T lymphocyte responses during early enteric Mycobacterium avium subspecies paratuberculosis infection in cattle

Johne's disease (JD) is a costly intestinal disease of ruminants caused by Mycobacterium avium subspecies paratuberculosis (Map), which is transmitted to perinatal calves by the fecal-oral route. Disease control efforts focus on identification and culling of infected cattle from herds; therefore failure to identify animals early is a major obstacle to reducing transmission. Development of host immunity during early JD remain incompletely characterized so detecting subclinical JD using immunologic techniques is a substantial challenge in the field. Development of a test with high sensitivity and specificity is a major research goal with significant implications for the cattle industry. The objectives of this study were to compare early Map-specific T lymphocyte responses in naive, experimentally Map infected and Map vaccinated calves using a subcutaneous matrigel biopolymer-based assay. We examined the phenotype of recruited lymphocytes and local interferon gamma (IFNγ) production within subcutaneously placed matrigel containing Map antigen 30 days after experimentally induced intestinal Map infection or Map vaccination. We show that IFNγ-secreting CD4+ T cells are recruited to matrigel sites in vaccinated but not infected or naïve calves. γδ T cells recruited to matrigel sites of Map-infected calves were mostly WC1-, while γδ T cells recruited to matrigel sites of Map-vaccinated calves were predominantly WC1+. IFNγ at matrigel sites was a discriminating factor between infected calves, naïve calves and vaccinated calves. These data contribute to our understanding of early anti-Map immunity, and may be useful for detecting early intestinal Map infections in calves or for enhancing our ability to discriminate between Map-infected and Map-vaccinated calves.     

Contrasting the ability of data to make inferences regarding dispersal: case study of the Red-cockaded woodpecker (Picoides borealis)

Dispersal is a critical biological process that contributes to the persistence of species in complex and dynamic landscapes. However, little is known about the ability of different types of data to reveal how species interact with landscape patterns during dispersal. Further, application of process-based, landscape-scale models able to capture the influence of land use and climate change are limited by this lack of dispersal knowledge. Here we highlight a method for building such models when dispersal parameters are unknown, but information on the mating system and survival are available. We applied a common statistical framework, rooted in information theory, to contrast the ability of abundance, movement, and genetic data to estimate dispersal parameters for endangered Red-cockaded woodpecker (RCW), using an individual-based, spatially-explicit population model. Dispersal was modeled as a multifaceted process in which foray distance, long-distance dispersal, competition for mates, and landscape permeability were treated as uncertain. We found that movement data are three-times more powerful than abundance data collected at the same spatial and temporal scales. However, habitat occupancy data collected over much a shorter time scale but at regional spatial scales were very effective for estimating dispersal. We also found that one-year of abundance data provided a similar reduction in uncertainty as genetic differences among breeding groups estimated using a 24-year pedigree. Substituting population genetic data for movement and abundance data often led to the same parameter values, but not always. Our study highlights important differences in the information content of data commonly collected in the field.     

大豆粕在海水虾类饲料上的应用(续)

~~大豆粕在海水虾类饲料上的应用(续)@Douglas E.Conklin     

Population consequences of behaviour in the European bitterling (Rhodeus sericeus Cyprinidae)

Abstract –  The European bitterling is a freshwater fish with an unusual spawning symbiosis with freshwater mussels. Female bitterling possess long ovipositors that they use to place their eggs onto the gills of a mussel. Males fertilise the eggs by releasing sperm into the inhalant siphon of the mussel. The embryos develop inside the mussel for approximately a month, eventually leaving the mussel as actively swimming larvae. Because they use a discrete spawning site that can be readily manipulated they represent an ideal model for linking reproductive decisions with population dynamics. Bitterling have been used in field and large-scale pool experiments, in combination with modelling and population and genetic studies to investigate the population consequences of behaviour. Here we show how male mating tactics, female mate and oviposition decisions, and aggressive interference competition among juveniles, may have significant impacts on bitterling population size and population genetics.     

Effects of large woody debris removal on physical characteristics of a sand-bed river

1. Removal of large woody debris (LWD) is one of the most widely practised stream alterations, particularly in sand-bed rivers of the south-eastern USA. Selective removal of LWD has been proposed as an alternative to orthodox non-selective clearing in order to conserve ecological resources, but methods for comparing hydraulic and environmental effects of selective and non-selective removal have not been developed. Conservation of stream habitats requires quantification of LWD removal impacts on physical habitat. 2. Physical characteristics of straightened, sand-bed reaches of the South Fork Obion River in western Tennessee, USA that were rich in LWD were compared with those in similar reaches where debris had recently been removed using selective removal guidelines. 3. The mean volume of LWD per unit water volume was 0.0545 in the uncleared reaches, but nearly 60% lower (0.0225) in the cleared reach. 4. A simple technique for predicting hydraulic roughness in channels with varying amounts of LWD was developed. Hydraulic roughness, as measured by the Darcy-Weisbach friction factor, was about 400% greater in uncleared reaches at base flow but declined to a level about 35% greater than for the cleared reaches at higher flows. Predicted friction factors were within 35% of measured friction factors at higher flows. 5. Physical habitat diversity in this channelized sand-bed stream was strongly related to the density of LWD. Flow conditions in the uncleared reaches were more heterogeneous than in the cleared reach, especially at low flow. At low flow, uncleared reaches tended to be shallower, have lower velocities, slightly finer bed material, and more heterogeneous conditions overall. Shannon indices based on depth and velocity were an average of 48% higher in uncleared reaches. 6. Bed sediments underneath and immediately adjacent to LWD formations were finer and contained more organic matter than sediments distant from LWD. However, when all bed samples were considered, organic content was positively correlated with median grain size.     

