Irrigation practices may affect denitrification more than nitrogen mineralization in warm climatic conditions

Predicting the impact of irrigation practices on soil N mineralization and N balance is an important issue to optimize N fertilization and reduce the N losses towards the environment. The effect of summer irrigation on N dynamics was investigated in two arable fields in Southern France. Net N mineralization was assessed by combining frequent measurements of water and mineral N contents in soil and the use of a calculation model (LIXIM). It was first calculated assuming that denitrification was negligible. This hypothesis led to inconsistent results, apparent net N mineralized being smaller under irrigated than non-irrigated conditions and net mineralization kinetics being erratic. The occurrence of denitrification was confirmed by the use of ¹⁵NO₃ tracing in an experiment carried out in summer, including three irrigated treatments. The average ¹⁵N recovery varied from 45% to 85% and was smallest in the most frequently irrigated treatment. Over the 8-week experiment, the N losses varied from 30 to 38 kg ha⁻¹ in the irrigated treatments. They were satisfactorily simulated by a simple denitrification model (NEMIS). Combining the LIXIM model and the simulated or calculated denitrification allowed to predict satisfactorily the evolution of soil mineral N accounting for the effects of temperature and moisture. The net N mineralized for 8 weeks varied from 34 kg N ha⁻¹ in the un-irrigated to 46 kg N ha⁻¹ in the irrigated treatments. The drying–rewetting cycles did not induce a flush of N mineralization. Our results suggest that denitrification has to be accounted for in irrigated systems, particularly in warm conditions and when the topsoil contains high nitrate contents.     

Ectomycorrhizal fungi identification in single and pooled root samples: terminal restriction fragment length polymorphism (TRFLP) and morphotyping compared

We describe here the results of a study conducted to evaluate a terminal restriction fragment length polymorphism (TRFLP) approach targeting rRNA genes for determination of ectomycorrhizal (ECM) communities colonizing the roots of loblolly pine (Pinus taeda L.). Root tips separated from soil cores were classified according to morphological characteristics and DNA was then extracted from each group of morphotyped tips. Labeled primers were used to generate terminal restriction fragments (TRF) for molecular fingerprinting of root colonizing fungi and to determine how well TRFLP could be used to discriminate between ectomycorrhizal types. Morphotypes generally correlated well with specific TRFs and sequence analysis confirmed that TRFs could be used to discriminate among fungal types. Sequence analysis indicated that important ECM fungi including Russulaceae, Thelephorales, and Tricholomataceae could be fingerprinted with TRFLP. In addition, a fixed proportion of the DNA extracted from each morphotype from the same core was used in a pooling experiment used to assess whether previously identified fungal species types could be distinguished from one another within reconstructed communities. Since some morphotypes share TRFs, dual analysis of ITS1 and ITS2 was necessary for accurate fingerprinting of fungal types. Approximately, 5.0±0.3 phylotypes were detected per core with TRFLP-corrected morphotyping as compared to 4.0±0.4 phylotypes using TRFLP on pooled community samples. TRFLP made on experimental sporocarp communities suggested that reduced ECM richness with TRFLP may be partly caused by differences in the amount of DNA available for PCR and primer bias. Nonetheless, TRFLP on pooled morphotypes accounted for more than 93% of colonized root tips. The method can be used to facilitate analysis of mycorrhizal communities using root tips collected from soil cores.     

Quantifying and simulating carbon and nitrogen mineralization from diverse exogenous organic matters

The potential contributions of exogenous organic matters (EOMs) to soil organic C and mineral N supply depend on their C and N mineralization, which can be assessed in laboratory incubations. Such incubations are essential to calibrate decomposition models, because not all EOMs can be tested in the field. However, EOM incubations are resource-intensive. Therefore, easily measurable EOM characteristics that can be useful to predict EOM behaviour are needed. We quantified C and N mineralization during the incubation of 663 EOMs from five groups (animal manures, composts, sewage sludges, digestates and others). This represents one of the largest and diversified set of EOM incubations. The C and N mineralization varied widely between and within EOM subgroups. We simulated C and N mineralization with a simple generic decomposition model. Three calibration methods were compared. Individual EOM calibration of the model yielded good model performances, while the use of a unique parameter set per EOM subgroup decreased the model performance, and the use of two EOM characteristics to estimate model parameters gave an intermediate model performance (average RMSE-C values of 32, 99 and 65 mg C g⁻¹ added C and average RMSE-N values of 50, 126 and 110 mg N g⁻¹ added N, respectively). Because of the EOM variability, individual EOM calibration based on incubation remains the recommended method for predicting most accurately the C and N mineralization of EOMs. However, the two alternative calibration methods are sufficient for the simulation of EOMs without incubation data to obtain reasonable model performances.     

An inter-laboratory comparison of multi-enzyme and multiple substrate-induced respiration assays to assess method consistency in soil monitoring

The use of indicators in soil monitoring schemes to detect changes in soil quality is receiving increased attention, particularly the application of soil biological methods. However, to date, the ability to compare information from different laboratories applying soil microbiological techniques in broad-scale monitoring has rarely been taken into account. This study aimed to assess the consistency and repeatability of two techniques that are being evaluated for use as microbiological indicators of soil quality: multi-enzyme activity assay and multiple substrate-induced respiration (MSIR). Data were tested for intrinsic (within-assay plate) variation, inter-laboratory repeatability (geometric mean regression and correlation coefficient) and land-use discrimination (principal components analysis). Intrinsic variation was large for both assays suggesting that high replicate numbers are required. Inter-laboratory repeatability showed diverging patterns for the enzyme assay and MSIR. Discrimination of soils was significant for both techniques with relatively consistent patterns; however, combined laboratory discrimination analyses for each technique showed inconsistent correspondence between the laboratories. These issues could be addressed through the adoption of reliable analytical standards for biological methods along with adequate replication. However, until the former is addressed, dispersed analyses are not currently advisable for monitoring schemes.     

