Structural unit of xylans from sugi (<Emphasis Type="Italic">Cryptomeria japonica</Emphasis>) and hinoki (<Emphasis Type="Italic">Chamaecyparis obtusa</Emphasis>)

Arabinoglucuronoxylans (AGXs) isolated from the holocellulose of sugi (Cryptomeria japonica) and hinoki (Chamaecyparis obtusa) contained one 4-O-methyl-d-glucopyranosyluronic acid (4-O-Me-d-GlcAp) residue per 6.2 d-xylopyranose (d-Xylp) residues and one 4-O-Me-d-GlcAp residue per 3.8 d-Xylp residues. These AGXs were subjected to partial acid hydrolysis. Analyses by size exclusion chromatography and electrospray-ionization mass spectroscopy of the neutral sugar fractions in the hydrolysates showed the presence of xylooligosaccharides having a degree of polymerization of 2-8 in addition to d-Xyl, suggesting that the AGXs from sugi and hinoki contained unsubstituted chains consisting of at least eight d-Xyl residues. The acidic sugars in the hydrolysates were separated into two series of aldouronic acids composed of 4-O-Me-d-GlcAp and d-Xylp by ion-exchange chromatography. The first series included aldouronic acids from aldobiouronic acid (4-O-Me-d-GlcAp-Xyl) to aldopentaouronic acids (4-O-Me-d-GlcAp-Xyl₄). The second series were aldouronic acids composed of two 4-O-Me-d-GlcAp residues and 2-4 d-Xyl residues. In these acidic sugars, the uronic acid side chains were located on two contiguous d-Xyl residues. These facts indicated that AGXs from sugi and hinoki had a structural unit containing two 4-O-Me-d-GlcAp residues on two contiguous d-Xyl residues as well as AGXs from spruce and larch.     

Nondestructive measurement of cross-sectional shape of a tree trunk

To evaluate windthrow resistance with respect to stem breakage, a nondestructive method for determining the shape of trunk cross sections was developed. In this method, the coordinates of multiple gauge points set on the perimeter of a trunk are calculated by measuring the distances between them. The shape between the gauge points is generated with the use of a profile gauge placed between them. Measurement tests were conducted using profile gauges with lengths of 300 and 900 mm on model specimens with four shape patterns and four different diameters. The accuracy of the estimation was verified by comparing the section modulus calculated for the generated image and for the photograph. The average ratio of section modulus (generated/photo) for all specimens was 0.994, which indicates that the proposed method is highly accurate. The section moduli of hollow trunks can be evaluated using the profile method together with the drill resistance technique on the condition that 26% of the trunk diameter could be drilled without skew.     

Small-angle X-ray scattering study on nanostructural changes with water content in red pine,American pine,and white ash

Wood is a highly sophisticated and multihierarchical material. The nanoscale structures in natural cell walls of red pine, American pine, and white ash specimens were investigated using the small-angle X-ray scattering (SAXS) technique. A tangent-by-tangent method was used to analyze the SAXS data. The results demonstrate that the multihierarchical scatterers in the three specimens can be divided into two dominant components, i.e., a sharp component and a wide component. The sharp component mainly corresponds to the contribution of cellulose microfibrils, and its size is almost unaffected by the water content. However, the wide component includes voids or microcracks and cellulose microfibril aggregates; its size changes, reflecting swelling and water accumulation in the voids or microcracks. Because of the different morphological features of the cell walls, softwood (red pine and American pine) displays different tendencies from hardwood (white ash) in terms of changes in the wide component with water content: the average scatterer size of the wide component has an incremental tendency with the water content in softwood, but it has a descending tendency in hardwood. Fractal analysis further revealed that in white ash the surface of scatterers is coarser and the scatterers form more compact nanostructures than in the two pine woods. All this nanostructural information can be used to explain well the difference of swelling behaviors between the two pines and the white ash.     

