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991.
Evaluation of genetic diversity of bread wheat landraces from Pakistan by AFLP and implications for a future collection strategy 总被引:1,自引:0,他引:1
Ryoko Hirano Akira Kikuchi Makoto Kawase Kazuo N. Watanabe 《Genetic Resources and Crop Evolution》2008,55(7):1007-1015
We used amplified-fragment-length polymorphism (AFLP) markers to evaluate genetic variation in a set of bread wheat (Triticum aestivum L.) landraces and improved materials. Landraces collected from different geographic and agro-ecological zones in Pakistan
in 1987, 1989 and 1991 were separated into two groups based on their geographic origins: northern (Himalaya) and south-western
(Balochistan) Pakistan. Six AFLP primer combinations detected 453 AFLP markers in the 43 landrace accessions and four high-yield
varieties (HYVs). Of these, 225 (49.67%) were rare (shared with < 5% of all accessions). Among these rare alleles, 23 (10.22%)
were common in the Himalaya (shared with > 10% of accessions collected there) but were not found in Balochistan. We conclude
that there is a higher probability of collecting rare alleles at overall, but which are in contrast locally common ones in
the Himalayan region. Gene diversity was 0.17 in the Himalayan group and 0.15 in the Balochistan group. Considerable genetic
variability was found in both groups. Accessions from different agro-ecological zones were indistinguishable by cluster analysis,
indicating intensive seed trading within the country. Cluster analysis indicated that the landraces and the HYVs are genetically
distinct; suggesting that genetic erosion of wheat landraces has been unlikely taken in place. This study provides an example
of how analysis of existing materials and data, can serve as a basis for future collection planning and conservation policies. 相似文献
992.
R. Ortiz José Crossa Jorge Franco Ricardo Sevilla Juan Burgueño 《Genetic Resources and Crop Evolution》2008,55(1):151-162
The maize of Latin America, with its enormous diversity, has played an important role in the development of modern maize cultivars of the American continent. Peruvian highland maize shows a high degree of variation stemming from its history of cultivation by Andean farmers. Multivariate statistical methods for classifying accessions have become powerful tools for classifying genetic resources conservation and the formation of core subsets. This study has two objectives: (1) to use a numerical classification strategy for classifying eight Peruvian highland races of maize based on six vegetative traits evaluated in two years and (2) to compare this classification with the existing racial classification. The numerical classification maintained the main structure of the eight races, but reclassified parts of the races into new groups (Gi). The new groups are more separated and well defined with a decreasing accession within group × environment interaction. Most of the accessions from G1 are from Cusco Gigante, all of the accessions from G3 (except one) are from Confite Morocho, and all of the accessions from G7 are from Chullpi. Group G2 has four accessions from Huayleño and four accessions from Paro, whereas G4 has four accessions from Huayleño and five accessions from San Geronimo. Group G5 has accessions from four races, and G6 and G8 formed small groups with two and one accession each, respectively. These groups can be used for forming core subsets for the purpose of germplasm enhancement and assembling gene pools for further breeding. 相似文献
993.
For the selection of donors with valuable characteristics for breeding, 39 thyme accessions were evaluated in three years
according to a staggered schedule. The criteria investigated were: winter hardiness, beginning of flowering, growth height,
yield of the dry herb, content of essential oil, composition of the essential oil, DNA content of cell nuclei and number of
chromosomes. The most strongly varying traits between the populations were the yield of dry herb, the content of essential
oil and the content of volatile phenols with coefficients of variation (CV) between CV 40% and 50%. The largest variation
within a population was detected for the yield of dry herb (CV 25–46%) and the content of essential oil (CV 17–48%). The homogeneity
of the populations was different. The minimal average coefficient of variation of all traits (CV 19%) was determined in the
population of the cultivar ‘Varico II’ and in a population from Lithuania. The ploidy level of T. vulgaris was diploid (2n = 30). 相似文献
994.
Ashutosh Mukherjee Satyesh Chandra Roy S. De Bera Hong-En Jiang Xiao Li Cheng-Sen Li Subir Bera 《Genetic Resources and Crop Evolution》2008,55(4):481-485
Hemp (Cannabis sativa L.) cultivation and utilization is an ancient practice to human civilization. There are some controversies on the origin
and subsequent spread of this species. Ancient plant DNA has proven to be a powerful tool to solve phylogenetic problems.
In this study, ancient DNA was extracted from an archaeological specimen of Cannabis sativa associated with archaeological human remains from China. Ribosomal and Cannabis specific chloroplast DNA regions were PCR amplified. Sequencing of a species-specific region and subsequent comparison with
published sequences were performed. Successful amplification, sequencing and sequence comparison with published data suggested
the presence of hemp specific DNA in the archeological specimen. The role of Humulus japonicus Sieb. et Zucc. in the evolution of Cannabis is also indicated. The identification of ancient DNA of 2500 years old C. sativa sample showed that C. sativa races might have been introduced into China from the European–Siberian center of diversity. 相似文献
995.
996.
