Mapping genes for deep-seeding tolerance in barley

Deep-seeding tolerance, the emergence of seedlings from deep seeded conditions, is involved in stand establishment in semi-arid regions, where the soil surface is too dry for seed germination. Genes determining deep-seeding tolerance in barley were mapped using two doubled haploid populations derived from the following crosses: Harrington × TR306 (H/T)and Step toe × Morex (S/M). Significant quantitative trait loci (QTLs) for deep-seeding tolerance were found in each population. Two QTL sex plained 40% of the phenotypic variation in the H/T population and one QTL (S/M) 8% of the total phenotypic variance. Multiple QTLs accounting for coleoptile length and first internode length were detected in both populations. In the H/T population, there were coincident QTLs for deep-seeding tolerance, coleoptile length and first internode length on the long arm of chromosome 5H. These QTLs correspond with previously reported QTLs for abscisic acid and gibberellic acid response. QTL coincidence may be due to the pleiotropic effects of alleles at a single locus. This information may be useful for breeding programs manipulating morphological and physiological traits in order to develop varieties for semi-arid regions. This revised version was published online in August 2006 with corrections to the Cover Date.     

Uniquely stable 40 kDa subfragment-2 in carp myosin

Digestion of carp myofibrils at 30 degrees C in 0.5 M KCl medium with calcium ion generated unique 135 kDa heavy meromyosin (HMM). The HMM was not produced when digested at 10 degrees C. A further digestion of the 135 kD HMM isolated in the absence of calcium ion generated uniquely short subfragment-2 (S-2) with a size of 40 kDa (40 kDa S-2) together with subfragment-1 (S-1). The 40 kDa S-2 was identified by N- and C-end sequencing, and demonstrated to locate the amino end of the rod portion. The unfolding temperature for the 40 kDa S-2 was around 52 degrees C as studied by circular dichroism measurement. The same unfolding peak was also detected with the intact rod together with a large unfolding peak at around 36 degrees C coming from the rest of the rod portion, light meromyosin. The unfolding peak for the 40 kDa S-2 in myosin was a little lower (48 degrees C) than that in free form, suggesting the involvement of the head portion in the stability of the 40 kDa S-2 in the structure.     

Human activities modify soil properties in urban parks: a case study of Tel Aviv-Jaffa

Purpose

The aim of the present study was to investigate the effects of visitors’ activities on soil properties in parks of Tel Aviv-Jaffa city, Israel.

Materials and methods

The city was divided into three geographical regions: south, central, and north. This division reflects the course of development of the city from south to north and encompasses various socioeconomic levels of residents. In each region, 9–15 parks were randomly chosen and classified into three groups according to their size (in m²): 2?×?10³ to 10?×?10³, 11?×?10³ to 20?×?10³, and 21?×?10³ to 50?×?10³. In each park soil, 0–2 cm of depth layer was sampled in areas under various levels of visitor pressure from July to August 2011, and organic matter, electrical conductivity, and sodium and chlorine contents were determined. Lawns and path and picnic areas represented low and high visitor pressure, respectively. Observations were conducted to characterize the various land uses of the parks and to estimate the numbers of visitors. Also, questionnaires were used at selected parks to assess visitors’ motivations or reasons for visiting the parks.

Results and discussion

Socioeconomic indicators, such as the number of residents, the apartment areas, and the percentages of family households, differed among the regions. Soil properties differed between the areas of high and low visitor pressure: they were influenced by type of human activity, size of the park, and number of visitors.

Conclusions

Soil properties are affected by variations in the intensity of park use by visitors and by the type of activities enjoyed by these visitors, both of which depend on the socioeconomic status of the park area.

     

Effects of past and current crop management on soil microbial biomass and activity

Because soil biota is influenced by a number of factors, including land use and management techniques, changing management practices could have significant effects on the soil microbial properties and processes. An experiment was conducted to investigate differences in soil microbiological properties caused by long- and short-term management practices. Intact monolith lysimeters (0.2 m² surface area) were taken from two sites of the same soil type that had been under long-term organic or conventional crop management and were then subjected to the same 2.5-year crop rotation [winter barley (Hordeum vulgare L.), maize (Zea mais L.), lupin (Lupinus angustifolius L.), and rape (Brassica napus L. ssp. oleifera)] and two fertilizer regimes (following common organic and conventional practices). Soil samples were taken after crop harvest and analyzed for microbial biomass C and N, microbial activity (fluorescein diacetate hydrolysis, arginine deaminase activity, and dehydrogenase activity), and total C and N. The incorporation of the green manure stimulated growth and activity of the microbial communities in soils of both management histories. Soil microbial properties did not show any differences between organically and conventionally fertilized soils, indicating that crop rotation and plant type had a larger influence on the microbial biomass and enzyme activities than fertilization. Initial differences in microbial biomass declined, while the effects of farm management history were still evident in enzyme activities and total C and N. Links between enzyme activities and microbial biomass C varied depending on treatment, indicating differences in microbial community composition.     

Conservation in a changing world: <Emphasis Type="Italic">in situ</Emphasis> conservation of the giant maize of Jala

Using survey data from Jala, Mexico, this case-study evaluates in situ maize conservation of the variety ‘Jala’ (Zea mays L.). Though historically ‘Jala’ was the dominant variety grown in the valley of Jala, today less than 20% of farmers grow it on only 5% of the maize area. Younger growers of the ‘Jala’ variety specialize in it, growing relatively large amounts for niche markets. Older, diversified farmers grow small areas for household use and to compete in a local contest. Conservation of the ‘Jala’ variety has been heavily influenced by shifting ideal concepts of maize, as determined by market and consumption demands and by a contest designed to promote in situ conservation. The current move away from nationalized purchasing may favor ‘Jala’s’ continued conservation.     

