Canopy light transmittance in Douglas-fir--western hemlock stands

We measured vertical and horizontal variation in canopy transmittance of photosynthetically active radiation in five Pseudotsuga menziesii (Mirb.) Franco-Tsuga heterophylla (Raf.) Sarg. (Douglas-fir-western hemlock) stands in the central Cascades of southern Washington to determine how stand structure and age affect the forest light environment. The shape of the mean transmittance profile was related to stand height, but height of mean maximum transmittance was progressively lower than maximum tree height in older stands. The vertical rate of attenuation declined with stand age in both the overstory and understory. A classification of vertical light zones based on the mean and variance of transmittance showed a progressive widening of the bright (low variance and high mean) and transition (high variance and rapid vertical change) zones in older stands, whereas the dim zone (low variance and mean) narrowed. The zone of maximum canopy surface area in height profiles, estimated by inversion of transmittance profiles, changed from relatively high in the canopy in most young stands ("top-heavy") to lower in the canopy in older stands ("bottom-heavy"). In the understory, all stands had similar mean transmittances, but the spatial scale of variation increased with stand age and increasing crown size. The angular distribution of openness was similar in all stands, though the older stands were less open at all angles than the younger stands. Understory openness was generally unrelated to transmittance in the canopy above. Whole-canopy leaf area indices, estimated using three methods of inverting light measurements, showed little correspondence across methods. The observed patterns in light environment are consistent with structural changes occurring during stand development, particularly the diversification of crowns, the creation of openings of various sizes and the elaboration of the outer canopy surface. The ensemble of measurements has potential use in distinguishing forests of differing ages that have similar stature.     

Some investigations with Beech bark disease Nectria in southern England

Nectria ascospores discharged from a Beech bark diseased tree were monitored by a spore trap, and prevailing meteorological conditions were recorded. Forest and glasshouse experiments are described in which necrosis of beech bark followed wound inoculation with Nectria isolates during dormancy. Perithecia were produced in vitro and spore dimensions were measured. Linear growth rate of the fungus in culture was compared over a range of temperatures.     

Observations on the Quality Characteristics of Waxy (Amylose‐Free) Winter Wheats

Previous investigations have suggested waxy (amylose‐free) wheats (Triticum aestivum L.) possess weak gluten properties and may not be suitable for commercial gluten extraction. This limitation could prevent the use of waxy wheat as a source of unique starch, because gluten is a by‐product of the wheat starch purification process. Fifty waxy wheat lines were used to determine the extent to which gluten protein and other grain quality related traits might vary and, consequently, allow the development of waxy wheat with acceptable gluten properties. Among the waxy lines, significant variation was observed for all measured quality traits with the exception of flour protein concentration. No waxy entries statistically equaled the highest ranking nonwaxy entry for grain volume weight, falling number, flour yield, or mixograph mix time. No waxy lines numerically exceeded or equaled the mean of the nonwaxy controls for falling number, flour yield, or mixograph mix time. For grain and flour protein related variables, however, many waxy lines were identified well within the range of acceptability, relative to the nonwaxy controls used in this study. Approximately 50% of the waxy lines did not differ from the highest ranking nonwaxy cultivar for grain and flour protein concentrations. Forty‐three (86%) of the tested waxy lines were not sig‐nificantly different from the nonwaxy line with the highest mixograph mixing tolerance, 22/50 (44%) of the waxy wheat lines did not differ from the highest ranking nonwaxy line in gluten index scores, and 17/50 (34%) did not differ from the highest ranking nonwaxy line in extracted wet gluten. All waxy experimental lines produced gluten via Glutomatic washing. The quality of the gluten, as measured both by mixograph and gluten index, varied widely among the waxy lines tested. These observations suggest that weak gluten is not a natural consequence of the waxy trait, and waxy cultivars with acceptable gluten properties can be developed.     

