Report from the conference, ‘identifying obstacles to applying big data in agriculture’

Precision Agriculture - Data-centric technology has not undergone widespread adoption in production agriculture but could address global needs for food security and farm profitability. Participants...     

Exploitation shifted trophic ecology and habitat preferences of Mediterranean and Black Sea bluefin tuna over centuries

During recent decades, the health of ocean ecosystems and fish populations has been threatened by overexploitation, pollution and anthropogenic-driven climate change. Due to a lack of long-term ecological data, we have a poor grasp of the true impact on the diet and habitat use of fishes. This information is vital if we are to recover depleted fish populations and predict their future dynamics. Here, we trace the long-term diet and habitat use of Atlantic bluefin tuna (BFT), Thunnus thynnus, a species that has had one of the longest and most intense exploitation histories, owing to its tremendous cultural and economic importance. Using carbon, nitrogen and sulphur stable isotope analyses of modern and ancient BFT including 98 archaeological and archival bones from 11 Mediterranean locations ca. 1st century to 1941 CE, we infer a shift to increased pelagic foraging around the 16th century in Mediterranean BFT. This likely reflects the early anthropogenic exploitation of inshore coastal ecosystems, as attested by historical literature sources. Further, we reveal that BFT which migrated to the Black Sea–and that disappeared during a period of intense exploitation and ecosystem changes in the 1980s–represented a unique component, isotopically distinct from BFT of NE Atlantic and Mediterranean locations. These data suggest that anthropogenic activities had the ability to alter the diet and habitat use of fishes in conditions prior to those of recent decades. Consequently, long-term data provide novel perspectives on when marine ecosystem modification began and the responses of marine populations, with which to guide conservation policy.     

Standardized catch and survival rates,and effect of a ban on shark retention,Palau pelagic longline fishery

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Application of multiplex quantitative polymerase chain reaction methods to detect common bacterial fish pathogens in Nile tilapia,Oreochromis niloticus,hatcheries in Costa Rica

Edwardsiella spp., Streptococcus spp., and Francisella noatunensis subsp. orientalis are some of the most important fish pathogens affecting global tilapia, Oreochromis spp., aquaculture. In Costa Rica, the aquaculture industry is dominated by freshwater‐cultured Nile tilapia, Oreochromis niloticus, which are raised in all seven national provinces. At present, little is known regarding the diversity of pathogens present in these facilities, and definitive identification of agents associated with disease outbreaks are rare. To evaluate the prevalence of common bacterial pathogens in these systems, this study used multiplex quantitative polymerase chain reaction (qPCR) assays targeting Edwardsiella, Streptococcus, and Francisella species as a diagnostic and surveillance tool. In 2017, seven different tilapia hatcheries were visited, and 350 fingerlings were subjected to necropsy and molecular diagnostic evaluation. Fish exhibiting gross signs of disease were subjected to histological and microbiological analysis. For the first time, Edwardsiella anguillarum was recovered and molecularly confirmed from diseased tilapia in Costa Rica. In addition, F. noatunensis subsp. orientalis was identified in a region of Costa Rica where it had not been previously reported.     

Three‐dimensional movements of harbour seals in a tidally energetic channel: Application of a novel sonar tracking system

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Opportunities to improve fisheries management through innovative technology and advanced data systems

Fishery‐dependent data are integral to sustainable fisheries management. A paucity of fishery data leads to uncertainty about stock status, which may compromise and threaten the economic and food security of the users dependent upon that stock and increase the chances of overfishing. Recent developments in the technology available to collect, manage and analyse fishery‐relevant data provide a suite of possible solutions to update and modernize fisheries data systems and greatly expand data collection and analysis. Yet, despite the proliferation of relevant consumer technology, integration of technologically advanced data systems into fisheries management remains the exception rather than the rule. In this study, we describe the current status, challenges and future directions of high‐tech data systems in fisheries management in order to understand what has limited their adoption. By reviewing the application of fishery‐dependent data technology in multiple fisheries sectors globally, we show that innovation is stagnating as a result of lack of trust and cooperation between fishers and managers. We propose a solution based on a transdisciplinary approach to fishery management that emphasizes the need for collaborative problem‐solving among stakeholders. In our proposed system, data feedbacks are a key component to effective fishery data systems, ensuring that fishers and managers collect, have access to and benefit from fisheries data as they work towards a mutually agreed‐upon goal. A new approach to fisheries data systems will promote innovation to increase data coverage, accuracy and resolution, while reducing costs and allowing adaptive, responsive, near real‐time management decision‐making to improve fisheries outcomes.     

Cumulative selectivity benefits of increasing mesh size and using escape gaps in Australian Portunus armatus traps

The individual and cumulative effects of increasing mesh size (from 56‐ to 75‐mm stretched mesh opening) and installing three escape gaps (36 × 120 mm) in collapsible‐netted round traps were assessed to address concerns associated with excessive discarding in an Australian portunid fishery. Compared to conventional traps comprising 56‐mm mesh throughout, those with the same mesh size and escape gaps caught significantly fewer (by 54%) undersized blue swimmer crabs, Portunus armatus Milne‐Edwards and yellowfin bream, Acanthopagrus australis Günther (by 64%). Irrespective of escape gaps, simply increasing the mesh size to 75 mm did not significantly affect catches of undersized P. armatus, although 87% fewer A. australis were retained. Traps with both 75‐mm mesh and escape gaps maintained reductions of A. australis, but had a clear cumulative effect on P. armatus selection, retaining 84% fewer undersized individuals across a larger size at retention. The results support using escape gaps in existing conventional traps, but illustrate the need to configure the minimum legal mesh size to approach the desired target size of P. armatus as a precursor to maximising trap selectivity. Larger‐meshed traps also require less material (i.e. plastic), which benefits their manufacture and, equally importantly, reduces environmental costs when lost.     

Effects of Mosquitofish,Gambusia affinis,on Channel Catfish,Ictalurus puncatatus,Production Ponds

Mosquitofish, Gambusia sp., have been spread throughout the world to biologically control mosquitoes. However, the fish has gained a reputation as an invasive species and has been implicated in displacing native aquatic species. Gambusia affinis are native to the southeastern United States and commonly occur in commercial channel catfish, Ictalurus punctatus, production ponds. We investigated effects of mosquitofish presence on zooplankton populations, water quality, disease occurrence, and fish production in experimental ponds. There were no differences between ponds with or without mosquitofish in numbers of calanoid copepods, cyclopoid copepods, total copepods, Bosmina sp., Ceriodaphnia sp., Moina sp., Daphnia sp., or total cladocerans. There were also no differences in copepod and cladoceran sizes. Copepod nauplii were more numerous during the summer months in ponds with mosquitofish. There were no differences in water quality variables (soluble reactive phosphorus, nitrate, nitrite, ammonia, total nitrogen, total phosphorus, pH) or phytoplankton density between ponds stocked with and without mosquitofish. Catfish production and disease occurrence were also similar between ponds with and without mosquitofish. Although mosquitofish may cause problems when stocked outside their native range, there does not appear to be any adverse effects of mosquitofish presence in catfish production ponds.