Whole genome sequence analysis to detect signatures of positive selection for high fecundity in sheep

Ovulation rate and prolificacy are the most important reproductive traits that have major impact on the efficiency of lamb meat production. Here, we compared the whole genomes of the Romanov sheep, known as one of the high prolific breeds, and four other sheep breeds namely Assaf, Awassi, Cambridge and British du cher, to identify genetic mechanisms underlying prolificacy in sheep. Selection signature analysis revealed 637 and 477 protein‐coding genes under positive selection from F_ST and nucleotide diversity (Pi) statistics, respectively. Further analysis showed that several candidate genes including LEPR, PDGFRL and KLF5 genes are involved in sheep prolificacy. The identified candidate genes in the selected regions are novel and provide new insights into the genetic mechanisms underlying prolificacy in sheep and can be useful in sheep breeding programmes to develop improved breeds for high reproductive efficiency.     

Effect of age,sex, and season on the prevalence of Linguatula serrata infestation in mesenteric lymph nodes of goats slaughtered in Tabriz,Iran

Tropical Animal Health and Production - This research was conducted to determine the prevalence and intensity of infection with nymphs of Linguatula serrata in mesenteric lymph nodes of the goats...     

Utilization of Site-Specific Recombination in Biopharmaceutical Production

Mammalian expression systems, due to their capacity in post-translational modification, are preferred systems for biopharmaceutical protein production. Several recombinant protein systems have been introduced to the market, most of which are under clinical development. In spite of significant improvements such as cell line engineering, introducing novel expression methods, gene silencing and process development, expression level is unpredictable and unstable because of the random location of integration in the genome. Site-specific recombination techniques are capable of producing stable and high producer clonal cells; therefore, they are gaining more importance in the biopharmaceutical production. Site-specific recombination methods increase the recombinant protein production by specifically inserting a vector at a locus with specific expression trait. The present review focused on the latest developments in site-specific recombination techniques, their specific features and comparisons.     

Optimal Design of Dilution Experiments Under Volume Constraints

The paper develops methods to construct a one-stage optimal design of dilution experiments under the total available volume constraint typical for biomedical applications. We consider various design criteria based on the Fisher information both in Bayesian and non-Bayesian settings and show that the optimal design is typically one-atomic meaning that all the dilutions should be of the same size. The main tool is variational analysis of functions of a measure and the corresponding steepest descent-type numerical methods. Our approach is generic in the sense that it allows for inclusion of additional constraints and cost components, like the cost of materials and of the experiment itself.     

Monitoring the photosystem II behavior of wild and cultivated barley in response to progressive water stress and rehydration using OJIP chlorophyll a fluorescence transient

To study the effects of progressive drought stress on photosystem II behavior of wild type (Spantaneum) and cultivated barley (Morocco), different levels of soil water availability, including control, moderate, mild, and severe water stress (70%, 50%, 30%, and 10% water holding capacity of soil, respectively) and rehydration were used. Polyphasic OJIP fluorescence transient of Morocco plants exhibited a considerable increase in fluorescence intensity at O, J, and I steps under mild and severe stress relative to slight increase in wild barley. Values of fluorescence parameters and quantum efficiencies, including minimal fluorescence, relative variable fluorescence at phase J and I, maximal quantum yield of photosystem II (PSII), performance index, electron transport yield, and excitation transfer efficiency were influenced by water stress in both genotypes. These parameters were significantly less affected in wild type barley by progressive drought stress compared to Morocco. After re-watering, both genotypes were able to restore from severe drought in most of the traits. Based on our findings, highly correlated values of relative water content (RWC) and independent JIP-test parameters (P < 0.01) indicate that the chlorophyll a fluorescence induction technique is sensitive to plant water status and performance index represent an accurate and reliable indicator for early stress detection and also explore plant vitality under water stress.     