Revisiting the mechanism of <Emphasis Type="Italic">β-O</Emphasis>-4 bond cleavage during acidolysis of lignin IV: dependence of acidolysis reaction on the type of acid

The dependence of the acidolysis reaction of a C₆-C₃ dimeric nonphenolic β-O-4 type lignin model compound, 2-(2-methoxyphenoxy)-1-(3,4-dimethoxyphenyl) propane-1,3-diol (veratrylglycerol-β-guaiacyl ether, VG), on the type of acid applied was examined using three different acids [0.2 mol/l HCl, 0.2 mol/l HBr, and 0.1 mol/l (0.2 N) H₂SO₄ in 82% aqueous 1,4-dioxane at 85°C]. In the HCl system, the major reaction modes of the corresponding benzyl cation-type intermediate (BC), which is produced by protonation of the α-hydroxyl group of VG and successive release of the water molecule, are the abstraction of the β-proton and hydride transfer from the β-to the α-position. The liberation of formaldehyde from the γ-hydroxymethyl group of BC is the predominant reaction mode in the H₂SO₄ system. Apparently, an unknown reaction mode or modes is operative in the early stage of the HBr system that causes rapid disappearance of VG accompanied by the quantitative formation of 2-methoxyphenol without affording the common counterpart of a Hibbert’s ketone, 1-hydroxy-3-(3,4-dimethoxyphenyl) propan-2-one. The reaction mode in the HBr system changes with the progress of the reaction and is the same as that in the HCl system after the early stage.     

Preparation and characterization of urea-formaldehyde resin-sodium montmorillonite intercalation-modified poplar

To improve its overall performance, fast-growing poplar was modified using the vacuum-pressure-vacuum impregnation method with a urea-formaldehyde resin-sodium montmorillonite intercalation as the modification solution. The results showed that considerable amounts of urea-formaldehyde resin and montmorillonites entered the poplar tracheid, and some entered the microporous wood. These substances formed bonds with the active groups in timber, causing reduced crystallinity in the amorphous region of the poplar, a decreased level of free hydroxyl, and an enhanced association with hydroxyl and ether bonds. The density, dimensional stability, and mechanical properties of poplar were markedly improved. The best results were obtained with 14% sodium montmorillonite and 20% ureaformaldehyde resin: the bending resistance, compressive resistance, and elastic modulus increased by 19.37%, 30.24%, and 50.06%, respectively. With elevated levels of sodium montmorillonite, the impact toughness and wear rate decreased.     

Effects of sealed press on improving the properties of particleboard

To improve the properties of particleboard, boards were produced using a sealed press. With the sealed press, boards were processed under high-temperature and high-pressure steam. This increased the saturation temperature, causing a dramatic rise in temperature inside the board, faster curing of the binder, and a shorter pressing time. The boards were bonded with urea formaldehyde resin, melamine urea formaldehyde resin, or poly(methylene diphenyl diisocyanate) (PMDI). The sealed press improved the internal bond strength and thickness swelling of boards regardless of the binder used during the reduced pressing time. The increased bonding strength improved the board properties, allowing PMDI with a lower resin content to be used for bonding the boards.     

Functional and structural responses of bacterial and fungal communities from paddy fields following long-term rice cultivation

Purpose

Rice paddy soils undergo pedogenesis driven by periodic flooding and drainage cycles that lead to accumulation of organic matter and the stratification of nutrients and oxygen in the soil profile. Here, we examined the effects of continuous rice cultivation on microbial community structures, enzyme activities, and chemical properties for paddy soils along a chronosequence representing 0–700 years of rice cropping in China.

Materials and methods

Changes in the abundance and composition of bacterial and fungal communities were characterized at three depths (0–5, 5–10, and 10–20 cm) in relation to organic carbon, total nitrogen, dissolved organic carbon, microbial biomass carbon/nitrogen, and activities of acid phosphatase, invertase, and urease.

Results and discussion

Both soil organic carbon and total nitrogen increased over time at all three depths, while pH generally decreased. Microbial abundance (bacteria and fungi) and invertase and urease activity significantly increased with the duration of rice cultivation, especially in the surface layer. Fungal abundance and acid phosphatase activity declined with depth, whereas bacterial abundance was highest at the 5–10-cm soil depth. Profiles of the microbial community based on PCR-DGGE of 16S rRNA indicated that the composition of fungal communities was strongly influenced by soil depth, whereas soil bacterial community structures were similar throughout the profile.