Large-sample hypothesis tests for stratified group-testing data

Insect-vectored plant diseases impact the agricultural community each year by affecting the economic value, the quantity, and the quality of crops. Controlling the spread of disease is an important area in risk assessment, and understanding the dynamics of vector populations helps researchers to develop effective treatments. In this article, we consider an experimental design commonly used by researchers who study plant disease and examine large-sample, likelihood-based hypothesis tests that can be used to characterize disease-transmission behavior in a stratified population. Small-sample size and power results along with design considerations are provided. We illustrate our testing procedures using two real data examples and provide recommendations for plant-disease researchers in the field.     

Study of the Water Solubility and Sorption on Particulate Matters of Phthalate in the Presence of Humic Acid Using 14C Labelled Di-(2-Ethylhexyl)Phthalate

Phthalate esters have become widespread contaminants in the aquatic environment, because of their extensive use as non-reactive plasticizers. There is, however, little accurate data on their solubility, transportation, and distribution in the aquatic environment. In this work, we have investigated the influence of humic acid on the water solubility of di-(2-ethylhexyl)phthalate (DEHP), one of the most frequently used phthalate esters in the laboratory studies for DEHP. We have also studied the solid–water distribution of DEHP in the presence of humic acid and particulate matter (activated carbon, ferrihydrite, and kaolinite) to simulate their distribution in a natural aquifer (ternary system). The results show that the water solubility of DEHP can be significantly increased by humic acid. The shape K _eq value, the binding constant of DEHP between water and humic acid at equilibrium, was obtained by fitting experimental data for each humic acid. The shape K _eq values in the ternary system apparently decreased in the order of ferrihydrite ≤ kaolinite ≈ octanol/water partition activated carbon systems. This result shows that the increase in the hydrophobicity of HA remaining in the solution will lead to the apparent increase of shape K _eq in the system since more hydrophilic solid sorbs relatively more hydrophilic HA molecule. The solid–water partition coefficient (shape K _W-P ) for DEHP in the environment estimated from this study is consistent with those reported based on the experiments for natural samples. Quantitative values obtained in this study, such as K'_ow, shape K _eq, and shape K _W-P , can be useful for estimating the behavior of DEHP.     

An application of the mixed linear model and the dirichlet process prior in veterinary medicine research

This article applies Bayesian nonparametric techniques of analysis to the mixed linear model. The distribution of the random effects is specific as a nonparametric prior. A Dirichlet process prior is specified on the space of prior distributions. A modified Dirichlet process is described and applied using a Gibbs sampler. The approach is demonstrated in an investigation of the changes over time of packed cell volume in two breeds of cattle.     

Nitrogen and carbon mineralization of semi-arid shrubland soil exposed to long-term atmospheric nitrogen deposition

Anthropogenic N-deposition represents a significant input of N into semi-arid chaparral and coastal sage scrub (CSS) shrublands of southern California. High levels of atmospheric N deposition have the potential to increase soil C and N mineralization, and we hypothesize that semi-arid shrubland soil exposed to long-term (decades) high N deposition will have significantly higher C and N mineralization potentials. This hypothesis was tested in a laboratory incubation where the inorganic N (NH₄+NO₃) and CO₂ production of soils maintained at a constant temperature of 25°C and a soil moisture of 0.25 g H₂O/g (65% water-filled pore space) were sampled sequentially over a 50-week period. The temporal trend in cumulative C and N mineralization was well described by a first- and zero-order model, respectively. Long-term atmospheric N deposition significantly increased potential N mineralization but not C mineralization, and both the rate and total N mineralization were significantly positively correlated with the surface (0–10 cm) soil δ ¹⁵N natural abundance and negatively correlated with the surface soil C:N ratio. While the incubation techniques used here do not provide realistic estimates of in situ C or N mineralization, these assays indicate that atmospheric N deposition has significantly altered ecosystem N storage and cycling.     

Micropropagation of <Emphasis Type="Italic">Salvadora</Emphasis><Emphasis Type="Italic">persica</Emphasis>-a tree of arid horticulture and forestry

A micropropagation method for Jaal (Salvadora persica)—a tree of arid horticulture and forestry has been developed. Nodal segments of fresh shoot sprouts originated from axillary buds obtained from a plant around 35–40 years old lopped plant were used as explants for establishment of in vitro cultures. Surface-sterilized explants produced optimum number of shoots through activation of axillary buds on Murashige and Skoog’s (MS) medium containing 8.88 μM BA (6-benzyladenine) + additives (25 mgl⁻¹ each of adenine sulphate, arginine, citric acid, 50 mgl⁻¹ ascorbic acid). The shoot multiplication was influenced by the successive transfer of the mother explants for 4–5 passages. The maximum number (23.1 ± 0.73 shoots per explant) of shoots were regenerated on MS supplemented with 1.11 μM BA + 1.16 μM Kn (Kinetin) + 0.54 μM NAA (α-naphthalene acetic acid). About 90% shoots pulse-treated with a combination of 2460.27 μM Indole-3-butyric acid (IBA) + 494.56 μM NOA (2-naphthoxy acetic acid) were rooted ex vitro on soilrite within 15–18 days. Over 80% cloned plantlets were hardened successfully in a green house and transferred to polybag/pots.