Using kale (Brassica oleracea var. acephala) as a phytoremediation plant species for lead (Pb) and cadmium (Cd) removal in saline soils

Ornamental kale (Brassica oleracea var. Acephala) is usually planted from early autumn until late winter. Since most of the plants used for phytoremediation cannot be grown during this time, kale can be a suitable option for phytoremediation and utilized during autumn and winter in urban landscape, especially in metropolitan areas where high levels of cadmium (Cd) and lead (Pb) pollutions exist. Kale growth in saline soil at different growth stages (germination and vegetative growth stages) was studied in this investigation. A factorial experiment based on completely randomized design (CRD) with four replications was used in this study. Treatments included three levels of sodium chloride (NaCl) (0, 30, and 60 mg/kg), four levels of Cd (0, 4, 8, and 16 mg/kg), and four levels of Pb (0, 1, 5, and 10 mg/kg). Results indicated that increase in Cd and Pb concentrations in the soil decreased fresh and dry weights of the plants. The results of the various growth stages revealed that under salinity stress, kale plants were able to absorb more Pb than Cd and effectively remediate Pb in polluted and saline lands. Cd accumulation in control treatment was 6.2% more than that in the saline treatments, whereas, Pb accumulation in the highest NaCl level, 60 mg/kg salinity treatment was 7.64% more than that of the control condition. Also, proline content of the plants was significantly increased under Cd and Pb stress. From the results of this study, it was concluded that using kale plant is recommended for phytoremediation of saline soils with 10 and 16 mg/kg Pb and Cd contents, respectively.     

Copper and zinc uptake by celery plants grown on acidic soil amended with biosolids

For trace elements, such as copper (Cu) and zinc (Zn), the bioavailability of these elements, Cu and Zn, in biosolids is important because both are essential elements and both are potential contaminants when biosolids are land applied. A greenhouse study was conducted in factorial experiment based on a completely randomized design (CRD) with four replications on a soil treated with four rates of Cu (0, 50, 100, and 150 mg/kg) and four rates of Zn (0, 150, 300, and 450 mg/kg) on celery plants to investigate the distribution and mobility of these elements as well as growth and antioxidant changes of celery. The results of antioxidant changes were inconclusive due to irregular changes with Zn and Cu applications. However, generally the results show that Cu did not affect superoxide dismutase (SOD) or peroxidase (POD) activities in most of the treatments. On the other hand, Zn stimulated SOD and POD activities in most of the treatments. The photosynthesis rate decreased with the applications of Cu and Zn at the rates above 100 and 300 mg/kg and increased in low Cu concentration (50 mg/kg) compared to S (soil without biosolid).     

Sex steroids in the seminal fluid and milt quality indices in the endangered Caspian brown trout,Salmo trutta caspius

In this study, the relationships between the seminal fluid sex steroids sperm quality parameters (i.e. sperm motility and sperm production were investigated in the endangered Caspian brown trout. According to results, the variation of sex steroid concentrations was comparatively high. The seminal fluid levels of 17α‐Hydroxyprogesterone (OHP) had positive correlation with percentage and duration of sperm motility. Similar correlation was found between the seminal fluid concentration of testosterone (T) and estradiol‐17β (E2) with sperm concentration. As well as, there was no significant correlation between progesterone (P) with sperm quality indices. The significant correlation of some steroids i.e. OHP, T and E2 and sperm quality parameters of Caspian brown trout confirms the key role of these steroids in acquisition of the potential of motility during final stage of the maturation.     

Sero-prevalence and identification of <Emphasis Type="Italic">Ornithobacterium rhinotracheale</Emphasis> in broiler flocks in south-eastern Iran

Ornithobacterium rhinotracheale is a gram negative bacterial pathogen causing respiratory tract infections in poultry. Tracheal, lung and serum samples were obtained from 21 broiler flocks of 8 farms from a slaughterhouse located in south-eastern of Iran. Among 630 tracheal and lung samples from samples resulting from 315 chickens, 11 (3.5%) ORT isolates were identified using biochemical tests. The isolates originated from 9 (42.9%) flocks out of 4 farms. All of the isolates were recovered from tracheal swabs and showed an API 20NE identification biocode 0-2-2-0-0-0-4. Of the 420 serum samples examined by ELISA, 134 (31.9%) sera from 17 (81.0%) flocks were positive for ORT antibodies. These results indicate that ORT is present in most broiler flocks with respiratory disorders in southeast Iran.     

Trends in calving ages and calving intervals for Iranian Holsteins in Fars province,southern Iran

Purpose  

To determine trends in calving ages and calving interval as measures of reproductive performance in Iranian Holsteins in Fars province, southern Iran during 2000–2005.