Conclusions

Soil bioactivity (microbial abundance and soil enzymes) gradually increased with organic carbon and total nitrogen accumulation under prolonged rice cultivation. Microbial activity decreased with depth, and soil microbial communities were stratified with soil depth. The fungal community was more sensitive than the bacterial community to cultivation age and soil depth. However, the mechanism of fungal community succession with rice cultivation needs further research.

     

Assessment of changes in soil organic matter after invasion by exotic plant species

Invasive exotic plants can modify soil organic matter (SOM) dynamics and other soil properties. We evaluated changes in particulate organic matter (POM) and carbon (C) mineralisation in adjacent plots invaded by Solidago gigantea, Prunus serotina, Heracleum mantegazzianum and Fallopia japonica, and non-invaded control plots on different soils in Belgium. Litter decomposition of S. gigantea and P. serotina was compared to that of the native species Epilobium hirsutum, Betula pendula and Fagus sylvatica. Disregarding the differences in site characteristics (soil texture, parental material and plant species), we argued that the invasion by S. gigantea and P. serotina enhance SOM dynamics by increasing C mineralisation in 2 out of 3 sites invaded by S. gigantea and in 1 out of 3 sites invaded by P. serotina; C in coarse POM (cPOM, 4,000–250 μm) and fine POM (fPOM, 250–50 μm) in 1 site invaded by S. gigantea and C content in total POM (tPOM, 4,000–50 μm) and the organo-mineral fraction (OMF, 0–50 μm) in 1 site invaded by P. serotina. H. mantegazzianum and F. japonica slowed down SOM dynamics by reducing C mineralisation in three out of four sites; C and nitrogen (N) of fPOM in the invaded compared with the non-invaded plots at one site invaded by H. mantegazzianum. However, N content of cPOM (4,000–250 μm) was higher in the invaded sites by F. japonica compared with the non-invaded plots. Our results indicated that the effects of invasion by exotic plant species were not species-specific but site-specific.     

Using perlite as a substrate carrier for measuring microbial available phosphorus by respiration kinetics in soils

The release of CO₂ by soil microorganisms after the addition of nitrogen and glucose in excess and calibration additions of phosphorus has successfully been used to assess microbial available P, assuming the native soil P pool is then limiting respiration. However, in P-fixing soils and soils with high P content, carbon can be exhausted before the available soil P pool. It is not possible to simply increase the amount of glucose as then the glucose concentration would be lethal for microorganisms. A modified method was tested where soil is mixed with perlite. It was hypothesised that perlite, having a high water holding capacity, would dilute the concentration of glucose, while maintaining the bioavailability of added nutrients, thus avoiding carbon limitation. Factorial combinations of amount of soil and perlite (both adjusted to −25 kPa water potential) were tested to examine if perlite as such had any effect on the respiration. Five tropical soil samples with a sharp gradient in P availability and one N-limited compost material were used. The method successfully reduced the risk of carbon limitation. Microbial indices, such as basal respiration, substrate-induced respiration and maximum P-limited respiration, were directly proportional to the amount of soil in the experiments but unrelated to the amount of perlite, showing that perlite did not affect microbial measurements.     

Comparison of genetic variation among accessions of <Emphasis Type="Italic">Aegilops tauschii</Emphasis> using AFLP and SSR markers

Genetic diversity of 54 accessions of Aegilops tauschii from five countries was assessed using sequence-tagged microsatellites (or simple sequence repeats, SSRs) and amplified fragment length polymorphisms (AFLPs). In the case of AFLP analysis, a total of 256 amplification products obtained, 234 of them were polymorphic across all the 54 accessions. A total of 224 fragments were obtained from the 24 SSR primers and 219 of fragments were polymorphic across all the genotypes screened. Based on both AFLP and SSR markers, the highest percentage of polymorphisms were obtained in Iranian and accessions of unknown origin. The highest polymorphic information content (PIC) value was observed for SSRs (0.82) while the highest marker index (MI) value was for AFLPs (8.5) reflecting the hyper-variability of the first and the distinctive nature of the second system. Principal co-ordinate analysis (PCO) revealed congruent patterns of genetic relationships for both data sets, but did not group accessions strictly according to their geographical origins. Poor correlation was found between AFLP and SSR marker loci. This low association may be due to low number of AFLP and SSR markers. These results show that molecular markers can help to organize the genetic variability and expose useful diversity for breeding purposes.