Attitudes of Rural Communities Toward Dispersing African Wild Dogs in South Africa

Subsistence pastoralists often view large carnivores negatively given that any loss of livestock is likely to represent a significant economic cost. Consequently, large carnivore conservation initiatives in rural landscapes should incorporate appropriate human–carnivore conflict mitigation strategies. In this study, structured interviews with local residents (n = 247) were used for determining attitudes toward African wild dogs (Lycaon pictus) among rural communities neighboring two protected areas in KwaZulu-Natal, South Africa. Contrary to expectations, the majority of respondents (58%) were generally positive toward wild dogs. This was probably due to a lack of livestock depredation by wild dogs and relatively high levels of formal education among respondents. Respondents with greater knowledge of wild dogs and conflict mitigation had more positive attitudes, and most were aware of effective husbandry techniques. The positive attitudes observed in these rural communities may benefit wild dog dispersal from natal home ranges and the future conservation of this endangered carnivore.     

Long-term catch trends and risk assessment of the Critically Endangered white-spotted wedgefish (Rhynchobatus djiddensis) from South Africa

1. The white-spotted wedgefish (Rhynchobatus djiddensis) is a Critically Endangered shark-like ray in the family Rhinidae. Throughout its Western Indian Ocean distribution, it is targeted for its valuable meat and fins and is reported to have undergone major population declines. However, there remains a need for species specific time-series data to accurately assess localized population declines.
2. This study used two independent long-term (37 and 40 years) time-series catch data from competitive shore angling and shark nets to investigate the size composition and catch per unit effort (CPUE) and conduct a risk assessment for the population on the east coast of South Africa.
3. From 1977 to 2017 the competitive shore fishery captured 7,703 individual R. djiddensis, whilst shark nets in the same region captured 2,856 individuals from 1981 to 2017. Individuals captured in the nets had a sex ratio of 1.8:1 females to males, and were larger than those caught by the anglers. Although the mean annual sizes of net-caught individuals were above the size of reported sexual maturity, there was little evidence to suggest that any individuals captured were reproductively active.
4. Both the competitive shore fishery and shark net catches exhibited strong seasonal trends with the majority of R. djiddensis catches occurring from October to May peaking in austral summer. Standardized CPUE from the competitive shore fishery declined substantially between 1977 and 2017 and shark net catches exhibited a significant (p < 0.05) fourfold decline in annual nominal CPUE from 1981 to 2017.
5. Ultimately, a risk assessment showed a 65.1% decline in abundance over a period of three generation lengths, which indicates that the sampled population of R. djiddensis in South Africa should be classified as Endangered according to the IUCN Red List using criterion A2b. The conservation implications of this are discussed.

     

The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette

The bovine and ovine TRG genes have previously been shown to be located in two loci, TRG1 and TRG2, in contrast to human and mouse TRG genes that are located in a single locus. The bovine TRG1 and TRG2 loci are located on chromosome 4 at 4q3.1 and 4q1.5-2.2, respectively. The complete genomic organization of the two bovine loci is described: each locus comprises three cassettes, each one includes one or several variable genes (TRGV) and one or several joining genes (TRGJ) preceding a constant (TRGC) gene. The location of the TRGC5 cassette is conclusively described in 5' of the TRG1 locus. Analysis of 17 TRGV belonging to 10 different subgroups, 8 TRGJ and 6 TRGC genes is conducted which comprises the most comprehensive list to date.     

Discovery and directed evolution of a glyphosate tolerance gene

The herbicide glyphosate is effectively detoxified by N-acetylation. We screened a collection of microbial isolates and discovered enzymes exhibiting glyphosate N-acetyltransferase (GAT) activity. Kinetic properties of the discovered enzymes were insufficient to confer glyphosate tolerance to transgenic organisms. Eleven iterations of DNA shuffling improved enzyme efficiency by nearly four orders of magnitude from 0.87 mM-1 min-1 to 8320 mM-1 min-1. From the fifth iteration and beyond, GAT enzymes conferred increasing glyphosate tolerance to Escherichia coli, Arabidopsis, tobacco, and maize. Glyphosate acetylation provides an alternative strategy for supporting glyphosate use on crops.