Comparison of individual assignment methods and factors affecting assignment success in cattle breeds using microsatellites

Abstract

Comparisons of seven different individual assignment methods based on likelihood and distances were carried out with four different sets of data, which varied both in number of populations and genetic divergence. Based on 27 microsatellites genotyped in eight cattle breeds (Icelandic and seven Norwegian), 28 hybrid populations were simulated. Factors affecting individual assignment success, such as number and divergence of populations, sample size and number of loci, were assessed from actual and simulated data. The Bayesian, frequency and Nei-minimum methods performed more or less similarly. Individual assignment success depended mainly on population number and divergence (F_ST). Higher success was observed at high level of divergence among populations and at low number of source populations considered. With eight pure breeds and 27 loci considered the assignment success rate ranged from 55 to 70%. Generally, assignment success increased with increasing number of loci and/or sample size.     

BMAA Inhibits Nitrogen Fixation in the Cyanobacterium Nostoc sp. PCC 7120

Cyanobacteria produce a range of secondary metabolites, one being the neurotoxic non-protein amino acid β-N-methylamino-L-alanine (BMAA), proposed to be a causative agent of human neurodegeneration. As for most cyanotoxins, the function of BMAA in cyanobacteria is unknown. Here, we examined the effects of BMAA on the physiology of the filamentous nitrogen-fixing cyanobacterium Nostoc sp. PCC 7120. Our data show that exogenously applied BMAA rapidly inhibits nitrogenase activity (acetylene reduction assay), even at micromolar concentrations, and that the inhibition was considerably more severe than that induced by combined nitrogen sources and most other amino acids. BMAA also caused growth arrest and massive cellular glycogen accumulation, as observed by electron microscopy. With nitrogen fixation being a process highly sensitive to oxygen species we propose that the BMAA effects found here may be related to the production of reactive oxygen species, as reported for other organisms.     

The life-cycle and seasonal abundance of Echinoparyphium montgomeriana n. sp. (Trematoda: Echinostomatidae) in Natal,South Africa

A new species of Echinoparyphium, E. montgomeriana, is described from Durban, South Africa. Certain unusual aspects of its morphology are discussed. The adult fluke is a parasite of the alimentary tract of birds. Its larval stages are common parasites of freshwater snails belonging to the family Planor-bidae including Buiinus africanus,the intermediate host ofSchistosoma haematobium and S. mattheei in the area. These intra-molluscan stages are shown to have a seasonal transmission cycle.     

Using value functions to elicit spatial preference information

Decision making in forest planning often involves situations, where the value of the stand is dependent on its location or the properties of the stands nearby. Often the most intuitive tool to describe spatial objectives and outcomes is a visual map. However, evaluating and comparing different maps may prove a considerable cognitive burden, especially over large areas and in long-term planning. In this study, we investigate the use of value functions for eliciting spatial preference information from maps. Our case study is part of a project investigating the possibilities of increasing broadleaf-tree-dominated habitats in a northern Swedish landscape. The experts involved in the project evaluated maps showing different fragmentation patterns. Different spatial indices were then calculated for the maps, and expert evaluations were used to sketch value functions describing the preferred fragmentation level. The approach was found to be a quick way of translating spatial preferences into numerical values and conceptualizing the relatively abstract concept of fragmentation in the landscape. Furthermore, the results show that the choice of a certain fragmentation index has a crucial effect on the value function.     

Anti-hyperglycemic Effect of the Aqueous Extract of Banana Infructescence Stalks in Streptozotocin-induced Diabetic Rats

Water extract of banana (Musa sapientum) infructescence stalks has been used in folk medicine in the treatment of diabetes mellitus. This work aims at verifying the claimed effect and elucidating its possible mode of action. The extract was given in replacement of drinking water to diabetic rats, and its mechanism of action was studied by investigating its involvement in glucose transport in Caco-2 monolayers, and in rat jejuna using an in situ perfusion technique. Its effect on the Na⁺/K⁺ ATPase was studied by measuring the amount of inorganic phosphate liberated. The extract reduced significantly blood glucose levels in diabetic rats and glucose transport across rat jejuna and Caco-2 monolayers, and induced a 50 % decrease in their Na⁺/K⁺ ATPase activity. The extract did not induce any further decrease in jejunal glucose uptake in the simultaneous presence of phloridzin and phloretin, respective inhibitors of SGLT1 and GLUT2 transporters nor did it induce a change in the protein expression of SGLT1 and GLUT2. It was concluded that the extract acts by reducing the Na⁺/K⁺ ATPase activity of enterocytes and consequently the sodium gradient required for sugar transport by SGLT1, which leads to down-regulation of GLUT2 and contributes to the observed anti-hyperglycemic effect.     