Abderrazek Jilal Stefania Grando Robert J. Henry L. Slade Lee Nicole Rice Helen Hill Michael Baum Salvatore Ceccarelli 《Genetic Resources and Crop Evolution》2008,55(8):1221-1230
Twenty genic- and genomic SSR markers were used to study genetic diversity and geographical differentiation of barley from 29 countries through analysis of a worldwide collection of 304 ICARDA’s barley landraces. Of these, 19 loci were highly polymorphic in the material studied. Based on Nei-distance matrix, Principal Component Analysis (PCoA) and cluster analysis using UPGMA associated with AMOVA the data revealed countries’ grouping within regions. Three distinct germplasm pools were identified in the landraces. The first of these was from Eastern Africa (Eritrea and Ethiopia) and South America (Ecuador, Peru and Chile) suggesting that barley introduced to South America might have originated specifically from East Africa or that they share a common genetic basis for adaptation. The second was the Caucasus (Armenia and Georgia) and the third included the remaining regions of Central Asia, Near East, Northern Africa and Eastern Asia. Genetic diversity of barley subspecies (Six-rowed barley, Two-rowed barley, H. spontaneum C. Koch and H. agriocrithon Åberg) also discriminates them into three groups: cultivated barleys (Six-rowed barley and Two-rowed barley), wild barley H. spontaneum and subspecies H. agriocrithon. These results associated with parsimony analysis demonstrate that H. agriocrithon and H. spontaneum might be distinct and do not support a hybrid origin for H. agriocrithon suggesting further investigation of the basis of more intense sampling of the two subspecies H. spontaneum and H. agriocrithon. 相似文献
997.
998.
A. S. M. G. Masum Akond N. Watanabe Y. Furuta 《Genetic Resources and Crop Evolution》2008,55(1):133-141
Genetic diversity of a set of introgression lines of Triticum aestivum L./T. polonicum L. with long glume and T. petropavlovskyi Udacz. et Migusch. were analyzed by Amplified Fragments Length Polymorphism (AFLP). Small-scale bulk breeding method was
applied throughout until F6 generation to develop the introgression lines. Thirty-eight hexapolid F7 plants with long glume phenotype and their parents were subjected to AFLP analysis by four primer combinations. A total of
47 polymorphic loci were detected between the parents, 15 of them were introgressed across the 38 lines. It was hypothesized
that approximately 50% of A or B genomes associated polymorphic loci were introgressed. The variation of introgression lines
was limited within the diversity between their parents, T. aestivum L. cv. Novosibirskaya 67 (N67) and T. polonicum L. cv. IC12196. N67 was closer to 38 introgression lines than that of IC12196. The UPGMA cluster and principal coordinate
analysis (PCO) grouping showed 0.84 to 0.98 similarity values between N67 and the introgression lines. Eleven T. petropavlovskyi accessions were distinguished from introgression lines with UPGMA clusters and PCO groupings, and T. petropavlovskyi was located between the introgressions lines and IC12196. Several introgression lines resembled with T. petropavlovskyi for awning and glume length. The genetic variation among 38 introgression lines was much wider than that of T. petropavlovskyi. We concluded that T. petropavlovskyi was established by intensive selection of hybrid between T. aestivum/T. polonicum. 相似文献
999.
Gerard Allan Amber Williams Pablo D. Rabinowicz Agnes P. Chan Jacques Ravel Paul Keim 《Genetic Resources and Crop Evolution》2008,55(3):365-378
Worldwide genetic diversity in 200 individuals comprising 41 castor bean accessions was assessed using amplified fragment
polymorphisms (AFLPs) and simple sequence repeats (SSRs). We found that, despite surveying five continents and 35 countries,
genetic diversity in castor bean germplasm is relatively low (overall H
e = 0.126 for AFLPs and 0.188 for SSRs) compared to estimates of genetic diversity in other plant species. Our data also show
no geographic structuring of genotypes across continents or countries within continents. An assessment of the congruence between
AFLP and SSRs indicates a low correlation (R
2 = 0.19) between the two data sets, but each marker class nonetheless shows similar patterns of low-genetic diversity and
a lack of geographic structure. Our data do suggest that SSRs yield a higher percentage of polymorphic loci, higher heterozyosity
and a greater range of genetic distances, and are therefore more informative than are AFLPs on a locus-by-locus basis. Based
on comparisons with numerous other plant species, we suggest that the lower genetic variation in this worldwide collection
may be due to one or more factors including: sampling strategies that have not captured the full extent of genetic variation
in the species; artifactual variation due to long-term germplasm storage and seed regeneration; or intense selection followed
by domestic cultivation of a limited number of castor bean genotypes, which are widely propagated for their horticultural
and agro-economic value. 相似文献
1000.
A wild tetraploid oat Avena maroccana Gdgr. was collected from the 11 populations in the periphery of Rommani and Casablanca geographic groups of Morocco. Genetic
diversity of the species was investigated using six allozyme systems. Allelic frequencies were scored representing eight polymorphic
and five monomorphic loci. Coefficient of gene differentiation (Gst) was 0.3019, which indicated great genetic differentiation. The number of alleles per locus was 2.6154, the percentage of
polymorphic loci was 61.54, and the expected heterozygosity was 0.2462 in all populations. Genetic diversity in A. maroccana was high in comparison to self-pollinated species. In total, nine heterozygotes resulting from outcrossing were found in
the progeny from M1, M3, M4, M22 and M26. The population of M7 had peculiar alleles Pgd–2SS and Pgd-1SS in high frequency. M9 had the lowest level of diversity out of the 11 populations. Geographic and genetic distances between
all the populations were not significantly correlated with each other (r = 0.0996). Cluster analysis showed that two groups, (M1, M22, M2 and M4) and (M3, M23, M8, M5 and M26) were apparently differentiated.
Two populations of the Casablanca group, M7 and M9 were independent from each other, and were separated distinctly from the
other populations. Genetic diversity of the Rommani and Casablanca groups was almost the same in all the parameters. This
was due to the similar man-made habitat such as roadside or rich fertile soil and brown clay soils. The population size of
A. maroccana was small and restricted to the narrow central Morocco with great genetic differentiation so that genetic diversity may be
reflected from the results of genetic drift and outcrossing heterozygote segregation. 相似文献