil functions was impaired and that of others improved, while most remained at a comparable level. We conclude that SFA with the SEPP tool provides valuable support for the evaluation of construction projects and land-use change in high-mountain environments. However, the significance of SFA can be improved by considering the intrinsic properties of high-mountain soils.     

Snow removal and its influence on temperature and N dynamics in alpine soils (Vallée d'Aoste,northwest Italy)

The effect of a lack of snow cover in winter was investigated in two soils, beneath larch and meadow, in NW Italy (Vallée d'Aoste Region). During the late 1980s and early 1990s and 2000s, this region experienced extreme climatic conditions including a low snow pack and lack of snow cover for extended periods with important effects on soil temperature and nutrient dynamics. In particular, the mountain belt in the Alps may be extremely sensitive to these phenomena, in relation to the rise in average snowline projected under a warmer global climate. The study area is located at an elevation of 1450 m asl in the Italian Alps (Mont Mars Natural Reserve). During the winter 2003/04, snow was continuously removed in a treatment plot while a reference plot was maintained undisturbed. Soil temperature was measured at 10 cm depth by data loggers (UTL‐1). Soil N transformations in the topsoil (10 cm depth) were determined by the buried‐bag technique. The removal of the snow cover caused a significant decrease in soil temperature, related to concurrent decreases in air temperature. The lowest soil temperatures recorded were –4.3°C and –4.5°C beneath larch and meadow, respectively, on January 31, 2004. Soil temperature in the undisturbed plots was maintained above the freezing point when the snow cover was present. The snow removal caused significant increases in net ammonification in both soils and net nitrification only under meadow, but did not affect microbial biomass N which decreased in both plots. Our results suggest that the lower temperature reached in the plot without snow favored the production of inorganic N by physical rather than microbial degradation of soil organic matter (SOM). Soil freezing could enhance soil‐aggregate disruption releasing physically protected SOM and fragmentation of OM itself.     

From field to health: a simple way to increase the nutraceutical content of grape as shown by NO-dependent vascular relaxation

Polyphenolic grapevine components involved in plant resistance against pathogens possess various pharmacological properties that include nitric oxide (NO)-dependent vasodilation and anti-inflammatory and free radical scavenging activities, which may explain the protective effect of moderate red wine consumption against cardiovascular disease. The aim of this work was (a) to verify the possibility that preharvest treatments of grapevine with a plant activator, benzo-(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester (BTH), could lead to an enriched nutraceutical potential of wine and (b) to characterize the profile of metabolites responsible for pharmacological activity. Plant spraying at the end of veraison, with a water suspension of BTH (0.3 mM), led to increased whole anthocyanin content as confirmed by HPLC comparative analysis. Extracts from berry skins of BTH-treated grapevines caused NO-dependent vasorelaxation, with a concentration-response curve that was significantly shifted to the left of the control non-BTH-treated curve. Moreover, 1:1000 dilutions of berry extracts from BTH-treated plants significantly increased basal production of guanosine 3',5'-cyclic monophosphate (cGMP) in human vascular endothelial cells when compared to the corresponding extracts of untreated plants. These results show that BTH treatment increases anthocyanin content of grape extracts, as well as their ability to induce NO-mediated vasoprotection. No increase of anthocyanin content was observed in the wine extracts from BTH-treated vines. It is concluded that BTH treatment could be exploited to increase the nutraceutical potential of grapes.     

Symbiotic efficiency and identification of rhizobia that nodulate cowpea in a Rhodic Eutrudox

Cowpea (Vigna unguiculata (L.) Walp.) is one of the most important crops in the north and northeast regions of Brazil, where it is grown under the subsistence regime, mainly because of its adaptation to the local edaphoclimatic conditions. This species is an important legume in Brazil because of its significant nutritional value in the diet of low-income populations. Moreover, it is able to benefit from the process of biological nitrogen fixation, which leads to a significant reduction in production costs. The objective of this research was to evaluate the agronomic efficiency of bacterial strains approved by the Ministry of Agriculture, Livestock and Supply for commercial inoculant production when in symbiosis with cowpea in a Rhodic Eutrudox in Lavras, MG, as well as to identify and verify the efficiency of the native populations that nodulate cowpea. Agronomic efficiency of nitrogen-fixing nodulating bacterial strains (UFLA 03-84, INPA 03-11B, and BR 3267) in symbiosis with cowpea was evaluated in the field. Subsequently, the efficiency and diversity of isolates from the nodules obtained in the field were evaluated under greenhouse conditions. The genetic diversity of the efficient isolates was determined by partial sequencing of the 16S rRNA gene. Grain yields obtained by the inoculation of seeds in the field with the strains were similar to those of the controls without inoculation with and without mineral N addition indicating the existence of efficient native populations. In the native community, we identified isolates with similar or higher efficiency than the strains approved for cowpea inoculation and the control that received mineral N. The isolates subjected to partial sequencing of the 16S rRNA gene were phylogenetically related to the Bradyrhizobium genus.     

Occurrence, isolation and biological activity of phytotoxic metabolites produced in vitro by Sphaeropsis sapinea, pathogenic fungus of Pinus radiata

Sphaeropsis sapinea was repeatedly isolated in Sardinia from symptomatic samples of the upper part of declining pine (Pinus radiata) plants. Observed symptoms mainly consisted of foliage chlorosis, drying of needles and cankers on branches. The S. sapinea strains were shown to produce phytotoxic metabolites in culture filtrates. Three metabolites were isolated for the first time from this fungus and identified by their spectroscopic and optical properties as R-(−)-mellein, (3R,4R)-4-hydroxymellein and (3R,4S)-4-hydroxymellein. When assayed for phytotoxic and antifungal activities on host and non-host plants and on some phytopathogenic fungi, the R-(−)-mellein showed significant activity, while the other two 3,4-dihydroisocoumarins showed only a synergic activity in both tests.     

Ecologically Sustainable Exploitation Rates—A multispecies approach for fisheries management

Fisheries management is slowly evolving from its traditional single‐species focus to a more holistic ecosystem‐based approach. Yet, limits for exploitation are almost always set based on single‐species models, treating species as isolated entities. This is problematic since the sustainability of a fishery hinges on its effects on the exploited community as a whole. Here, we develop a novel analytical approach of estimating exploitation rates that are sustainable with respect to the state of whole fish communities. Our approach simultaneously addresses species interactions, environmental covariates and natural variability of population sizes, yet it is framed around a simple and accessible objective. We derive Ecologically Sustainable Exploitation Rates, that is exploitation rates associated with a maximum acceptable probability (determined by management) that any interacting species decreases to an unacceptably low population size. Using models fitted to an exploited fish community, we show how accounting for species interactions constrains the possibilities for ecologically sustainable exploitation. The conventional omission of species interactions may thus result in overestimated exploitation limits. Moreover, our application rendered a counterintuitive result: it suggests that the exploitation of one species should increase, as compared to mean historical levels, for the purpose of conservation of the community as a whole. Such insights could impossibly be gained using single‐species approaches, illustrating the need to adopt multispecies models in fisheries management. Analytical derivation of Ecologically Sustainable Exploitation Rates offers a mean to do so.