Pulmonary blood volume in mitral regurgitation in Cavalier King Charles spaniels

Background: Pulmonary edema and venous congestion are well‐recognized signs of congestive heart failure (CHF) in advanced canine chronic mitral regurgitation (MR). However, little is known about pulmonary blood volume (PBV), blood pulmonary transit time (PTT), and the regulation of these. Objectives: To measure and evaluate the relationships of PBV, forward stroke volume (FSV), and heart rate normalized blood pulmonary transit time (nPTT) in healthy dogs and dogs with MR. Animals: Thirty‐three Cavalier King Charles Spaniels; 11 healthy, 4 in modified New York Heart Association (NYHA) class I, 11 in class II, and 7 in CHF. Methods: Heart rate normalized PTTs were measured by radionuclide angiocardiography. Left ventricular end diastolic and systolic diameter, left atrial/aortic root ratio, and FSV were measured by echocardiography. PBV and pulmonary blood volume index (PBVI) were calculated by established formulas. Results: PBVI was 308 ± 56 (mean ± SD) mL/m² for healthy dogs, 287 ± 51 mL/m² in NYHA class I, 360 ± 66 mL/m² in Class II, and 623 ± 232 mL/m² in CHF (P= .0008). Heart rate normalized PTT, not FSV, was a predictor of PBV (r= 0.92 and 0.02, respectively). Conclusions and Clinical Importance: Increased PBV, not decreased FSV, is the main cause of increased nPTT in MR. Increased nPTT can be used as an indicator of abnormal cardiopulmonary function in dogs with MR.     

Nitrogen metabolism and milk production in dairy cows fed semi‐restricted amounts of ryegrass–legume silage with birdsfoot trefoil (Lotus corniculatus L.) or white clover (Trifolium repens L.)

In change‐over trials, mid‐lactation dairy cows were fed concentrate‐supplemented, isonitrogenous and isofibrous perennial ryegrass–legume silage diets that satisfied energy requirements but were suboptimal with respect to metabolizable protein supply. Legumes were either birdsfoot trefoil with low levels of condensed tannins (typical for hemiboreal conditions), or white clover. Averaged over two experimental years, birdsfoot trefoil–based silage resulted in lower digestibility (P < 0·001) of dry matter (50 g kg^?1), organic matter (52 g kg^?1), neutral detergent fibre (120 g kg^?1) and nitrogen (24 g kg^?1) and lower rumen total volatile fatty acid concentration (7 mm ; P = 0·009). Milk protein yield was 36 g d^?1 higher with birdsfoot trefoil silage (P = 0·002), while raw milk yield tended to be 0·8 kg d^?1 higher (P = 0·06). Rumen ammonia concentration was similar between diets, but milk urea concentration (P < 0·001), urinary urea excretion (P = 0·002) and faecal‐N proportion (P = 0·001) were higher with birdsfoot trefoil silage. The results suggest that grass–birdsfoot trefoil silage produced in hemiboreal areas exhibits a protein‐sparing effect in dairy rations, despite a low condensed tannin content that is further diluted by companion grasses and ration concentrate proportion.     

Changes in mean scrotal circumference in performance tested Swedish beef bulls over time

Background

There is a growing interest in beef cattle breeding in Sweden. The majority of the females are bred naturally, which is why it is important to choose healthy fertile bulls to obtain good reproduction and profitability. The breeding soundness evaluation includes measurement of scrotal circumference (SC). Our aim was to analyze if the SC of performance tested beef bulls has changed over the years. In total, 1332 bulls (Angus, Charolais, Hereford and Simmental) from 13 batches (1997-2010) were included in the study. Case book entries from final evaluation of the bulls, 11-13 months old, were compiled and analyzed.

Results

An overall mean SC of 34.7 cm independent of breed and age was found which is above the set minimum level. Only eleven bulls did not reach the minimum level. An increase in SC of 0.06-0.07 cm/year was shown for all breeds. In all (1997-2010), the increase of the average SC (independent of breed and age) was approximately 1 cm. The positive trend was apparent for all breeds but only statistically significant for the Charolais breed.

Conclusions

In conclusion, our results indicated an increase in the SC over time, which improves the possibilities to obtain performance tested beef sires in Sweden with the potential for achieving better fertility results.     

Beliefs about urban fringe forests among urban residents in Sweden

The aim of this study was to examine predictors of beliefs about urban fringe forests among urban residents in Sweden (n = 586). Based on a cognitive hierarchical model, the study investigated how socio-demographic variables, as well as different values and beliefs, were related to the more specific beliefs urban residents have about urban fringe forests. Results demonstrated that the urban fringe forest was perceived to be essential for personal wellbeing, but preservation and accessibility to the forest were also important. Certain differences between socio-demographic groups were identified; for example, the importance of urban fringe forests for personal wellbeing was emphasized more by women, older people and those with a university degree. However, the importance of socio-demographic variables was modest compared with the influence of people's values and beliefs. More specifically, results showed that urban residents’ basic values and ecological worldview, as well as forest values and beliefs (i.e., concerning forest qualities and forest requirements), were important in explaining their beliefs about urban fringe forests. Overall, the study revealed that urban residents are characterized by a heterogeneous set of beliefs concerning urban fringe forests. Recognizing these multiple beliefs in urban fringe forest development processes may help mitigate future conflicts between forest visitors, urban planners, forest owners and forest managers, thus enhancing our way toward good urban living environments.