Tomato responses to ammonium and nitrate nutrition under controlled root‐zone pH

Tomato (Lycopersicon esculentum L. Mill. ‘Vendor') plants were grown for 21 days in flowing solution culture with N supplied as either 1.0 mM NO₃ ^‐ or 1.0 mM NH₄ ⁺. Acidity in the solutions was automatically maintained at pH 6.0. Accumulation and distribution of dry matter and total N and net photosynthetic rate were not affected by source of N. Thus, when rhizosphere acidity was controlled at pH 6.0 during uptake, either NO₃ ^‐ or NH₄ ⁺ can be used efficiently by tomato. Uptake of K⁺ and Ca²⁺ were not altered by N source, but uptake of Mg²⁺ was reduced in NH₄ ⁺‐fed plants. This indicates that uptake of Mg²⁺ was regulated at least partially by ionic balance within the plant.     

Vitamin D and sterol composition of 10 types of mushrooms from retail suppliers in the United States

Vitamin D(2) (ergocalciferol) and sterols were analyzed in mushrooms sampled nationwide in the United States to update the USDA Nutrient Database for Standard Reference. Vitamin D(2) was assayed using HPLC with [(3)H]-vitamin D(3) internal standard and sterols by GC-FID mass spectrometric (MS) confirmation. Vitamin D(2) was low (0.1-0.3 μg/100 g) in Agaricus bisporus (white button, crimini, portabella) and enoki, moderate in shiitake and oyster (0.4-0.7 μg/100 g), and high in morel, chanterelle, maitake (5.2-28.1 μg/100 g) and UV-treated portabella (3.4-20.9 μg/100 g), with significant variability among composites for some types. Ergosterol (mg/100 g) was highest in maitake and shiitake (79.2, 84.9) and lowest in morel and enoki (26.3, 35.5); the range was <10 mg/100 g among white button composites but 12-50 mg/100 g among samples of other types. All mushrooms contained ergosta-5,7-dienol (22,23-dihydroergosterol) (3.53-18.0 mg/100 g) and (except morel) ergosta-7-enol. Only morel contained brassicasterol (28.6 mg/100 g) and campesterol (1.23-4.54 mg/100 g) and no ergosta-7,22-dienol. MS was critical in distinguishing campesterol from ergosta-7,22-dienol.     

Coarse bed material patch evolution in low-order,ephemeral channels

In river channel beds composed of a wide range of grain sizes, the bed material is often arranged in discrete patches discernable by relative texture. These bed material patches are the primary source of entrainable coarse sediment within the channel system and their composition and size have been found to influence the composition and rate of sediment transport. Twelve coarse (gravel–cobble) sediment patches distributed throughout the channel network within a 4.53 ha watershed in southeastern Arizona were monitored for 2 years. Changes in patch area and grain size were measured and painted patch grains were monitored to confirm that patch grains were mobilized during flow. Individual coarse bed material patches exhibited variable persistence during flows with return frequencies ranging from approximately 1 year to 4.6 years. While no patch fully dispersed during the study period, two new patches formed. Most coarse patches remained relatively stable in area and grain-size distribution despite the entrainment of patch grains as lost grains were sufficiently replaced with sediment from upstream. Because of the grain replacement process and the effect of other sediment supply dynamics, the changes in patch area and grain-size distribution display a complex relationship with the magnitude of predicted grain mobilization within each patch. Results indicate that relative stability varies from patch to patch, influenced by the balance of patch grains transported out of the patch and the deposition of new grains into the patch. Predictive models of coarse sediment transport and yield that assume the channel bed is a fixed source of sediment supply may not adequately capture the sediment dynamics within patchy channel beds and should be used with caution when applied to these environments due to the possibility of patch instability as documented in this study.     

Farmers' perception on self created water management rules in a pioneer scheme: The mula irrigation scheme, India

During the past two decades with farmer participation in irrigation management moving to center stage, the traditional view of having a centralized control over the water resources for better management has changed. Nevertheless, success of irrigation management transfer depend on a whole set of institutional arrangements or the rules-in-use and the willingness of the users to comply and enforce and/or change the rules in the light of changing circumstances. There are many institutional analyses of water sector, much of them touch on law, policy and administration, and characteristics of the users. The present paper is based on the study carried out to examine the institutional arrangements in one of the water users association that was first in the Maharashtra state. It focuses on the institutional arrangements governing water use and distribution and attempts to elicit the perceptions of the members regarding the rules-in-use. The findings reveal that the WUA has been successful in devising and enforcing the rules for water distribution, fee collection and conflict resolution for over a decade. However, current socio-economic developments such as political heterogeneity have required explicit conflict resolution mechanisms. These issues have now become issues demanding immediate attention and may be use of existing courts or legal institutions to help the WUA sustain in future.