Genetic divergence of kingfish from Japan, Australia and New Zealand inferred by microsatellite DNA and mitochondrial DNA control region markers

ABSTRACT: Genetic polymorphism in kingfish, collected from coastal waters of Japan, Australia and New Zealand, were examined using microsatellite (MS) DNA and mitochondrial DNA (mtDNA) control region markers. Sixteen to 25.7 alleles per locus were observed in three MS markers, while the average observed (and expected) heterozygosities were 0.782 (0.918), 0.750 (0.809) and 0.650 (0.888) for Australian, Japanese and New Zealand kingfish, respectively. Twelve mtDNA haplotypes were detected by the digestion of control region sequences with five endonucleases: Hae III, Hinf I Mbo I, Rsa I and Taq I. Significant genetic divergence was observed between the kingfish population from Japan and those from Australia–New Zealand. There was no significant differentiation among the Australian and New Zealand population samples.     

Effect of dietary echium oil on growth, fatty acid composition and metabolism, gill prostaglandin production and macrophage activity in Atlantic cod (Gadus morhua L.)

Echium oil (EO) is a vegetable oil in which percentages of stearidonic acid (STA, 18:4n‐3) often exceed those of its n‐6 series equivalent γ‐linolenic acid (GLA, 18:3n‐6). Stearidonic acid is elongated to 20:4n‐3 in fish cell cultures, suggesting that EO could be included in diets for marine fish to increase tissue 20:4n‐3 and 20:3n‐6 and, thereby, modulate eicosanoid metabolism. Thus, the present study aimed to test the hypotheses that dietary EO would increase tissue 20:4n‐3 and 20:3n‐6 and modulate immune function and eicosanoid production in juvenile Atlantic cod (Gadus morhua L.) fed a diet where fish oil (FO) was replaced by EO. Duplicate groups of juvenile cod (initial weight ca. 4 g) were fed for 18 weeks on fish meal‐based diets (55% protein and 16% lipid) that differed in oil source (FO or EO). There were no significant differences in growth and feed efficiency, hepato‐somatic index, percentages of liver and flesh lipids and lipid class compositions for cod fed FO and EO. Percentages of 18:4n‐3, 18:3n‐6 and 20:3n‐6 in the total lipids of flesh and liver were higher, and percentages of 20:5n‐3 and 20:4n‐6 were both lower in fish fed EO than in those given FO. In flesh, the increased 18:3n‐6 and 18:4n‐3 were primarily located in phosphatidylcholine and, to a lesser extent, phosphatidylethanolamine, whereas 20:3n‐6 concentration was highest in phosphatidylinositol. Desaturation of 18:3n‐3 (to tetraene products) and 20:5n‐3 to 22:6n‐3 in hepatocytes was very low but was increased by dietary EO. Echium oil significantly decreased the production of prostaglandin F from gill cells stimulated with calcium ionophore A23187, and reduced head kidney macrophage activity, but had no effect on serum lysozyme activity or basic haematology. In conclusion, dietary EO may have beneficial effects on some immune parameters including eicosanoid metabolism in marine fish although this may be primarily because of decreased 20:4n‐6 rather than increasing tissue levels of 20:3n‐6 or 20:4n‐3.     

An investigation of avoidance by Antarctic krill of RRS James Clark Ross using the Autosub-2 autonomous underwater vehicle

The autonomous underwater vehicle (AUV) Autosub-2 was deployed on eight missions ahead of RRS James Clark Ross in the northern Weddell Sea and in the Bransfield Strait, Southern Ocean, to assess avoidance of the research vessel by Antarctic krill Euphausia superba. The AUV was equipped with the same type of scientific echosounder as the research vessel (Simrad EK500 operating at 38 and 120 kHz) and measured the density of krill along transect acoustically (g m⁻² wet mass) prior to the ship’s arrival. We hypothesised that if krill avoided the ship, perhaps in response to radiated noise, then the ship should detect less krill than the AUV which is known to have much lower noise levels than the ship. We were unable to detect any significant difference between the density of krill detected by the ship or the AUV, either at the transect level or at finer scales within transects. We conclude, therefore, that avoidance by krill of RRS James Clark Ross will not significantly bias acoustic estimates of krill abundance by this vessel.     

Fate of lower Mississippi river habitats associated with river training dikes

• 1 Regions of reduced velocity adjacent to spur dikes along the Lower Mississippi River are valuable aquatic habitats. Similar zones along other large rivers have been converted to terrestrial habitats by sediment deposition.
• 2 Repetitive hydrographic surveys of 26 representative groups of dikes are examined to determine the direction and rates of change.
• 3 Since the dikes were constructed, the aquatic volume and area of associated low-velocity habitats have been reduced by 38% and 17%, respectively. Examination of time series shows that most changes occur shortly after construction, and after initial adjustment, habitat area and volume fluctuate about a condition of dynamic equilibrium.
• 4 Sedimentation rates were most rapid for dike fields constructed on the inside of bends to prevent chute development. Dike fields built to force or maintain thalweg crossings exhibited erosion rather than deposition.